Rmu_sc0002045.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002045.1
OG0003970
Physical Location & Seq
Forward (+)
145218 .. 147031
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002045.1_g000027.1.cds

Sequence Viewer

Length: 1257 bp
atgcagaccaaccacagcaactccttatttatatttgatgtgcccatgttcttcgcggaggtcaccttggagaagcacaggagctttttaacaattcctccgcctttccgggtgagacatttgtcagcgaagggtacgcagatggaagcatggctgactctatctggcctccctgccaagatatggtcctgtagtcttattccaatgggggacgaatatatgattgtgggtggttggaaacaattcctgaaaaatatttgtgccggcaaatctgaagtccgccttattttccaactccattctagtacaatgacgtttgtcgttactcggtttgatggattcggtcatctaatgcgaaccccacccgatcttgccgatttcaccattccaccttccctagacggcttggcacagctaaaggaagagtatgtgtacgaagttggaaaacacaagtggtaccgtgtcgatgaacagttggtcatctttgacggtccatttctgacccgtctgtggcaatccggaattccttcatcttacaccattcagcttgagacacaccgtgacctgttgtggaaggttcaggtggaagtttatgggctatcgtcattgcagtttaccggtgggtggtcgaggtttgccctggataccgagttgaattcttctcactctctgaagttgcggttgctagatggtggatacatttcggctgtcatattccatcgtaggaagggtcatttggtgtccccgggatttagtaatgcgaaccaggcgaccatcatccctgttccttcctcaattggctctacttctcattctgttctttcccatcccggcacttccaattcaacgggaactccctggcccatagccactaactatccagctgtaggaaccgtcggtgttccggagcatgcggaacctgatgtagttggacgcgtttggcaaatgcaagttaatgaccatatcatgcaggacctgcaatggtttccggcatgcaccattatcgtatacgattcattcgcatccttgcctcagggttttgtgcaggcagaaaacattgcactctgcaaagatgttttccttttccaaagtttgaccggagcggccatgctaatcaagttggttcctcattgcaataccctctttatgaccgaagggtattcagcattcaagcagcattttcagttgccaactgaatctgaactttcagtgcgtatggttgggaagacccattttgttttcaaccgtccagtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

418

Amino Acids

46.94

Weight (kDa)

6.78

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 984
Acc65I GGTACC 1 cut(s) 456
AccB1I GGYRCC 1 cut(s) 456
AccB7I CCANNNNNTGG 1 cut(s) 183
AccBSI CCGCTC 1 cut(s) 1103
AccI GTMKAC 1 cut(s) 1008
AccII CGCG 2 cut(s) 56, 936
AccIII TCCGGA 2 cut(s) 518, 904
AciI CCGC 6 cut(s) 56, 101, 280, 679, 914, 1103
AcoI YGGCCR 1 cut(s) 1104
AcsI RAATTY 2 cut(s) 522, 655
AcuI CTGAAG 2 cut(s) 294, 692
AdeI CACNNNGTG 1 cut(s) 560
AfaI GTAC 4 cut(s) 136, 307, 434, 458
AfiI CCNNNNNNNGG 4 cut(s) 183, 510, 624, 887
AflIII ACRYGT 1 cut(s) 934
AgeI ACCGGT 1 cut(s) 617
AgsI TTSAA 4 cut(s) 655, 846, 1171, 1243
AjnI CCWGG 3 cut(s) 639, 765, 857
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
AluBI AGCT 4 cut(s) 84, 415, 547, 884
AluI AGCT 4 cut(s) 84, 415, 547, 884
Alw26I GTCTC 2 cut(s) 109, 545
AlwNI CAGNNNCTG 1 cut(s) 976
Ama87I CYCGRG 1 cut(s) 745
Aor13HI TCCGGA 2 cut(s) 518, 904
AoxI GGCC 3 cut(s) 166, 860, 1104
ApeKI GCWGC 1 cut(s) 1174
ApoI RAATTY 2 cut(s) 522, 655
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AsiGI ACCGGT 1 cut(s) 617
Asp700I GAANNNNTTC 2 cut(s) 242, 526
Asp718I GGTACC 1 cut(s) 456
AspS9I GGNCC 4 cut(s) 186, 491, 861, 973
AsuC2I CCSGG 4 cut(s) 110, 746, 747, 831
AsuHPI GGTGA 3 cut(s) 55, 124, 373
AvaI CYCGRG 1 cut(s) 745
AvaII GGWCC 3 cut(s) 186, 491, 973
AxyI CCTNAGG 1 cut(s) 1032
BaeGI GKGCMC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 1232
BbvI GCAGC 1 cut(s) 1186
BccI CCATC 6 cut(s) 136, 329, 683, 726, 782, 834
BceAI ACGGC 1 cut(s) 418
BcgI CGANNNNNNTGC 2 cut(s) 985, 1019
BciT130I CCWGG 3 cut(s) 641, 767, 859
BciVI GTATCC 2 cut(s) 637, 689
BcnI CCSGG 4 cut(s) 110, 746, 747, 831
BcoDI GTCTC 2 cut(s) 109, 545
BfaI CTAG 3 cut(s) 303, 398, 686
BfmI CTRYAG 2 cut(s) 190, 885
BfuAI ACCTGC 1 cut(s) 984
BfuI GTATCC 2 cut(s) 637, 689
BisI GCNGC 2 cut(s) 1104, 1175
BlsI GCNGC 2 cut(s) 1105, 1176
Bme1390I CCNGG 7 cut(s) 110, 641, 746, 747, 767, 831, 859
Bme18I GGWCC 3 cut(s) 186, 491, 973
BmeT110I CYCGRG 1 cut(s) 745
BmgT120I GGNCC 4 cut(s) 186, 491, 861, 973
BmiI GGNNCC 4 cut(s) 458, 892, 918, 1125
BmrFI CCNGG 7 cut(s) 110, 641, 746, 747, 767, 831, 859
BmsI GCATC 1 cut(s) 1031
BoxI GACNNNNGTC 2 cut(s) 121, 317
BpiI GAAGAC 1 cut(s) 1232
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 4 cut(s) 110, 746, 747, 831
BsaJI CCNNGG 5 cut(s) 66, 639, 744, 745, 857
BsaWI WCCGGW 4 cut(s) 518, 617, 904, 1097
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 82, 112, 838, 868
Bsc4I CCNNNNNNNGG 4 cut(s) 183, 510, 624, 887
Bse118I RCCGGY 2 cut(s) 263, 617
Bse1I ACTGG 1 cut(s) 1250
Bse21I CCTNAGG 1 cut(s) 1032
Bse3DI GCAATG 4 cut(s) 605, 986, 1056, 1129
BseAI TCCGGA 2 cut(s) 518, 904
BseBI CCWGG 3 cut(s) 641, 767, 859
BseDI CCNNGG 5 cut(s) 66, 639, 744, 745, 857
BseGI GGATG 3 cut(s) 777, 826, 1022
BseLI CCNNNNNNNGG 4 cut(s) 183, 510, 624, 887
BseMI GCAATG 4 cut(s) 605, 986, 1056, 1129
BseMII CTCAG 1 cut(s) 1046
BseNI ACTGG 1 cut(s) 1250
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 1 cut(s) 1186
BsgI GTGCAG 1 cut(s) 1064
Bsh1236I CGCG 2 cut(s) 56, 936
BshFI GGCC 3 cut(s) 168, 862, 1106
BshNI GGYRCC 1 cut(s) 456
BshTI ACCGGT 1 cut(s) 617
BsiHKCI CYCGRG 1 cut(s) 745
BsiSI CCGG 9 cut(s) 109, 264, 519, 618, 746, 831, 905, 989, 1098
BslFI GGGAC 2 cut(s) 224, 727
BslI CCNNNNNNNGG 4 cut(s) 183, 510, 624, 887
BsmAI GTCTC 2 cut(s) 109, 545
BsmFI GGGAC 2 cut(s) 224, 727
BsmI GAATGC 1 cut(s) 1166
BsnI GGCC 3 cut(s) 168, 862, 1106
BsoBI CYCGRG 1 cut(s) 745
Bsp1286I GDGCHC 1 cut(s) 45
Bsp13I TCCGGA 2 cut(s) 518, 904
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 6 cut(s) 56, 101, 280, 679, 914, 1103
BspANI GGCC 3 cut(s) 168, 862, 1106
BspCNI CTCAG 1 cut(s) 1045
BspEI TCCGGA 2 cut(s) 518, 904
BspFNI CGCG 2 cut(s) 56, 936
BspLI GGNNCC 4 cut(s) 458, 892, 918, 1125
BspMI ACCTGC 1 cut(s) 984
BspT107I GGYRCC 1 cut(s) 456
BsrBI CCGCTC 1 cut(s) 1103
BsrDI GCAATG 4 cut(s) 605, 986, 1056, 1129
BsrFI RCCGGY 2 cut(s) 263, 617
BsrI ACTGG 1 cut(s) 1250
BssAI RCCGGY 2 cut(s) 263, 617
BssECI CCNNGG 5 cut(s) 66, 639, 744, 745, 857
BssMI GATC 1 cut(s) 367
BssNAI GTATAC 1 cut(s) 1009
BssT1I CCWWGG 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 1009
Bst2UI CCWGG 3 cut(s) 641, 767, 859
Bst4CI ACNGT 6 cut(s) 461, 474, 491, 560, 895, 1247
Bst6I CTCTTC 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 976
BstC8I GCNNGC 4 cut(s) 265, 912, 994, 1047
BstDEI CTNAG 1 cut(s) 1032
BstEII GGTNACC 1 cut(s) 61
BstF5I GGATG 3 cut(s) 777, 826, 1022
BstFNI CGCG 2 cut(s) 56, 936
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 2 cut(s) 109, 545
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 2 cut(s) 767, 976
BstNI CCWGG 3 cut(s) 641, 767, 859
BstNSI RCATGY 2 cut(s) 914, 996
BstPAI GACNNNNGTC 2 cut(s) 121, 317
BstPI GGTNACC 1 cut(s) 61
BstSCI CCNGG 7 cut(s) 108, 639, 744, 745, 765, 829, 857
BstSFI CTRYAG 2 cut(s) 190, 885
BstSLI GKGCMC 1 cut(s) 45
BstUI CGCG 2 cut(s) 56, 936
BstV1I GCAGC 1 cut(s) 1186
BstV2I GAAGAC 1 cut(s) 1232
BstZ17I GTATAC 1 cut(s) 1009
Bsu36I CCTNAGG 1 cut(s) 1032
BsuI GTATCC 2 cut(s) 637, 689
BsuRI GGCC 3 cut(s) 168, 862, 1106
BtsCI GGATG 3 cut(s) 777, 826, 1022
BtsIMutI CAGTG 1 cut(s) 1215
BveI ACCTGC 1 cut(s) 984
Cac8I GCNNGC 4 cut(s) 265, 912, 994, 1047
CaiI CAGNNNCTG 1 cut(s) 976
Cfr10I RCCGGY 2 cut(s) 263, 617
Cfr13I GGNCC 4 cut(s) 186, 491, 861, 973
Cfr9I CCCGGG 1 cut(s) 745
CseI GACGC 1 cut(s) 942
Csp6I GTAC 4 cut(s) 135, 306, 433, 457
CspAI ACCGGT 1 cut(s) 617
CviAII CATG 6 cut(s) 46, 150, 911, 967, 993, 1108
CviQI GTAC 4 cut(s) 135, 306, 433, 457
DdeI CTNAG 1 cut(s) 1032
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DraIII CACNNNGTG 1 cut(s) 560
EaeI YGGCCR 1 cut(s) 1104
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
EciI GGCGGA 2 cut(s) 90, 269
Eco130I CCWWGG 1 cut(s) 66
Eco47I GGWCC 3 cut(s) 186, 491, 973
Eco57I CTGAAG 2 cut(s) 294, 692
Eco81I CCTNAGG 1 cut(s) 1032
Eco88I CYCGRG 1 cut(s) 745
Eco91I GGTNACC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 973
EcoO65I GGTNACC 1 cut(s) 61
EcoRI GAATTC 2 cut(s) 522, 655
EcoRII CCWGG 3 cut(s) 639, 765, 857
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 6 cut(s) 49, 153, 914, 970, 996, 1111
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 2 cut(s) 224, 727
FatI CATG 6 cut(s) 45, 149, 910, 966, 992, 1107
FblI GTMKAC 1 cut(s) 1008
Fnu4HI GCNGC 2 cut(s) 1104, 1175
FokI GGATG 3 cut(s) 764, 813, 1009
Fsp4HI GCNGC 2 cut(s) 1104, 1175
FspBI CTAG 3 cut(s) 303, 398, 686
GluI GCNGC 2 cut(s) 1104, 1175
HaeIII GGCC 3 cut(s) 168, 862, 1106
HapII CCGG 9 cut(s) 109, 264, 519, 618, 746, 831, 905, 989, 1098
HgaI GACGC 1 cut(s) 942
Hin1II CATG 6 cut(s) 49, 153, 914, 970, 996, 1111
HinfI GANTC 4 cut(s) 157, 339, 1013, 1196
HpaII CCGG 9 cut(s) 109, 264, 519, 618, 746, 831, 905, 989, 1098
HphI GGTGA 3 cut(s) 55, 124, 373
Hpy166II GTNNAC 3 cut(s) 433, 615, 1009
Hpy188I TCNGA 5 cut(s) 274, 501, 672, 1201, 1256
Hpy188III TCNNGA 3 cut(s) 247, 519, 905
Hpy8I GTNNAC 3 cut(s) 433, 615, 1009
Hpy99I CGWCG 1 cut(s) 899
HpyAV CCTTC 7 cut(s) 124, 402, 537, 568, 721, 798, 1148
HpyCH4III ACNGT 6 cut(s) 461, 474, 491, 560, 895, 1247
HpyCH4IV ACGT 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 767, 976
HpyF3I CTNAG 1 cut(s) 1032
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 6 cut(s) 49, 153, 914, 970, 996, 1111
Kpn2I TCCGGA 2 cut(s) 518, 904
KpnI GGTACC 1 cut(s) 460
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 3 cut(s) 81, 907, 1100
Lsp1109I GCAGC 1 cut(s) 1186
LweI GCATC 1 cut(s) 1031
MaeI CTAG 3 cut(s) 303, 398, 686
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 3 cut(s) 61, 322, 560
MalI GATC 1 cut(s) 369
MbiI CCGCTC 1 cut(s) 1103
MboI GATC 1 cut(s) 367
MboII GAAGA 4 cut(s) 43, 434, 651, 1237
MfeI CAATTG 1 cut(s) 795
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 6 cut(s) 93, 242, 522, 655, 795, 841
MluI ACGCGT 1 cut(s) 934
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 4 cut(s) 215, 316, 421, 910
MnlI CCTC 8 cut(s) 52, 108, 179, 624, 802, 1041, 1137, 1151
MroI TCCGGA 2 cut(s) 518, 904
MroNI GCCGGC 1 cut(s) 263
MroXI GAANNNNTTC 2 cut(s) 242, 526
MseI TTAA 2 cut(s) 89, 954
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 9 cut(s) 109, 264, 519, 618, 746, 831, 905, 989, 1098
MspR9I CCNGG 7 cut(s) 110, 641, 746, 747, 767, 831, 859
MunI CAATTG 1 cut(s) 795
Mva1269I GAATGC 1 cut(s) 1166
MvaI CCWGG 3 cut(s) 641, 767, 859
MvnI CGCG 2 cut(s) 56, 936
MwoI GCNNNNNNNGC 2 cut(s) 767, 976
NaeI GCCGGC 1 cut(s) 265
NciI CCSGG 4 cut(s) 110, 746, 747, 831
NdeII GATC 1 cut(s) 367
NgoMIV GCCGGC 1 cut(s) 263
NlaIII CATG 6 cut(s) 49, 153, 914, 970, 996, 1111
NlaIV GGNNCC 4 cut(s) 458, 892, 918, 1125
NmuCI GTSAC 2 cut(s) 61, 560
NspI RCATGY 2 cut(s) 914, 996
PaeI GCATGC 2 cut(s) 914, 996
PctI GAATGC 1 cut(s) 1166
PdiI GCCGGC 1 cut(s) 265
PdmI GAANNNNTTC 2 cut(s) 242, 526
PfeI GAWTC 3 cut(s) 339, 1013, 1196
PflMI CCANNNNNTGG 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 617
PkrI GCNGC 2 cut(s) 1105, 1176
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 973
PshAI GACNNNNGTC 2 cut(s) 121, 317
Psp5II RGGWCCY 1 cut(s) 973
Psp6I CCWGG 3 cut(s) 639, 765, 857
PspEI GGTNACC 1 cut(s) 61
PspGI CCWGG 3 cut(s) 639, 765, 857
PspN4I GGNNCC 4 cut(s) 458, 892, 918, 1125
PspPI GGNCC 4 cut(s) 186, 491, 861, 973
PspPPI RGGWCCY 1 cut(s) 973
PstNI CAGNNNCTG 1 cut(s) 976
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 4 cut(s) 136, 307, 434, 458
RsaNI GTAC 4 cut(s) 135, 306, 433, 457
SaqAI TTAA 2 cut(s) 89, 954
SatI GCNGC 2 cut(s) 1104, 1175
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 4 cut(s) 186, 491, 861, 973
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 7 cut(s) 110, 641, 746, 747, 767, 831, 859
SduI GDGCHC 1 cut(s) 45
SfaNI GCATC 1 cut(s) 1031
SfcI CTRYAG 2 cut(s) 190, 885
SinI GGWCC 3 cut(s) 186, 491, 973
SmaI CCCGGG 1 cut(s) 747
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SphI GCATGC 2 cut(s) 914, 996
Sse9I AATT 6 cut(s) 93, 242, 522, 655, 795, 841
SsiI CCGC 6 cut(s) 56, 101, 280, 679, 914, 1103
SspI AATATT 1 cut(s) 256
SspMI CTAG 3 cut(s) 303, 398, 686
StyD4I CCNGG 7 cut(s) 108, 639, 744, 745, 765, 829, 857
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 6 cut(s) 461, 474, 491, 560, 895, 1247
TaiI ACGT 1 cut(s) 317
TaqI TCGA 2 cut(s) 465, 629
TaqII GACCGA 2 cut(s) 332, 1166
TasI AATT 6 cut(s) 93, 242, 522, 655, 795, 841
TatI WGTACW 1 cut(s) 305
TauI GCSGC 1 cut(s) 1106
TfiI GAWTC 3 cut(s) 339, 1013, 1196
Tru1I TTAA 2 cut(s) 89, 954
Tru9I TTAA 2 cut(s) 89, 954
TscAI CASTG 1 cut(s) 1215
TseFI GTSAC 2 cut(s) 61, 560
TseI GCWGC 1 cut(s) 1174
Tsp45I GTSAC 2 cut(s) 61, 560
TspDTI ATGAA 3 cut(s) 483, 519, 1005
TspMI CCCGGG 1 cut(s) 745
TspRI CASTG 1 cut(s) 1215
Van91I CCANNNNNTGG 1 cut(s) 183
VpaK11BI GGWCC 3 cut(s) 186, 491, 973
XapI RAATTY 2 cut(s) 522, 655
XceI RCATGY 2 cut(s) 914, 996
XmaI CCCGGG 1 cut(s) 745
XmiI GTMKAC 1 cut(s) 1008
XmnI GAANNNNTTC 2 cut(s) 242, 526
XspI CTAG 3 cut(s) 303, 398, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.