Rh2BG394400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003970
Physical Location & Seq
Reverse (-)
55934080 .. 55934664
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG394400.1

Sequence Viewer

Length: 489 bp
ATGGCATTGAACAACAACAACCCTGCAAGGAGTTACGAGTTGCCTATGTTCTATGCCAGCATCGACAACAGTAATGACACTGCACACCCAATAATTCCAAGAGAGTTCAGGAAGGCAAACTTGTTTTATGACAAGTCAAAGATAGCTTTGCTGAGTCTAAATGGGTTGCCTCAGTGGGCTTGGGAGTGTGAGGTTGTTCATTTTGAGAACAGCTTATTGTTCAGTACACACCTTAAGTTTTGTGGTGCTGTTAGTGATGAGAACAGCATCCATCTAGTTTTCAACTACGAAGGTATTCCCATGAGGTTAACGGTGACAATATTTGATTGTAATGGGCATATACTGCGATCCCCACCAAACCTATATTCATACCAGGGACCTCCCCTCATTTACGAGGGTTTGGAACATCTAAAGGAAGATTGGTTCTGTGTTAACACACTTGTAATAGAGGACCACATGGTAAGCAAAGAGTCTATATATGTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.68

Weight (kDa)

5.41

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 342
AfaI GTAC 1 cut(s) 226
AflII CTTAAG 1 cut(s) 233
AgsI TTSAA 2 cut(s) 10, 283
AjnI CCWGG 1 cut(s) 372
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AloI GAACNNNNNNTCC 2 cut(s) 407, 439
AluBI AGCT 2 cut(s) 146, 213
AluI AGCT 2 cut(s) 146, 213
AlwI GGATC 1 cut(s) 342
Asp700I GAANNNNTTC 1 cut(s) 294
AspS9I GGNCC 2 cut(s) 377, 451
AsuHPI GGTGA 1 cut(s) 325
AvaII GGWCC 2 cut(s) 377, 451
BccI CCATC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 374
BfaI CTAG 1 cut(s) 275
BfrI CTTAAG 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 2 cut(s) 377, 451
BmgT120I GGNCC 2 cut(s) 377, 451
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 374
BmsI GCATC 2 cut(s) 69, 276
BsaJI CCNNGG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 143, 185
BsgI GTGCAG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 390
BsmFI GGGAC 1 cut(s) 390
Bsp143I GATC 1 cut(s) 347
BspCNI CTCAG 2 cut(s) 144, 184
BspLI GGNNCC 1 cut(s) 378
BspPI GGATC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 71, 313
BstAFI CTTAAG 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 152, 171
BstF5I GGATG 1 cut(s) 267
BstKTI GATC 1 cut(s) 350
BstMBI GATC 1 cut(s) 347
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BtsCI GGATG 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 179
Cac8I GCNNGC 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 377, 451
Csp6I GTAC 1 cut(s) 225
CviAII CATG 2 cut(s) 301, 457
CviJI RGCY 3 cut(s) 146, 179, 213
CviKI_1 RGCY 3 cut(s) 146, 179, 213
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 2 cut(s) 152, 171
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 377, 451
EcoO109I RGGNCCY 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 372
FaeI CATG 2 cut(s) 304, 460
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 1 cut(s) 390
FatI CATG 2 cut(s) 300, 456
FokI GGATG 1 cut(s) 254
FspBI CTAG 1 cut(s) 275
Hin1II CATG 2 cut(s) 304, 460
HincII GTYRAC 2 cut(s) 309, 433
HindII GTYRAC 2 cut(s) 309, 433
HinfI GANTC 2 cut(s) 154, 470
HpaI GTTAAC 2 cut(s) 309, 433
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 3 cut(s) 227, 309, 433
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 3 cut(s) 227, 309, 433
HpyAV CCTTC 2 cut(s) 106, 284
HpyCH4III ACNGT 2 cut(s) 71, 313
HpyCH4V TGCA 2 cut(s) 26, 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpyF3I CTNAG 2 cut(s) 152, 171
Hsp92II CATG 2 cut(s) 304, 460
KspAI GTTAAC 2 cut(s) 309, 433
Kzo9I GATC 1 cut(s) 347
LpnPI CCDG 5 cut(s) 36, 70, 94, 359, 386
LweI GCATC 2 cut(s) 69, 276
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 32, 313
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 1 cut(s) 428
MluCI AATT 1 cut(s) 93
MlyI GAGTC 2 cut(s) 163, 479
MnlI CCTC 7 cut(s) 180, 184, 297, 388, 390, 395, 442
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 3 cut(s) 234, 308, 432
MspCI CTTAAG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 343
NdeII GATC 1 cut(s) 347
NlaIII CATG 2 cut(s) 304, 460
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 294
PleI GAGTC 2 cut(s) 162, 478
PpsI GAGTC 2 cut(s) 162, 478
PpuMI RGGWCCY 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 377, 451
PspPPI RGGWCCY 1 cut(s) 377
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SaqAI TTAA 3 cut(s) 234, 308, 432
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 2 cut(s) 377, 451
SchI GAGTC 2 cut(s) 163, 479
ScrFI CCNGG 1 cut(s) 374
SetI ASST 8 cut(s) 148, 195, 215, 234, 295, 308, 363, 382
SfaNI GCATC 2 cut(s) 69, 276
SinI GGWCC 2 cut(s) 377, 451
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 93
SspI AATATT 1 cut(s) 321
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 71, 313
TaqI TCGA 1 cut(s) 63
TasI AATT 1 cut(s) 93
TatI WGTACW 1 cut(s) 224
Tru1I TTAA 3 cut(s) 234, 308, 432
Tru9I TTAA 3 cut(s) 234, 308, 432
TscAI CASTG 2 cut(s) 85, 179
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 188, 357
TspRI CASTG 2 cut(s) 85, 179
Vha464I CTTAAG 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 377, 451
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.