Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Reverse (-)

33951747 .. 33954740

Gene Structure 2994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAGCAAGTTCAGAGGTTCTTCACGGCAAGAAGATGACATTGATGATGTGTGGACGCCAAAGTCAGCGGCAAATCTTTGGGTGTTCCTGACTCGGGGTAAGAAAACGGTCCCGCCAACCGAAAATGTTAAATCAAGATGTGCCAAGAAACTAAAGACAACATTAGTATCGGTCGAAGATCAAGAAGCTATCGCAAAAACCGATCAGTCTCTAGGCAATGTTAACCGCACTTATGAGGACGGGGTTGAAGAAGGATTCAACATGTTCAAGATATTTGCCGCGAAGACAAATCCACGAGGAGGATGGCCCAAAGTTACAATGGCCAAAGCAAGGGATGCTGTCAGTAAGAACGGCAACGCTATTCCAAAAGTGTTTGCAGAAAAACACTTGGAAAGCCACCTAACAAGGAGGTTGGTGTTGTTGTTTCTAAATGGAATACCGGACCCCTCGTTTGGATGCTCCTTTGTTAGACATGAGACAGAATATTACTTGGGTAATGGTTGGAGTAGATGTTTGCACTATATTAATGAGAGAAAAGATGAGCTCAATTTGGTTTTCAATTTCGACGCTGATACCATGAGATTTTATATTACAAGATTTGACGAAGAAGACAATATGATTCGATCTATTCCATACCTCGGAATGGGCACCCATCCTGTGCATGTATTTGGAATGGAACAGATGAGCGTAGAGCAAATATATTCTGTGGATAGTGGTGTCAATGATCACGTGGTTATCATAAGGGGTCTTTTTCGTGACCGATTACAAGCTGTTGGAATTCCAGATTACTTTACAATGAAGCTTGAAACTAACCCTGAAATGTTTTGGGAAATTAAAGTGGCATATGTTGGCAAACACGGGGCTGTAATATTTGATCGCGCCACAGGGGTAGTAGTCACGTCTTCGTTAATCCCTGGCAACCAAGCCAATTATTCAAATGCCAGTCATTCGAATGCAGGTCCGTCAAACGTAGTTGGTGATGGGATAGAGGAACTCGTTGAAGAAGCTACTGAAGACGTGCCGATGGATGATGAAGTATGGCTGGTAGTTGGTCAAGCCTATAATGCAGATGAGCTTGACAGATACCCATATTGCAAATGCAATTTACAGGCTTGTCATGGTGTAAGTTCGCATCTTCACCTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

43.03

Weight (kDa)

5.59

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	947
AccB1I	GGYRCC	1 cut(s)	647
AccII	CGCG	2 cut(s)	281, 879
AciI	CCGC	4 cut(s)	68, 113, 226, 279
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	777
AcuI	CTGAAG	1 cut(s)	1032
AcvI	CACGTG	1 cut(s)	730
AcyI	GRCGYC	1 cut(s)	56
AfiI	CCNNNNNNNGG	6 cut(s)	94, 299, 330, 452, 638, 643
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	7 cut(s)	248, 259, 268, 559, 806, 936, 1001
AjiI	CACGTC	2 cut(s)	900, 1018
AjnI	CCWGG	1 cut(s)	913
AluBI	AGCT	6 cut(s)	188, 544, 770, 802, 1007, 1075
AluI	AGCT	6 cut(s)	188, 544, 770, 802, 1007, 1075
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	2 cut(s)	213, 470
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	2 cut(s)	305, 321
ApoI	RAATTY	1 cut(s)	777
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AseI	ATTAAT	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	881
AspS9I	GGNCC	4 cut(s)	109, 306, 442, 959
AsuHPI	GGTGA	2 cut(s)	989, 1130
AsuII	TTCGAA	1 cut(s)	950
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	3 cut(s)	109, 442, 959
BaeGI	GKGCMC	1 cut(s)	650
BaeI	ACNNNNGTAYC	2 cut(s)	150, 183
BalI	TGGCCA	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	546
BauI	CACGAG	1 cut(s)	294
BbrPI	CACGTG	1 cut(s)	730
BbsI	GAAGAC	4 cut(s)	290, 615, 894, 1020
Bbv12I	GWGCWC	1 cut(s)	546
BccI	CCATC	4 cut(s)	297, 660, 974, 1018
BceAI	ACGGC	2 cut(s)	41, 367
BciT130I	CCWGG	1 cut(s)	915
BclI	TGATCA	1 cut(s)	724
BcoDI	GTCTC	2 cut(s)	213, 470
BfaI	CTAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	947
BisI	GCNGC	2 cut(s)	69, 279
BlsI	GCNGC	2 cut(s)	70, 280
Bme1390I	CCNGG	1 cut(s)	915
Bme18I	GGWCC	3 cut(s)	109, 442, 959
BmeT110I	CYCGRG	1 cut(s)	93
BmgBI	CACGTC	2 cut(s)	900, 1018
BmgT120I	GGNCC	4 cut(s)	109, 306, 442, 959
BmiI	GGNNCC	3 cut(s)	111, 444, 649
BmrFI	CCNGG	1 cut(s)	915
BmsI	GCATC	3 cut(s)	325, 446, 1141
BpiI	GAAGAC	4 cut(s)	290, 615, 894, 1020
Bpu14I	TTCGAA	1 cut(s)	950
BsaAI	YACGTR	1 cut(s)	730
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	637, 913
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	6 cut(s)	94, 299, 330, 452, 638, 643
Bse1I	ACTGG	1 cut(s)	942
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	915
BseDI	CCNNGG	2 cut(s)	637, 913
BseGI	GGATG	5 cut(s)	308, 340, 461, 652, 1033
BseLI	CCNNNNNNNGG	6 cut(s)	94, 299, 330, 452, 638, 643
BseMI	GCAATG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	942
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	650
Bsh1236I	CGCG	2 cut(s)	281, 879
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	307, 323
BshNI	GGYRCC	1 cut(s)	647
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	6 cut(s)	94, 299, 330, 452, 638, 643
BsmAI	GTCTC	2 cut(s)	213, 470
BsmFI	GGGAC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	958
BsnI	GGCC	2 cut(s)	307, 323
BsoBI	CYCGRG	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	950
Bsp1286I	GDGCHC	2 cut(s)	546, 650
Bsp143I	GATC	5 cut(s)	178, 202, 623, 724, 874
BspACI	CCGC	4 cut(s)	68, 113, 226, 279
BspANI	GGCC	2 cut(s)	307, 323
BspFNI	CGCG	2 cut(s)	281, 879
BspLI	GGNNCC	3 cut(s)	111, 444, 649
BspMI	ACCTGC	1 cut(s)	947
BspT104I	TTCGAA	1 cut(s)	950
BspT107I	GGYRCC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	942
BssECI	CCNNGG	2 cut(s)	637, 913
BssMI	GATC	5 cut(s)	178, 202, 623, 724, 874
BssNI	GRCGYC	1 cut(s)	56
BssSI	CACGAG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	915
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	730
BstBI	TTCGAA	1 cut(s)	950
BstF5I	GGATG	5 cut(s)	308, 340, 461, 652, 1033
BstFNI	CGCG	2 cut(s)	281, 879
BstHHI	GCGC	1 cut(s)	881
BstKTI	GATC	5 cut(s)	181, 205, 626, 727, 877
BstMAI	GTCTC	2 cut(s)	213, 470
BstMBI	GATC	5 cut(s)	178, 202, 623, 724, 874
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 1064
BstNI	CCWGG	1 cut(s)	915
BstNSI	RCATGY	2 cut(s)	265, 665
BstSCI	CCNGG	1 cut(s)	913
BstSLI	GKGCMC	1 cut(s)	650
BstUI	CGCG	2 cut(s)	281, 879
BstV2I	GAAGAC	4 cut(s)	290, 615, 894, 1020
BsuRI	GGCC	2 cut(s)	307, 323
BtrI	CACGTC	2 cut(s)	900, 1018
BtsCI	GGATG	5 cut(s)	308, 340, 461, 652, 1033
BveI	ACCTGC	1 cut(s)	947
CfoI	GCGC	1 cut(s)	881
Cfr13I	GGNCC	4 cut(s)	109, 306, 442, 959
CseI	GACGC	2 cut(s)	64, 575
CviAII	CATG	5 cut(s)	262, 473, 577, 662, 1118
DpnI	GATC	5 cut(s)	180, 204, 625, 726, 876
DpnII	GATC	5 cut(s)	178, 202, 623, 724, 874
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	546
Eco47I	GGWCC	3 cut(s)	109, 442, 959
Eco53kI	GAGCTC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	1032
Eco72I	CACGTG	1 cut(s)	730
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	777
EcoRII	CCWGG	1 cut(s)	913
EcoT38I	GRGCYC	1 cut(s)	546
FaeI	CATG	5 cut(s)	265, 476, 580, 665, 1121
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	5 cut(s)	261, 472, 576, 661, 1117
FauI	CCCGC	1 cut(s)	120
FauNDI	CATATG	1 cut(s)	844
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	2 cut(s)	69, 279
FokI	GGATG	5 cut(s)	315, 347, 468, 639, 1040
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	2 cut(s)	69, 279
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	880
GluI	GCNGC	2 cut(s)	69, 279
HaeIII	GGCC	2 cut(s)	307, 323
HapII	CCGG	1 cut(s)	440
HgaI	GACGC	2 cut(s)	64, 575
HhaI	GCGC	1 cut(s)	881
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	5 cut(s)	265, 476, 580, 665, 1121
Hin6I	GCGC	1 cut(s)	879
HinP1I	GCGC	1 cut(s)	879
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	800
HinfI	GANTC	3 cut(s)	91, 255, 619
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	2 cut(s)	989, 1130
Hpy166II	GTNNAC	2 cut(s)	54, 223
Hpy188I	TCNGA	2 cut(s)	14, 641
Hpy188III	TCNNGA	6 cut(s)	88, 135, 182, 268, 755, 782
Hpy8I	GTNNAC	2 cut(s)	54, 223
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	4 cut(s)	729, 899, 969, 1017
HpyCH4V	TGCA	7 cut(s)	377, 517, 661, 956, 1067, 1095, 1101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 1064
HpySE526I	ACGT	4 cut(s)	729, 899, 969, 1017
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	5 cut(s)	265, 476, 580, 665, 1121
HspAI	GCGC	1 cut(s)	879
Ksp22I	TGATCA	1 cut(s)	724
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	178, 202, 623, 724, 874
LmnI	GCTCC	1 cut(s)	464
LweI	GCATC	3 cut(s)	325, 446, 1141
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	4 cut(s)	729, 899, 969, 1017
MaeIII	GTNAC	3 cut(s)	313, 755, 895
MalI	GATC	5 cut(s)	180, 204, 625, 726, 876
MboI	GATC	5 cut(s)	178, 202, 623, 724, 874
MhlI	GDGCHC	2 cut(s)	546, 650
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	6 cut(s)	547, 559, 777, 831, 928, 1102
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	2 cut(s)	482, 754
MnlI	CCTC	8 cut(s)	8, 229, 290, 293, 402, 457, 647, 982
Mox20I	TGGCCA	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	5 cut(s)	129, 222, 525, 834, 908
MslI	CAYNNNNRTG	1 cut(s)	951
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	915
Mva1269I	GAATGC	1 cut(s)	958
MvaI	CCWGG	1 cut(s)	915
MvnI	CGCG	2 cut(s)	281, 879
MwoI	GCNNNNNNNGC	2 cut(s)	335, 1064
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	5 cut(s)	178, 202, 623, 724, 874
NlaIII	CATG	5 cut(s)	265, 476, 580, 665, 1121
NlaIV	GGNNCC	3 cut(s)	111, 444, 649
NmuCI	GTSAC	2 cut(s)	755, 895
NspI	RCATGY	2 cut(s)	265, 665
NspV	TTCGAA	1 cut(s)	950
PciI	ACATGT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	958
PfeI	GAWTC	2 cut(s)	255, 619
PkrI	GCNGC	2 cut(s)	70, 280
PleI	GAGTC	1 cut(s)	85
PmaCI	CACGTG	1 cut(s)	730
PmlI	CACGTG	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	730
PscI	ACATGT	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	913
PspCI	CACGTG	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	913
PspN4I	GGNNCC	3 cut(s)	111, 444, 649
PspPI	GGNCC	4 cut(s)	109, 306, 442, 959
RseI	CAYNNNNRTG	1 cut(s)	951
SacI	GAGCTC	1 cut(s)	546
SaqAI	TTAA	5 cut(s)	129, 222, 525, 834, 908
SatI	GCNGC	2 cut(s)	69, 279
Sau3AI	GATC	5 cut(s)	178, 202, 623, 724, 874
Sau96I	GGNCC	4 cut(s)	109, 306, 442, 959
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	915
SduI	GDGCHC	2 cut(s)	546, 650
SfaNI	GCATC	3 cut(s)	325, 446, 1141
SfuI	TTCGAA	1 cut(s)	950
SinI	GGWCC	3 cut(s)	109, 442, 959
SmiMI	CAYNNNNRTG	1 cut(s)	951
Sse9I	AATT	6 cut(s)	547, 559, 777, 831, 928, 1102
SsiI	CCGC	4 cut(s)	68, 113, 226, 279
SspI	AATATT	2 cut(s)	485, 870
SspMI	CTAG	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	913
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	4 cut(s)	732, 902, 972, 1020
TaqI	TCGA	4 cut(s)	174, 564, 622, 950
TaqII	GACCGA	2 cut(s)	160, 774
TasI	AATT	6 cut(s)	547, 559, 777, 831, 928, 1102
TauI	GCSGC	2 cut(s)	71, 281
TfiI	GAWTC	2 cut(s)	255, 619
Tru1I	TTAA	5 cut(s)	129, 222, 525, 834, 908
Tru9I	TTAA	5 cut(s)	129, 222, 525, 834, 908
TseFI	GTSAC	2 cut(s)	755, 895
Tsp45I	GTSAC	2 cut(s)	755, 895
TspDTI	ATGAA	2 cut(s)	812, 1047
TspGWI	ACGGA	1 cut(s)	951
VpaK11BI	GGWCC	3 cut(s)	109, 442, 959
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	1 cut(s)	777
XceI	RCATGY	2 cut(s)	265, 665
XcmI	CCANNNNNNNNNTGG	2 cut(s)	300, 316
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.