Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Reverse (-)

90031851 .. 90033270

Gene Structure 1420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGAGAGCTCGTCCAAATAGTCTTGGTGGAGCCGGGGACCGACCCTTTCGTGGCAACGATTTCTTGCAATATGGTGACTGCTCTCGACTTGCGGACGGAAAATACACCGACAGTAACAATTGTGATTAGACGGGACAGAGACACGAGAGGAGAGAGAGCTAATTATGGCCAAGACAATTCCACCCCAATTCCGGATGAATCACTTGTTGACCAATGGTTTGCAGCAAAAAGCGTGGATCACTCTTGCCGGATTACCCGCAAGATTTGGCCTTGTTACTCGATACCTCTTGGGGACGAATATATTGTTGTGGGAGGTTGGCCAAAATTCTTGCGGCATATTAGTGCAGGCCAATCCCACCTCCGACTTATTTTCCAATTCCATTCCACTACAATGACGTTCGTTGTTACCAGGTTTGATTCTTTCGGTTATCTCTCGCGCTCCCCACCCGATCTACTCCACCGCGGTGTTCAACCCTCCATAGCTGGCTTGGATCAGCTTAAAGAAGAGTATGTACACAATATTGGAACACACAAGTGGTACCCGGTTGATGAACGGTTGGTAAGCATTGCAGTCCTTCTATCACGACGTACCCAAAACTGTTCTTCACGGTGTATGAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.58

Weight (kDa)

7.04

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	540
AccII	CGCG	2 cut(s)	439, 465
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	5 cut(s)	94, 259, 334, 463, 465
AclWI	GGATC	2 cut(s)	246, 501
AcoI	YGGCCR	2 cut(s)	169, 320
AcsI	RAATTY	1 cut(s)	326
AfaI	GTAC	3 cut(s)	516, 542, 592
AfiI	CCNNNNNNNGG	2 cut(s)	52, 193
AgsI	TTSAA	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	410
AleI	CACNNNNGTG	2 cut(s)	465, 535
AluBI	AGCT	4 cut(s)	10, 161, 485, 499
AluI	AGCT	4 cut(s)	10, 161, 485, 499
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	2 cut(s)	246, 501
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	4 cut(s)	169, 269, 320, 349
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp718I	GGTACC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	2 cut(s)	36, 545
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	39
BalI	TGGCCA	2 cut(s)	171, 322
BanI	GGYRCC	1 cut(s)	540
BanII	GRGCYC	1 cut(s)	12
BarI	GAAGNNNNNNTAC	2 cut(s)	498, 530
BauI	CACGAG	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	412
BcnI	CCSGG	2 cut(s)	36, 545
BcoDI	GTCTC	1 cut(s)	135
BisI	GCNGC	2 cut(s)	225, 335
BlsI	GCNGC	2 cut(s)	226, 336
Bme1390I	CCNGG	3 cut(s)	36, 412, 545
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	3 cut(s)	33, 40, 542
BmrFI	CCNGG	3 cut(s)	36, 412, 545
BpuMI	CCSGG	2 cut(s)	36, 545
BsaJI	CCNNGG	2 cut(s)	35, 463
BsaWI	WCCGGW	1 cut(s)	193
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 193
Bse3DI	GCAATG	1 cut(s)	567
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	2 cut(s)	35, 463
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	52, 193
BseMI	GCAATG	1 cut(s)	567
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	366
Bsh1236I	CGCG	2 cut(s)	439, 465
BshFI	GGCC	4 cut(s)	171, 271, 322, 351
BshNI	GGYRCC	1 cut(s)	540
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	4 cut(s)	35, 194, 250, 545
BslFI	GGGAC	3 cut(s)	52, 149, 308
BslI	CCNNNNNNNGG	2 cut(s)	52, 193
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	3 cut(s)	52, 149, 308
BsnI	GGCC	4 cut(s)	171, 271, 322, 351
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp13I	TCCGGA	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	514
Bsp143I	GATC	3 cut(s)	238, 451, 493
BspACI	CCGC	5 cut(s)	94, 259, 334, 463, 465
BspANI	GGCC	4 cut(s)	171, 271, 322, 351
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	439, 465
BspLI	GGNNCC	3 cut(s)	33, 40, 542
BspPI	GGATC	2 cut(s)	246, 501
BspT107I	GGYRCC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	567
BsrGI	TGTACA	1 cut(s)	514
BssECI	CCNNGG	2 cut(s)	35, 463
BssMI	GATC	3 cut(s)	238, 451, 493
BssSI	CACGAG	1 cut(s)	145
Bst2BI	CACGAG	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	4 cut(s)	115, 558, 602, 612
Bst6I	CTCTTC	1 cut(s)	501
BstAUI	TGTACA	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	349, 487
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	2 cut(s)	439, 465
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	3 cut(s)	241, 454, 496
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	3 cut(s)	238, 451, 493
BstNI	CCWGG	1 cut(s)	412
BstSCI	CCNGG	3 cut(s)	34, 410, 543
BstUI	CGCG	2 cut(s)	439, 465
BstV1I	GCAGC	1 cut(s)	236
BsuRI	GGCC	4 cut(s)	171, 271, 322, 351
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	349, 487
CfoI	GCGC	1 cut(s)	441
Cfr13I	GGNCC	1 cut(s)	39
Cfr42I	CCGCGG	1 cut(s)	466
CsiI	ACCWGGT	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	515, 541, 591
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviQI	GTAC	3 cut(s)	515, 541, 591
DpnI	GATC	3 cut(s)	240, 453, 495
DpnII	GATC	3 cut(s)	238, 451, 493
EaeI	YGGCCR	2 cut(s)	169, 320
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	12
FaiI	YATR	7 cut(s)	74, 168, 303, 339, 482, 513, 617
FaqI	GGGAC	3 cut(s)	52, 149, 308
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	225, 335
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	225, 335
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	2 cut(s)	225, 335
HaeIII	GGCC	4 cut(s)	171, 271, 322, 351
HapII	CCGG	4 cut(s)	35, 194, 250, 545
HhaI	GCGC	1 cut(s)	441
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	200, 419
HpaII	CCGG	4 cut(s)	35, 194, 250, 545
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	211, 517
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	3 cut(s)	86, 194, 585
Hpy8I	GTNNAC	2 cut(s)	211, 517
Hpy99I	CGWCG	1 cut(s)	591
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	4 cut(s)	115, 558, 602, 612
HpyCH4IV	ACGT	2 cut(s)	398, 589
HpyCH4V	TGCA	4 cut(s)	69, 224, 347, 572
HpySE526I	ACGT	2 cut(s)	398, 589
HspAI	GCGC	1 cut(s)	439
Kpn2I	TCCGGA	1 cut(s)	193
KpnI	GGTACC	1 cut(s)	544
KspI	CCGCGG	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	238, 451, 493
LmnI	GCTCC	2 cut(s)	31, 446
LpnPI	CCDG	8 cut(s)	48, 207, 263, 333, 397, 424, 471, 558
Lsp1109I	GCAGC	1 cut(s)	236
MabI	ACCWGGT	1 cut(s)	410
MaeII	ACGT	2 cut(s)	398, 589
MaeIII	GTNAC	4 cut(s)	76, 115, 275, 406
MalI	GATC	3 cut(s)	240, 453, 495
MboI	GATC	3 cut(s)	238, 451, 493
MboII	GAAGA	2 cut(s)	518, 597
MfeI	CAATTG	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	12
MlsI	TGGCCA	2 cut(s)	171, 322
MluCI	AATT	6 cut(s)	120, 163, 178, 189, 326, 377
MluNI	TGGCCA	2 cut(s)	171, 322
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	5 cut(s)	143, 297, 308, 371, 487
Mox20I	TGGCCA	2 cut(s)	171, 322
MroI	TCCGGA	1 cut(s)	193
MscI	TGGCCA	2 cut(s)	171, 322
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	4 cut(s)	342, 392, 465, 535
Msp20I	TGGCCA	2 cut(s)	171, 322
MspA1I	CMGCKG	1 cut(s)	465
MspI	CCGG	4 cut(s)	35, 194, 250, 545
MspR9I	CCNGG	3 cut(s)	36, 412, 545
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	412
MvnI	CGCG	2 cut(s)	439, 465
NciI	CCSGG	2 cut(s)	36, 545
NdeII	GATC	3 cut(s)	238, 451, 493
NlaIV	GGNNCC	3 cut(s)	33, 40, 542
NmuCI	GTSAC	1 cut(s)	76
OliI	CACNNNNGTG	2 cut(s)	465, 535
PfeI	GAWTC	2 cut(s)	200, 419
PkrI	GCNGC	2 cut(s)	226, 336
Psp124BI	GAGCTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	3 cut(s)	33, 40, 542
PspPI	GGNCC	1 cut(s)	39
RsaI	GTAC	3 cut(s)	516, 542, 592
RsaNI	GTAC	3 cut(s)	515, 541, 591
RseI	CAYNNNNRTG	4 cut(s)	342, 392, 465, 535
SacI	GAGCTC	1 cut(s)	12
SacII	CCGCGG	1 cut(s)	466
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	2 cut(s)	225, 335
Sau3AI	GATC	3 cut(s)	238, 451, 493
Sau96I	GGNCC	1 cut(s)	39
ScrFI	CCNGG	3 cut(s)	36, 412, 545
SduI	GDGCHC	1 cut(s)	12
SexAI	ACCWGGT	1 cut(s)	410
Sfr303I	CCGCGG	1 cut(s)	466
SgrBI	CCGCGG	1 cut(s)	466
SinI	GGWCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	4 cut(s)	342, 392, 465, 535
Sse9I	AATT	6 cut(s)	120, 163, 178, 189, 326, 377
SsiI	CCGC	5 cut(s)	94, 259, 334, 463, 465
SspI	AATATT	1 cut(s)	523
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	3 cut(s)	34, 410, 543
TaaI	ACNGT	4 cut(s)	115, 558, 602, 612
TaiI	ACGT	2 cut(s)	401, 592
TaqI	TCGA	2 cut(s)	87, 281
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	6 cut(s)	120, 163, 178, 189, 326, 377
TatI	WGTACW	1 cut(s)	514
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	2 cut(s)	200, 419
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	213, 567
TspGWI	ACGGA	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	39
XapI	RAATTY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.