Rmu_sc0000894.1_g000064

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000894.1
OG0003970
Physical Location & Seq
Forward (+)
338265 .. 339473
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000894.1_g000064.1.cds

Sequence Viewer

Length: 642 bp
atggcattgaacaacaacaaccctgcaaggagttacgagttgcctatgttctatgccagcatcgacaacagtaatgacactgcacacccaataattccaagagagttcaggaaggcaaacttgttttatgacaagtcaaagatagctttgctgagtctaaatgggttgcctcagtgggcttgggagtgtgaggttgttcattttgagaacagcatccatatagttttcaactacgaagtgggttacaatatggacaataccgtcggtctccagcaagggtggctaccatttgcatatgcaatcggactggatggctctcaatgtattcccttcaagttacatcaagatggggaaaccatgtctgtattgattttcaatgcatacaccggtgcagtgacattgccctattttgaaggggcgggacctcctaacgcgattccgttgcttaccccagccaggattcacacgtcaattgagatgcttgacactagtaatgaggctgcaattgatgatgacgtcaacgccaacgaagtttggcaaggacttggagaacttagttcgaccgaaagcctacaagtatttcccaaatgcacatgcctgatgtcctctagcttcggggttagtcatcctgttgttatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.6

Weight (kDa)

4.55

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AatII GACGTC 1 cut(s) 519
AccII CGCG 1 cut(s) 434
AciI CCGC 1 cut(s) 419
AcyI GRCGYC 1 cut(s) 516
AfiI CCNNNNNNNGG 1 cut(s) 456
AflIII ACRYGT 1 cut(s) 465
AgeI ACCGGT 1 cut(s) 386
AgsI TTSAA 5 cut(s) 10, 229, 334, 376, 413
AhlI ACTAGT 1 cut(s) 488
AjiI CACGTC 1 cut(s) 468
AjnI CCWGG 1 cut(s) 455
AluBI AGCT 2 cut(s) 146, 612
AluI AGCT 2 cut(s) 146, 612
Alw26I GTCTC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 500
AsiGI ACCGGT 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 422
AvaII GGWCC 1 cut(s) 422
BbvI GCAGC 1 cut(s) 487
BccI CCATC 2 cut(s) 305, 341
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciT130I CCWGG 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 272
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 2 cut(s) 489, 609
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
Bme1390I CCNGG 1 cut(s) 457
Bme18I GGWCC 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 1 cut(s) 457
BmsI GCATC 3 cut(s) 69, 222, 468
BpmI CTGGAG 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 386
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 398
BseBI CCWGG 1 cut(s) 457
BseGI GGATG 3 cut(s) 213, 316, 625
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 2 cut(s) 143, 185
BseNI ACTGG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 487
BseYI CCCAGC 1 cut(s) 451
BsgI GTGCAG 2 cut(s) 66, 411
Bsh1236I CGCG 1 cut(s) 434
Bsh1285I CGRYCG 1 cut(s) 564
BshTI ACCGGT 1 cut(s) 386
BsiEI CGRYCG 1 cut(s) 564
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 435
Bso31I GGTCTC 1 cut(s) 272
BspACI CCGC 1 cut(s) 419
BspCNI CTCAG 2 cut(s) 144, 184
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 386
BsrI ACTGG 1 cut(s) 312
BssAI RCCGGY 1 cut(s) 386
BssNI GRCGYC 1 cut(s) 516
Bst2UI CCWGG 1 cut(s) 457
Bst4CI ACNGT 2 cut(s) 71, 262
BstACI GRCGYC 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 3 cut(s) 152, 171, 554
BstF5I GGATG 3 cut(s) 213, 316, 625
BstFNI CGCG 1 cut(s) 434
BstMAI GTCTC 1 cut(s) 272
BstMCI CGRYCG 1 cut(s) 564
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 457
BstNSI RCATGY 1 cut(s) 597
BstSCI CCNGG 1 cut(s) 455
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 487
BtrI CACGTC 1 cut(s) 468
BtsCI GGATG 3 cut(s) 213, 316, 625
BtsI GCAGTG 2 cut(s) 78, 399
BtsIMutI CAGTG 3 cut(s) 78, 179, 399
Cac8I GCNNGC 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 422
CspAI ACCGGT 1 cut(s) 386
CviAII CATG 2 cut(s) 358, 594
CviJI RGCY 8 cut(s) 146, 179, 283, 315, 455, 500, 570, 612
CviKI_1 RGCY 8 cut(s) 146, 179, 283, 315, 455, 500, 570, 612
DdeI CTNAG 3 cut(s) 152, 171, 554
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 455
EcoT22I ATGCAT 1 cut(s) 382
FaeI CATG 2 cut(s) 361, 597
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 1 cut(s) 435
FatI CATG 2 cut(s) 357, 593
FauI CCCGC 1 cut(s) 412
FauNDI CATATG 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 3 cut(s) 200, 323, 612
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 2 cut(s) 489, 609
GluI GCNGC 1 cut(s) 501
GsaI CCCAGC 1 cut(s) 455
GsuI CTGGAG 1 cut(s) 254
HapII CCGG 1 cut(s) 387
Hin1I GRCGYC 1 cut(s) 516
Hin1II CATG 2 cut(s) 361, 597
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 3 cut(s) 154, 436, 460
HpaII CCGG 1 cut(s) 387
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 2 cut(s) 109, 344
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 3 cut(s) 106, 340, 407
HpyCH4III ACNGT 2 cut(s) 71, 262
HpyCH4IV ACGT 2 cut(s) 467, 516
HpyCH4V TGCA 8 cut(s) 26, 83, 293, 299, 380, 392, 503, 591
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 3 cut(s) 152, 171, 554
HpySE526I ACGT 2 cut(s) 467, 516
Hsp92I GRCGYC 1 cut(s) 516
Hsp92II CATG 2 cut(s) 361, 597
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 3 cut(s) 69, 222, 468
MaeI CTAG 2 cut(s) 489, 609
MaeII ACGT 2 cut(s) 467, 516
MaeIII GTNAC 4 cut(s) 32, 242, 336, 394
MfeI CAATTG 2 cut(s) 471, 504
MluCI AATT 3 cut(s) 93, 471, 504
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 5 cut(s) 180, 184, 435, 490, 616
Mph1103I ATGCAT 1 cut(s) 382
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 1 cut(s) 457
MunI CAATTG 2 cut(s) 471, 504
MvaI CCWGG 1 cut(s) 457
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeI CATATG 1 cut(s) 295
NlaIII CATG 2 cut(s) 361, 597
NlaIV GGNNCC 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 394
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 1 cut(s) 597
PfeI GAWTC 2 cut(s) 436, 460
PinAI ACCGGT 1 cut(s) 386
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PpuMI RGGWCCY 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 455
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 1 cut(s) 422
PspPPI RGGWCCY 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 345
SatI GCNGC 1 cut(s) 501
Sau96I GGNCC 1 cut(s) 422
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 457
SetI ASST 6 cut(s) 148, 195, 427, 470, 519, 614
SfaNI GCATC 3 cut(s) 69, 222, 468
SgrAI CRCCGGYG 1 cut(s) 386
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 345
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 3 cut(s) 93, 471, 504
SsiI CCGC 1 cut(s) 419
SspMI CTAG 2 cut(s) 489, 609
StyD4I CCNGG 1 cut(s) 455
TaaI ACNGT 2 cut(s) 71, 262
TaiI ACGT 2 cut(s) 470, 519
TaqI TCGA 2 cut(s) 63, 560
TaqII GACCGA 2 cut(s) 254, 578
TasI AATT 3 cut(s) 93, 471, 504
TfiI GAWTC 2 cut(s) 436, 460
TscAI CASTG 3 cut(s) 85, 179, 399
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 3 cut(s) 85, 179, 399
VpaK11BI GGWCC 1 cut(s) 422
XceI RCATGY 1 cut(s) 597
XspI CTAG 2 cut(s) 489, 609
ZraI GACGTC 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.