Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000317.1

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Reverse (-)

27343 .. 28703

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000317.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atggcattgaacaacaacaaccgtgtgaggagttacgagttgcctatattctatgccagcatcgacaacaatgatcccactgcacacccaagaattccaagagagttcaggaaggcaaacttgttttatgacaagtcgaagttagctttgctgagtctaaatgggttccctcagtgggcttgggagtgtcaggttgtttattttgagaaggacatatacttcggtacacacttttataagttctgtgctgctgttagtgaagggaacagaaacatctatctagttttcaactacgaaggtattcccatgcgcttcacggtgacaagatttgattgtaatggacatatgctgcgatccccgccaaacctatattcatatcagggacctccgctcagtttcgacggtttggaacatctaaaggaggagttcttatgcgttaacacacttgcaatagaggaccacatggacttgcccatgggtagatttgtggaaaaattggttgcgaatggcctaccggccacatatactatgttgcttgaaacccacccatcaatgagttggaacgttacagtgggttataatatggacaataccgttgggcttcagcacgggtggctaccatttgcatacgcaaccggaatgaatagctctcaatgtattcgcttaaagttacatcaagatgggttaaccatttctgtattgattttcaatgtgatcactggtgcagtgacgttaccagattttgacaatcagggacttactgacgcgattcctccgcaaacctcggccactgttcatcatgcaatagacatgcccggcagtagtaatcagtctgcaattgatgaggacgtaaacgacgacgaagtttggcaagggcttggagaacttccttccagcataaacctagaaggtttacccaattgcacatgcgtgatgtaccctaccttcggggttagtaatcgtgttgttatgtgcaccaatatcatgaaacatgctcaaacagcagtatattgtcatatgaatattcttcaatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

38.98

Weight (kDa)

5.29

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	237, 579
AccBSI	CCGCTC	1 cut(s)	391
AccII	CGCG	1 cut(s)	767
AciI	CCGC	3 cut(s)	359, 389, 776
AclI	AACGTT	1 cut(s)	564
AclWI	GGATC	2 cut(s)	68, 348
AcoI	YGGCCR	2 cut(s)	516, 786
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	2 cut(s)	226, 938
AfiI	CCNNNNNNNGG	2 cut(s)	175, 947
AgsI	TTSAA	5 cut(s)	10, 289, 539, 709, 1031
AjuI	GAANNNNNNNTTGG	2 cut(s)	355, 387
AleI	CACNNNNGTG	1 cut(s)	929
AluBI	AGCT	2 cut(s)	146, 648
AluI	AGCT	2 cut(s)	146, 648
Alw21I	GWGCWC	1 cut(s)	977
Alw44I	GTGCAC	1 cut(s)	973
AlwI	GGATC	2 cut(s)	68, 348
AoxI	GGCC	3 cut(s)	508, 516, 786
ApaLI	GTGCAC	1 cut(s)	973
ApeKI	GCWGC	2 cut(s)	248, 349
ApoI	RAATTY	1 cut(s)	93
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	383, 457
AsuC2I	CCSGG	1 cut(s)	816
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	2 cut(s)	383, 457
BaeGI	GKGCMC	1 cut(s)	977
BarI	GAAGNNNNNNTAC	4 cut(s)	200, 232, 929, 961
Bbv12I	GWGCWC	1 cut(s)	977
BbvI	GCAGC	2 cut(s)	235, 336
BccI	CCATC	2 cut(s)	556, 674
BclI	TGATCA	1 cut(s)	714
BcnI	CCSGG	1 cut(s)	816
BfaI	CTAG	2 cut(s)	281, 905
BisI	GCNGC	2 cut(s)	249, 350
BlsI	GCNGC	2 cut(s)	250, 351
Bme1390I	CCNGG	1 cut(s)	816
Bme18I	GGWCC	2 cut(s)	383, 457
BmgT120I	GGNCC	2 cut(s)	383, 457
BmiI	GGNNCC	2 cut(s)	167, 384
BmrFI	CCNGG	1 cut(s)	816
BmsI	GCATC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	816
BsaJI	CCNNGG	2 cut(s)	474, 783
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 947
Bse118I	RCCGGY	1 cut(s)	514
Bse1I	ACTGG	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	474, 783
BseLI	CCNNNNNNNGG	2 cut(s)	175, 947
BseMII	CTCAG	3 cut(s)	143, 185, 406
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	2 cut(s)	43, 437
BseSI	GKGCMC	1 cut(s)	977
BseXI	GCAGC	2 cut(s)	235, 336
BsgI	GTGCAG	2 cut(s)	66, 744
Bsh1236I	CGCG	1 cut(s)	767
BshFI	GGCC	3 cut(s)	510, 518, 788
BsiHKAI	GWGCWC	1 cut(s)	977
BsiSI	CCGG	3 cut(s)	515, 636, 816
BslFI	GGGAC	2 cut(s)	396, 768
BslI	CCNNNNNNNGG	2 cut(s)	175, 947
BsmFI	GGGAC	2 cut(s)	396, 768
BsnI	GGCC	3 cut(s)	510, 518, 788
Bsp1286I	GDGCHC	1 cut(s)	977
Bsp143I	GATC	3 cut(s)	73, 353, 714
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	3 cut(s)	359, 389, 776
BspANI	GGCC	3 cut(s)	510, 518, 788
BspCNI	CTCAG	3 cut(s)	144, 184, 405
BspFNI	CGCG	1 cut(s)	767
BspHI	TCATGA	1 cut(s)	984
BspLI	GGNNCC	2 cut(s)	167, 384
BspPI	GGATC	2 cut(s)	68, 348
BsrBI	CCGCTC	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	724
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	2 cut(s)	474, 783
BssMI	GATC	3 cut(s)	73, 353, 714
BssT1I	CCWWGG	1 cut(s)	474
Bst4CI	ACNGT	6 cut(s)	23, 319, 404, 571, 595, 793
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	3 cut(s)	152, 171, 392
BstDSI	CCRYGG	1 cut(s)	474
BstFNI	CGCG	1 cut(s)	767
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	3 cut(s)	76, 356, 717
BstMBI	GATC	3 cut(s)	73, 353, 714
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 613, 1001
BstNSI	RCATGY	3 cut(s)	814, 930, 995
BstSCI	CCNGG	1 cut(s)	814
BstSLI	GKGCMC	1 cut(s)	977
BstUI	CGCG	1 cut(s)	767
BstV1I	GCAGC	2 cut(s)	235, 336
BsuRI	GGCC	3 cut(s)	510, 518, 788
BtgI	CCRYGG	1 cut(s)	474
BtsI	GCAGTG	2 cut(s)	78, 732
BtsIMutI	CAGTG	6 cut(s)	78, 179, 576, 717, 732, 789
Cac8I	GCNNGC	1 cut(s)	58
CciI	TCATGA	1 cut(s)	984
CfoI	GCGC	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	383, 457
CseI	GACGC	1 cut(s)	773
Csp6I	GTAC	2 cut(s)	225, 937
CviAII	CATG	8 cut(s)	307, 463, 475, 800, 811, 927, 985, 992
CviJI	RGCY	9 cut(s)	146, 179, 510, 518, 601, 616, 648, 788, 877
CviKI_1	RGCY	9 cut(s)	146, 179, 510, 518, 601, 616, 648, 788, 877
CviQI	GTAC	2 cut(s)	225, 937
DdeI	CTNAG	3 cut(s)	152, 171, 392
DpnI	GATC	3 cut(s)	75, 355, 716
DpnII	GATC	3 cut(s)	73, 353, 714
EaeI	YGGCCR	2 cut(s)	516, 786
Eco130I	CCWWGG	1 cut(s)	474
Eco47I	GGWCC	2 cut(s)	383, 457
Eco57I	CTGAAG	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	8 cut(s)	310, 466, 478, 803, 814, 930, 988, 995
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	2 cut(s)	396, 768
FatI	CATG	8 cut(s)	306, 462, 474, 799, 810, 926, 984, 991
FauI	CCCGC	1 cut(s)	366
FauNDI	CATATG	2 cut(s)	345, 1017
FbaI	TGATCA	1 cut(s)	714
Fnu4HI	GCNGC	2 cut(s)	249, 350
Fsp4HI	GCNGC	2 cut(s)	249, 350
FspBI	CTAG	2 cut(s)	281, 905
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	2 cut(s)	249, 350
HaeIII	GGCC	3 cut(s)	510, 518, 788
HapII	CCGG	3 cut(s)	515, 636, 816
HgaI	GACGC	1 cut(s)	773
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	8 cut(s)	310, 466, 478, 803, 814, 930, 988, 995
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HincII	GTYRAC	2 cut(s)	439, 687
HindII	GTYRAC	2 cut(s)	439, 687
HinfI	GANTC	2 cut(s)	154, 769
HpaI	GTTAAC	2 cut(s)	439, 687
HpaII	CCGG	3 cut(s)	515, 636, 816
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	6 cut(s)	227, 439, 687, 853, 914, 975
Hpy188III	TCNNGA	3 cut(s)	109, 677, 985
Hpy8I	GTNNAC	6 cut(s)	227, 439, 687, 853, 914, 975
Hpy99I	CGWCG	3 cut(s)	404, 860, 863
HpyAV	CCTTC	7 cut(s)	106, 202, 254, 290, 900, 902, 955
HpyCH4III	ACNGT	6 cut(s)	23, 319, 404, 571, 595, 793
HpyCH4IV	ACGT	3 cut(s)	564, 731, 849
HpyCH4V	TGCA	8 cut(s)	83, 449, 626, 725, 803, 836, 924, 975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 613, 1001
HpyF3I	CTNAG	3 cut(s)	152, 171, 392
HpySE526I	ACGT	3 cut(s)	564, 731, 849
Hsp92II	CATG	8 cut(s)	310, 466, 478, 803, 814, 930, 988, 995
HspAI	GCGC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	714
KspAI	GTTAAC	2 cut(s)	439, 687
Kzo9I	GATC	3 cut(s)	73, 353, 714
Lsp1109I	GCAGC	2 cut(s)	235, 336
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	281, 905
MaeII	ACGT	3 cut(s)	564, 731, 849
MaeIII	GTNAC	6 cut(s)	32, 319, 565, 669, 727, 732
MalI	GATC	3 cut(s)	75, 355, 716
MbiI	CCGCTC	1 cut(s)	391
MboI	GATC	3 cut(s)	73, 353, 714
MboII	GAAGA	1 cut(s)	1019
MfeI	CAATTG	2 cut(s)	837, 919
MhlI	GDGCHC	1 cut(s)	977
MluCI	AATT	4 cut(s)	93, 494, 837, 919
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	539
MnlI	CCTC	8 cut(s)	21, 180, 396, 415, 448, 783, 793, 838
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	3 cut(s)	438, 665, 686
MslI	CAYNNNNRTG	2 cut(s)	678, 929
MspI	CCGG	3 cut(s)	515, 636, 816
MspR9I	CCNGG	1 cut(s)	816
MunI	CAATTG	2 cut(s)	837, 919
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	3 cut(s)	358, 613, 1001
NciI	CCSGG	1 cut(s)	816
NcoI	CCATGG	1 cut(s)	474
NdeI	CATATG	2 cut(s)	345, 1017
NdeII	GATC	3 cut(s)	73, 353, 714
NlaIII	CATG	8 cut(s)	310, 466, 478, 803, 814, 930, 988, 995
NlaIV	GGNNCC	2 cut(s)	167, 384
NmeAIII	GCCGAG	1 cut(s)	764
NmuCI	GTSAC	2 cut(s)	319, 727
NspI	RCATGY	3 cut(s)	814, 930, 995
OliI	CACNNNNGTG	1 cut(s)	929
PagI	TCATGA	1 cut(s)	984
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	769
PkrI	GCNGC	2 cut(s)	250, 351
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PpuMI	RGGWCCY	1 cut(s)	383
PsiI	TTATAA	2 cut(s)	237, 579
Psp1406I	AACGTT	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	167, 384
PspPI	GGNCC	2 cut(s)	383, 457
PspPPI	RGGWCCY	1 cut(s)	383
RsaI	GTAC	2 cut(s)	226, 938
RsaNI	GTAC	2 cut(s)	225, 937
RseI	CAYNNNNRTG	2 cut(s)	678, 929
SaqAI	TTAA	3 cut(s)	438, 665, 686
SatI	GCNGC	2 cut(s)	249, 350
Sau3AI	GATC	3 cut(s)	73, 353, 714
Sau96I	GGNCC	2 cut(s)	383, 457
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	816
SduI	GDGCHC	1 cut(s)	977
SfaNI	GCATC	1 cut(s)	69
SinI	GGWCC	2 cut(s)	383, 457
SmiMI	CAYNNNNRTG	2 cut(s)	678, 929
Sse9I	AATT	4 cut(s)	93, 494, 837, 919
SsiI	CCGC	3 cut(s)	359, 389, 776
SspI	AATATT	2 cut(s)	1024, 1034
SspMI	CTAG	2 cut(s)	281, 905
StyD4I	CCNGG	1 cut(s)	814
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	6 cut(s)	23, 319, 404, 571, 595, 793
TaiI	ACGT	3 cut(s)	567, 734, 852
TaqI	TCGA	3 cut(s)	63, 137, 399
TasI	AATT	4 cut(s)	93, 494, 837, 919
TfiI	GAWTC	1 cut(s)	769
Tru1I	TTAA	3 cut(s)	438, 665, 686
Tru9I	TTAA	3 cut(s)	438, 665, 686
TscAI	CASTG	6 cut(s)	85, 179, 576, 724, 732, 796
TseFI	GTSAC	2 cut(s)	319, 727
TseI	GCWGC	2 cut(s)	248, 349
Tsp45I	GTSAC	2 cut(s)	319, 727
TspDTI	ATGAA	5 cut(s)	363, 656, 785, 1001, 1034
TspRI	CASTG	6 cut(s)	85, 179, 576, 724, 732, 796
VneI	GTGCAC	1 cut(s)	973
VpaK11BI	GGWCC	2 cut(s)	383, 457
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	3 cut(s)	814, 930, 995
XcmI	CCANNNNNNNNNTGG	1 cut(s)	555
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	2 cut(s)	281, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.