Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Forward (+)

28229868 .. 28235322

Gene Structure 5455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG174200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTAATTGCAATTAATTACTTACTGAACCATACAGAGTTGAGACTGGAAAATGTGCACATAAGCCCAATGGATAGACACATTAAAGGGCCGGAATGGGGGTGGGAGACAGATATTCAATCCAGTTCAAAGGGTGGGATTTTTTTTTGTGAATGTAAATTGAGTGAGGCTAACTGTGTCAAGTTCATGTCGGCATTAATATTTAACCATAAAAATGGTGAGTTGGTATTGCCTTTGTTTGGGTTTCATCATGACGAAGATGATCCGTTTAGGCCTGGTCCTTCCAATACTGATCCGAATGAGCTAGTGCCATATGAGGCAGTCTCGAATGAGGAAGAACCAAATGCGGAGGTGCCTAATAAGGGGTTTTACTTGGAATTTGGGCAATCATTTCAATTGGAACAATTACAACGCCTTCCAAGTTGCACGGCCACATTTTACGATCACATGGGGTTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin Pkinase

Protein Analysis

153

Amino Acids

17.46

Weight (kDa)

4.77

Isoelectric Point (pI)

64.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	2 cut(s)	257, 287
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	377
AfiI	CCNNNNNNNGG	3 cut(s)	98, 239, 362
AgsI	TTSAA	3 cut(s)	119, 129, 395
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	3 cut(s)	37, 101, 328
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	257, 287
AoxI	GGCC	3 cut(s)	89, 272, 429
ApaLI	GTGCAC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	377
AseI	ATTAAT	2 cut(s)	15, 197
AspS9I	GGNCC	2 cut(s)	89, 278
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	60
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	37, 101, 328
BfaI	CTAG	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	89, 278
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 239, 362
Bse1I	ACTGG	2 cut(s)	51, 123
BseBI	CCWGG	1 cut(s)	276
BseLI	CCNNNNNNNGG	3 cut(s)	98, 239, 362
BseNI	ACTGG	2 cut(s)	51, 123
BseSI	GKGCMC	1 cut(s)	60
BshFI	GGCC	3 cut(s)	91, 274, 431
BshNI	GGYRCC	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	3 cut(s)	98, 239, 362
BsmAI	GTCTC	3 cut(s)	37, 101, 328
BsnI	GGCC	3 cut(s)	91, 274, 431
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	262, 292, 442
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	3 cut(s)	91, 274, 431
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	2 cut(s)	257, 287
BspT107I	GGYRCC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	51, 123
BssMI	GATC	3 cut(s)	262, 292, 442
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	176
BstKTI	GATC	3 cut(s)	265, 295, 445
BstMAI	GTCTC	3 cut(s)	37, 101, 328
BstMBI	GATC	3 cut(s)	262, 292, 442
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	91, 274, 431
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	89, 278
CviAII	CATG	3 cut(s)	187, 251, 448
CviJI	RGCY	6 cut(s)	66, 91, 170, 274, 304, 431
CviKI_1	RGCY	6 cut(s)	66, 91, 170, 274, 304, 431
DpnI	GATC	3 cut(s)	264, 294, 444
DpnII	GATC	3 cut(s)	262, 292, 442
EaeI	YGGCCR	1 cut(s)	429
Eco147I	AGGCCT	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	274
FaeI	CATG	3 cut(s)	190, 254, 451
FaiI	YATR	9 cut(s)	33, 62, 188, 210, 252, 313, 315, 449, 460
FatI	CATG	3 cut(s)	186, 250, 447
FauNDI	CATATG	1 cut(s)	313
FspBI	CTAG	1 cut(s)	305
HaeIII	GGCC	3 cut(s)	91, 274, 431
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	3 cut(s)	190, 254, 451
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	2 cut(s)	251, 325
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	291, 425
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	11, 58, 426
Hsp92II	CATG	3 cut(s)	190, 254, 451
Kzo9I	GATC	3 cut(s)	262, 292, 442
LpnPI	CCDG	5 cut(s)	32, 105, 136, 261, 288
MaeI	CTAG	1 cut(s)	305
MalI	GATC	3 cut(s)	264, 294, 444
MboI	GATC	3 cut(s)	262, 292, 442
MboII	GAAGA	2 cut(s)	269, 347
MfeI	CAATTG	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	7 cut(s)	6, 12, 16, 158, 377, 395, 404
MnlI	CCTC	4 cut(s)	160, 310, 325, 343
MseI	TTAA	5 cut(s)	5, 15, 84, 197, 204
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	276
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	3 cut(s)	262, 292, 442
NlaIII	CATG	3 cut(s)	190, 254, 451
NlaIV	GGNNCC	1 cut(s)	354
PagI	TCATGA	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	274
PshBI	ATTAAT	2 cut(s)	15, 197
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	89, 278
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	5 cut(s)	5, 15, 84, 197, 204
Sau3AI	GATC	3 cut(s)	262, 292, 442
Sau96I	GGNCC	2 cut(s)	89, 278
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	2 cut(s)	306, 354
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	7 cut(s)	6, 12, 16, 158, 377, 395, 404
SseBI	AGGCCT	1 cut(s)	274
SsiI	CCGC	1 cut(s)	347
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	305
StuI	AGGCCT	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	326
TasI	AATT	7 cut(s)	6, 12, 16, 158, 377, 395, 404
Tru1I	TTAA	5 cut(s)	5, 15, 84, 197, 204
Tru9I	TTAA	5 cut(s)	5, 15, 84, 197, 204
TspDTI	ATGAA	2 cut(s)	175, 236
TspGWI	ACGGA	1 cut(s)	255
VneI	GTGCAC	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	2 cut(s)	15, 197
XapI	RAATTY	1 cut(s)	377
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.