Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Forward (+)

32763780 .. 32765171

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGACGTTCGTCGTCACTAGGTTCGATGGATTCGGACATCTAATGCGAACCCCACCTGACATGGCCCATACCCCCAATCCACCCTCCATTGCAGGTTTGGAACAGCTAAACGAAGAGTACTTTTACGATGTTGGACGACACAACTGGTACGATGGTGAAATACAGTTGATCATCGTTGACGGTCCATTTCTTGCTAGTCTGTGGGAAGCCGGGATTCCTTCCACATACACCATTCAGCTAGAGACACACCGTCAGATGGTATGGAAAATACAGGTGGAACCTTTTGGTATTGCTTCAGTGCACTTTAATGTTGGGTGGTCGAGGTTTGCACATGACACCGGGTTGAATTCTTCGCACTGTCTGAAGTTGAGGTTGTTCGATGGTGGGTTGATAACGGCTGTCATATTCCATAGTAGGAAGGGCCACCTTATTACCCCGGAAATGACTAATGCGAACCAAGGGAGCAGCTTCACTGGTGCTGTTCCTTCCCATGGAGGAGCCTCCAATTTGAACGCTGCTTCGTCCAACGTAGGCACCATACTTCAGGACGGAGGGGCTGTCGATATTGAAGACAATGGAGAACCCTATGTCATTGGCCGTGTTTGGGAGATGCAAGTTCATGACGACATCAGCCGGGAGCTGCAATGGTTTCCGGCATGCACTATGATGGTTTACGAATCATTCGCCTACTTGCCTCAAAGTTTTGTCGCCGCACACAACATTGCACTACGCAAAGAAGTGTTCATTTTCCAAAGTTTGGCAGGAGACGCCATGCTGTTGAAGTTGGTTCCTCACTGCAATACCCTATTTCTGACCGAAGGGTACCCAGCATTCAAGCAACACTTCCAGTTGATAACAAACTCTGAACTGTCCCTCCATATGGTTGGGATGACCCATTTTGTTTTCAACATCGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

34.14

Weight (kDa)

5.57

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
Acc65I	GGTACC	1 cut(s)	822
AccB1I	GGYRCC	2 cut(s)	533, 822
AccB7I	CCANNNNNTGG	1 cut(s)	757
AciI	CCGC	1 cut(s)	711
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	3 cut(s)	279, 383, 527
AcyI	GRCGYC	1 cut(s)	768
AfaI	GTAC	3 cut(s)	119, 149, 824
AfiI	CCNNNNNNNGG	5 cut(s)	256, 491, 604, 757, 880
AgsI	TTSAA	6 cut(s)	346, 511, 569, 781, 835, 907
AhdI	GACNNNNNGTC	1 cut(s)	249
AloI	GAACNNNNNNTCC	2 cut(s)	858, 890
AluBI	AGCT	4 cut(s)	106, 238, 468, 640
AluI	AGCT	4 cut(s)	106, 238, 468, 640
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	236, 759
Alw44I	GTGCAC	1 cut(s)	299
AoxI	GGCC	3 cut(s)	63, 421, 595
ApaLI	GTGCAC	1 cut(s)	299
ApeKI	GCWGC	3 cut(s)	465, 515, 640
ApoI	RAATTY	1 cut(s)	346
Asp718I	GGTACC	1 cut(s)	822
AspS9I	GGNCC	3 cut(s)	64, 182, 421
AsuC2I	CCSGG	4 cut(s)	211, 340, 437, 635
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	303
BaeI	ACNNNNGTAYC	2 cut(s)	139, 172
BanI	GGYRCC	2 cut(s)	533, 822
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	477, 502, 627
BccI	CCATC	5 cut(s)	20, 146, 250, 374, 661
BceAI	ACGGC	2 cut(s)	411, 582
BclI	TGATCA	1 cut(s)	168
BcnI	CCSGG	4 cut(s)	211, 340, 437, 635
BcoDI	GTCTC	2 cut(s)	236, 759
BfaI	CTAG	3 cut(s)	18, 195, 239
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	4 cut(s)	466, 516, 641, 711
BlsI	GCNGC	4 cut(s)	467, 517, 642, 712
BmcAI	AGTACT	1 cut(s)	119
Bme1390I	CCNGG	4 cut(s)	211, 340, 437, 635
Bme18I	GGWCC	1 cut(s)	182
BmeRI	GACNNNNNGTC	1 cut(s)	249
BmgT120I	GGNCC	3 cut(s)	64, 182, 421
BmiI	GGNNCC	5 cut(s)	279, 499, 535, 789, 824
BmrFI	CCNGG	4 cut(s)	211, 340, 437, 635
BmsI	GCATC	1 cut(s)	600
BoxI	GACNNNNGTC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	576
BpuMI	CCSGG	4 cut(s)	211, 340, 437, 635
BsaHI	GRCGYC	1 cut(s)	768
BsaJI	CCNNGG	3 cut(s)	435, 457, 490
BsaXI	ACNNNNNCTCC	4 cut(s)	543, 573, 858, 888
Bsc4I	CCNNNNNNNGG	5 cut(s)	256, 491, 604, 757, 880
Bse1I	ACTGG	3 cut(s)	149, 478, 847
Bse3DI	GCAATG	3 cut(s)	87, 650, 720
BseDI	CCNNGG	3 cut(s)	435, 457, 490
BseGI	GGATG	1 cut(s)	894
BseLI	CCNNNNNNNGG	5 cut(s)	256, 491, 604, 757, 880
BseMI	GCAATG	3 cut(s)	87, 650, 720
BseNI	ACTGG	3 cut(s)	149, 478, 847
BseRI	GAGGAG	1 cut(s)	510
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	3 cut(s)	477, 502, 627
BseYI	CCCAGC	1 cut(s)	826
BshFI	GGCC	3 cut(s)	65, 423, 597
BshNI	GGYRCC	2 cut(s)	533, 822
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	5 cut(s)	210, 339, 437, 634, 653
BslFI	GGGAC	1 cut(s)	856
BslI	CCNNNNNNNGG	5 cut(s)	256, 491, 604, 757, 880
BsmAI	GTCTC	2 cut(s)	236, 759
BsmBI	CGTCTC	1 cut(s)	759
BsmFI	GGGAC	1 cut(s)	856
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	3 cut(s)	65, 423, 597
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	1 cut(s)	711
BspANI	GGCC	3 cut(s)	65, 423, 597
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	5 cut(s)	279, 499, 535, 789, 824
BspMI	ACCTGC	1 cut(s)	83
BspT107I	GGYRCC	2 cut(s)	533, 822
BsrDI	GCAATG	3 cut(s)	87, 650, 720
BsrI	ACTGG	3 cut(s)	149, 478, 847
BssECI	CCNNGG	3 cut(s)	435, 457, 490
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	1 cut(s)	768
BssT1I	CCWWGG	2 cut(s)	457, 490
Bst4CI	ACNGT	5 cut(s)	165, 182, 251, 359, 870
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	768
BstC8I	GCNNGC	1 cut(s)	658
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	894
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	2 cut(s)	236, 759
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	767
BstNSI	RCATGY	1 cut(s)	660
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	4 cut(s)	209, 338, 435, 633
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	477, 502, 627
BstV2I	GAAGAC	1 cut(s)	576
BstXI	CCANNNNNNTGG	1 cut(s)	884
BsuRI	GGCC	3 cut(s)	65, 423, 597
BtgI	CCRYGG	1 cut(s)	490
BtgZI	GCGATG	1 cut(s)	895
BtsCI	GGATG	1 cut(s)	894
BtsI	GCAGTG	1 cut(s)	793
BtsIMutI	CAGTG	4 cut(s)	303, 355, 471, 793
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	658
CciI	TCATGA	1 cut(s)	619
Cfr13I	GGNCC	3 cut(s)	64, 182, 421
CseI	GACGC	1 cut(s)	776
Csp6I	GTAC	3 cut(s)	118, 148, 823
CviAII	CATG	7 cut(s)	61, 332, 491, 620, 657, 772, 918
CviQI	GTAC	3 cut(s)	118, 148, 823
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
DriI	GACNNNNNGTC	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	108
Eam1105I	GACNNNNNGTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	2 cut(s)	457, 490
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	3 cut(s)	279, 383, 527
EcoRI	GAATTC	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	457, 490
ErhI	CCWWGG	2 cut(s)	457, 490
Esp3I	CGTCTC	1 cut(s)	759
FaeI	CATG	7 cut(s)	64, 335, 494, 623, 660, 775, 921
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	1 cut(s)	856
FatI	CATG	7 cut(s)	60, 331, 490, 619, 656, 771, 917
FauNDI	CATATG	1 cut(s)	879
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	4 cut(s)	466, 516, 641, 711
FokI	GGATG	1 cut(s)	901
Fsp4HI	GCNGC	4 cut(s)	466, 516, 641, 711
FspBI	CTAG	3 cut(s)	18, 195, 239
GluI	GCNGC	4 cut(s)	466, 516, 641, 711
GsaI	CCCAGC	1 cut(s)	830
HaeIII	GGCC	3 cut(s)	65, 423, 597
HapII	CCGG	5 cut(s)	210, 339, 437, 634, 653
HgaI	GACGC	1 cut(s)	776
Hin1I	GRCGYC	1 cut(s)	768
Hin1II	CATG	7 cut(s)	64, 335, 494, 623, 660, 775, 921
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	30, 214, 677
HpaII	CCGG	5 cut(s)	210, 339, 437, 634, 653
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	178, 301, 673
Hpy188I	TCNGA	5 cut(s)	35, 255, 363, 813, 865
Hpy188III	TCNNGA	2 cut(s)	545, 620
Hpy8I	GTNNAC	3 cut(s)	178, 301, 673
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	228, 412, 495, 812
HpyCH4III	ACNGT	5 cut(s)	165, 182, 251, 359, 870
HpyCH4IV	ACGT	2 cut(s)	5, 528
HpyCH4V	TGCA	8 cut(s)	92, 301, 329, 613, 643, 660, 725, 798
HpyF10VI	GCNNNNNNNGC	1 cut(s)	767
HpySE526I	ACGT	2 cut(s)	5, 528
Hsp92I	GRCGYC	1 cut(s)	768
Hsp92II	CATG	7 cut(s)	64, 335, 494, 623, 660, 775, 921
KpnI	GGTACC	1 cut(s)	826
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	462, 497, 637
Lsp1109I	GCAGC	3 cut(s)	477, 502, 627
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	3 cut(s)	18, 195, 239
MaeII	ACGT	2 cut(s)	5, 528
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	3 cut(s)	125, 342, 581
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	346, 505
MmeI	TCCRAC	2 cut(s)	112, 549
MnlI	CCTC	9 cut(s)	94, 315, 363, 488, 511, 545, 705, 801, 884
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	2 cut(s)	306, 665
MspI	CCGG	5 cut(s)	210, 339, 437, 634, 653
MspR9I	CCNGG	4 cut(s)	211, 340, 437, 635
Mva1269I	GAATGC	1 cut(s)	830
MwoI	GCNNNNNNNGC	1 cut(s)	767
NciI	CCSGG	4 cut(s)	211, 340, 437, 635
NcoI	CCATGG	1 cut(s)	490
NdeI	CATATG	1 cut(s)	879
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	7 cut(s)	64, 335, 494, 623, 660, 775, 921
NlaIV	GGNNCC	5 cut(s)	279, 499, 535, 789, 824
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	660
PaeI	GCATGC	1 cut(s)	660
PagI	TCATGA	1 cut(s)	619
PctI	GAATGC	1 cut(s)	830
PfeI	GAWTC	3 cut(s)	30, 214, 677
PflMI	CCANNNNNTGG	1 cut(s)	757
PkrI	GCNGC	4 cut(s)	467, 517, 642, 712
PshAI	GACNNNNGTC	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	826
PspN4I	GGNNCC	5 cut(s)	279, 499, 535, 789, 824
PspPI	GGNCC	3 cut(s)	64, 182, 421
RsaI	GTAC	3 cut(s)	119, 149, 824
RsaNI	GTAC	3 cut(s)	118, 148, 823
RseI	CAYNNNNRTG	2 cut(s)	306, 665
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	4 cut(s)	466, 516, 641, 711
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	3 cut(s)	64, 182, 421
ScaI	AGTACT	1 cut(s)	119
ScrFI	CCNGG	4 cut(s)	211, 340, 437, 635
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	1 cut(s)	600
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	306, 665
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	2 cut(s)	346, 505
SsiI	CCGC	1 cut(s)	711
SspMI	CTAG	3 cut(s)	18, 195, 239
StyD4I	CCNGG	4 cut(s)	209, 338, 435, 633
StyI	CCWWGG	2 cut(s)	457, 490
TaaI	ACNGT	5 cut(s)	165, 182, 251, 359, 870
TaiI	ACGT	2 cut(s)	8, 531
TaqI	TCGA	4 cut(s)	24, 320, 378, 561
TaqII	GACCGA	1 cut(s)	830
TasI	AATT	2 cut(s)	346, 505
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	3 cut(s)	30, 214, 677
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	4 cut(s)	303, 362, 478, 800
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	3 cut(s)	465, 515, 640
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	608, 733
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	4 cut(s)	303, 362, 478, 800
Van91I	CCANNNNNTGG	1 cut(s)	757
VneI	GTGCAC	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	1 cut(s)	660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	3 cut(s)	18, 195, 239
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.