Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Forward (+)

47384441 .. 47384830

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG367700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTTGGACTTCTGTCAACGATACAAGTCGAGTGACCTATTTAGCTCTAAATGGTGTACCTGAAATGTCTTGGGAGTGTACTATAGTCGAATGCGGAACCGAGTCTTATTTTGTCAATGGTTGGGTTGCTTTTTGTATGGCAATTAATGATGGGAATTTAAGAGTACACTACATTTTCAAATACGAGGGCCCTAACATGCGGTTCACCATTACAAGGTATTCAGAAGAAGGGAATCTCATTAGATCTATTCCTAATTTGTCAGACATGGCTTATCTTATCACTATCCGTGGCCTCGAACTACTAGAGGATGAATTGTTTTACTATGTTGGAAGTGATGCCACTAACTCCGCGGTACGTACGCATTGTCTTGTTGGCAACATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.7

Weight (kDa)

4.77

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	353
AciI	CCGC	4 cut(s)	96, 202, 351, 353
AcsI	RAATTY	1 cut(s)	157
AfaI	GTAC	5 cut(s)	60, 82, 168, 357, 361
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
AoxI	GGCC	2 cut(s)	190, 292
ApaI	GGGCCC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	157
AseI	ATTAAT	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	190, 191
AsuHPI	GGTGA	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	194
BccI	CCATC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	84
BglII	AGATCT	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	190, 191
BmiI	GGNNCC	2 cut(s)	100, 192
BmsI	GCATC	1 cut(s)	328
BoxI	GACNNNNGTC	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	289, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	289, 351
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	2 cut(s)	192, 294
BsiWI	CGTACG	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	192, 294
Bsp120I	GGGCCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	245
BspACI	CCGC	4 cut(s)	96, 202, 351, 353
BspANI	GGCC	2 cut(s)	192, 294
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	2 cut(s)	100, 192
BssECI	CCNNGG	2 cut(s)	289, 351
BssMI	GATC	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	359
BstDSI	CCRYGG	2 cut(s)	289, 351
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	353
BstKTI	GATC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	202
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	194
BstSNI	TACGTA	1 cut(s)	359
BstUI	CGCG	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	192, 294
BtgI	CCRYGG	2 cut(s)	289, 351
BtsCI	GGATG	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	190, 191
Cfr42I	CCGCGG	1 cut(s)	354
Csp6I	GTAC	5 cut(s)	59, 81, 167, 356, 360
CviAII	CATG	2 cut(s)	199, 268
CviJI	RGCY	5 cut(s)	5, 47, 192, 272, 294
CviKI_1	RGCY	5 cut(s)	5, 47, 192, 272, 294
CviQI	GTAC	5 cut(s)	59, 81, 167, 356, 360
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
Eco105I	TACGTA	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	194
EcoO109I	RGGNCCY	2 cut(s)	190, 191
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	2 cut(s)	202, 271
FaiI	YATR	5 cut(s)	86, 140, 200, 269, 327
FatI	CATG	2 cut(s)	198, 267
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	192, 294
Hin1II	CATG	2 cut(s)	202, 271
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	104, 235
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	5 cut(s)	19, 59, 81, 169, 207
Hpy188I	TCNGA	2 cut(s)	226, 265
Hpy8I	GTNNAC	5 cut(s)	19, 59, 81, 169, 207
HpyAV	CCTTC	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	358
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	2 cut(s)	202, 271
KspI	CCGCGG	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	245
LpnPI	CCDG	1 cut(s)	75
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MboII	GAAGA	1 cut(s)	239
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	4 cut(s)	144, 157, 256, 314
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	3 cut(s)	181, 301, 305
MseI	TTAA	2 cut(s)	147, 161
MspA1I	CMGCKG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	98
MvnI	CGCG	1 cut(s)	353
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	2 cut(s)	202, 271
NlaIV	GGNNCC	2 cut(s)	100, 192
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	202
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	235
Pfl23II	CGTACG	1 cut(s)	359
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	359
PshAI	GACNNNNGTC	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	147
PspLI	CGTACG	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	100, 192
PspOMI	GGGCCC	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	190, 191
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	5 cut(s)	60, 82, 168, 357, 361
RsaNI	GTAC	5 cut(s)	59, 81, 167, 356, 360
SacII	CCGCGG	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	147, 161
Sau3AI	GATC	1 cut(s)	245
Sau96I	GGNCC	2 cut(s)	190, 191
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	5 cut(s)	41, 49, 64, 221, 361
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	84
Sfr303I	CCGCGG	1 cut(s)	354
SgrBI	CCGCGG	1 cut(s)	354
SnaBI	TACGTA	1 cut(s)	359
Sse9I	AATT	4 cut(s)	144, 157, 256, 314
SsiI	CCGC	4 cut(s)	96, 202, 351, 353
SspMI	CTAG	1 cut(s)	305
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	4 cut(s)	31, 90, 297, 385
TasI	AATT	4 cut(s)	144, 157, 256, 314
TatI	WGTACW	2 cut(s)	80, 166
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	147, 161
Tru9I	TTAA	2 cut(s)	147, 161
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	147
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	1 cut(s)	202
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.