Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Reverse (-)

41090396 .. 41091355

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013784

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCATTGCATCTTCATATGCAAGGTTGTAAGAAAAGCTGGTTCTTCAAGTCAAGAAGATGACATTGATGATGTGTGGATGCCCAATTCAGCTGCAAATTTTCAGATTTTCCCGAGTCGTGATAAGGATAAAGCCCTGTCAACTGAAGACGTTAAATCAAGATGTGCCAAAAAATTCAAGATGGAGCAATTGTCGGTCAAATATGATGATCCTATTGCAAAGACCGATCAAGCACCAGACAAGGTCGGTCGCAGTTATGAGGATAGTATTCATGAAAGATTCAACACGTTCAAGAAATTTACCGCGAAGACAAATCCACTAGGGGGATGGGCCAATGTTTTAATGGACCAAGCAAGGATACTGTTAGTAAGGAAGCGCACGGCCGTCATAAAGAGAAATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.34

Weight (kDa)

9.43

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	305
AciI	CCGC	1 cut(s)	303
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	3 cut(s)	97, 173, 296
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	4 cut(s)	48, 178, 283, 292
AluBI	AGCT	2 cut(s)	38, 92
AluI	AGCT	2 cut(s)	38, 92
AlwI	GGATC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	330, 381
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	3 cut(s)	97, 173, 296
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	330, 346
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	346
BbsI	GAAGAC	2 cut(s)	153, 314
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	175, 321
BceAI	ACGGC	2 cut(s)	368, 396
BciVI	GTATCC	1 cut(s)	351
BfaI	CTAG	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	330, 346
BmsI	GCATC	2 cut(s)	18, 69
BpiI	GAAGAC	2 cut(s)	153, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	4
BseGI	GGATG	2 cut(s)	84, 332
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	4
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	305
Bsh1285I	CGRYCG	2 cut(s)	250, 384
BshFI	GGCC	2 cut(s)	332, 383
BsiEI	CGRYCG	2 cut(s)	250, 384
BsiHKCI	CYCGRG	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	323
BsnI	GGCC	2 cut(s)	332, 383
BsoBI	CYCGRG	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	208, 226
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	2 cut(s)	332, 383
BspFNI	CGCG	1 cut(s)	305
BspHI	TCATGA	1 cut(s)	271
BspPI	GGATC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	4
BssMI	GATC	2 cut(s)	208, 226
Bst4CI	ACNGT	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	84, 332
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	2 cut(s)	211, 229
BstMBI	GATC	2 cut(s)	208, 226
BstMCI	CGRYCG	2 cut(s)	250, 384
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	2 cut(s)	153, 314
BstZI	CGGCCG	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	332, 383
BtsCI	GGATG	2 cut(s)	84, 332
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	2 cut(s)	330, 346
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	5 cut(s)	38, 92, 134, 332, 383
CviKI_1	RGCY	5 cut(s)	38, 92, 134, 332, 383
DpnI	GATC	2 cut(s)	210, 228
DpnII	GATC	2 cut(s)	208, 226
EaeI	YGGCCR	1 cut(s)	381
EagI	CGGCCG	1 cut(s)	381
EclXI	CGGCCG	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	346
Eco52I	CGGCCG	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	275
FaiI	YATR	6 cut(s)	17, 19, 204, 258, 273, 389
FatI	CATG	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	2 cut(s)	91, 339
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	332, 383
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	2 cut(s)	115, 279
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	7 cut(s)	53, 112, 119, 159, 178, 272, 292
Hpy8I	GTNNAC	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4IV	ACGT	2 cut(s)	150, 287
HpyCH4V	TGCA	5 cut(s)	4, 9, 21, 95, 218
HpySE526I	ACGT	2 cut(s)	150, 287
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	208, 226
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	3 cut(s)	24, 149, 249
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	2 cut(s)	18, 69
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	2 cut(s)	150, 287
MalI	GATC	2 cut(s)	210, 228
MboI	GATC	2 cut(s)	208, 226
MboII	GAAGA	5 cut(s)	4, 36, 68, 158, 319
MfeI	CAATTG	1 cut(s)	188
MluCI	AATT	6 cut(s)	85, 97, 173, 188, 296, 400
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	1 cut(s)	253
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	153, 341, 403
MspA1I	CMGCKG	1 cut(s)	92
MunI	CAATTG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	305
NdeI	CATATG	1 cut(s)	17
NdeII	GATC	2 cut(s)	208, 226
NlaIII	CATG	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	279
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	330, 346
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	153, 341, 403
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	2 cut(s)	208, 226
Sau96I	GGNCC	2 cut(s)	330, 346
SchI	GAGTC	1 cut(s)	124
SetI	ASST	6 cut(s)	27, 40, 94, 153, 246, 290
SfaNI	GCATC	2 cut(s)	18, 69
SinI	GGWCC	1 cut(s)	346
Sse9I	AATT	6 cut(s)	85, 97, 173, 188, 296, 400
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	363
TaiI	ACGT	2 cut(s)	153, 290
TaqII	GACCGA	3 cut(s)	184, 236, 239
TasI	AATT	6 cut(s)	85, 97, 173, 188, 296, 400
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	3 cut(s)	153, 341, 403
Tru9I	TTAA	3 cut(s)	153, 341, 403
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	4, 260, 288
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	3 cut(s)	97, 173, 296
XcmI	CCANNNNNNNNNTGG	2 cut(s)	324, 340
XspI	CTAG	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.