Rmu_co8273039.1_g000001

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8273039.1
OG0002876
Physical Location & Seq
Forward (+)
1 .. 645
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8273039.1_g000001.1.cds

Sequence Viewer

Length: 330 bp
gtcatccctcctccatttgtgatagagttcataaatggtgacagatgccggcaaggaaagataaaactagaaggattagaacagtgccagttgcgggttgaaataaatacggatgggaggggagttgaattgggtgaagggtgggcggaatttgtggggaaaaatttggaggacgggtggatgctagtgctgttaaggtatgagggggcaatgactttttcttccaggagatatggccggtcaggagctctgatggtgacagcaccaagggggagacagacaaaggggacaccacgtggagttggggtcatttatccatcatttgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

109

Amino Acids

12.1

Weight (kDa)

9.14

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 94, 146
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 2 cut(s) 149, 163
AcvI CACGTG 1 cut(s) 296
AdeI CACNNNGTG 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 2 cut(s) 101, 128
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 268
AoxI GGCC 1 cut(s) 235
ApoI RAATTY 2 cut(s) 149, 163
AsuHPI GGTGA 3 cut(s) 50, 146, 268
BanII GRGCYC 1 cut(s) 250
BbrPI CACGTG 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 250
BccI CCATC 3 cut(s) 107, 247, 325
BciT130I CCWGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 2 cut(s) 68, 185
Bme1390I CCNGG 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 35, 171
BsaAI YACGTR 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 266
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 2 cut(s) 48, 237
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 118, 186
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 88
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 2 cut(s) 49, 238
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 250
BspACI CCGC 2 cut(s) 94, 146
BspANI GGCC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 216
BsrFI RCCGGY 2 cut(s) 48, 237
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 2 cut(s) 48, 237
BssECI CCNNGG 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 84
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 50
BstF5I GGATG 2 cut(s) 118, 186
BstMAI GTCTC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 2 cut(s) 118, 186
BtsIMutI CAGTG 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 50
Cfr10I RCCGGY 2 cut(s) 48, 237
CviJI RGCY 2 cut(s) 237, 248
CviKI_1 RGCY 2 cut(s) 237, 248
DraIII CACNNNGTG 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 235
EciI GGCGGA 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 248
Eco72I CACGTG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 266
FaiI YATR 4 cut(s) 32, 201, 234, 328
FaqI GGGAC 1 cut(s) 301
FauI CCCGC 1 cut(s) 87
FokI GGATG 2 cut(s) 125, 193
FriOI GRGCYC 1 cut(s) 250
FspBI CTAG 2 cut(s) 68, 185
HaeIII GGCC 1 cut(s) 237
HapII CCGG 2 cut(s) 49, 238
HpaII CCGG 2 cut(s) 49, 238
HphI GGTGA 3 cut(s) 50, 146, 268
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 243
HpyAV CCTTC 2 cut(s) 65, 131
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 295
KroI GCCGGC 1 cut(s) 48
KroNI GCCGGC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 6 cut(s) 62, 101, 211, 228, 238, 251
LweI GCATC 2 cut(s) 35, 171
MaeI CTAG 2 cut(s) 68, 185
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 2 cut(s) 38, 256
MboII GAAGA 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 3 cut(s) 128, 149, 163
MnlI CCTC 5 cut(s) 18, 21, 111, 163, 196
MroNI GCCGGC 1 cut(s) 48
MseI TTAA 1 cut(s) 194
MspI CCGG 2 cut(s) 49, 238
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
NaeI GCCGGC 1 cut(s) 50
NgoMIV GCCGGC 1 cut(s) 48
NmuCI GTSAC 2 cut(s) 38, 256
PdiI GCCGGC 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 224
PmaCI CACGTG 1 cut(s) 296
PmlI CACGTG 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 224
PspCI CACGTG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 250
SetI ASST 3 cut(s) 200, 250, 298
SfaNI GCATC 2 cut(s) 35, 171
Sse9I AATT 3 cut(s) 128, 149, 163
SsiI CCGC 2 cut(s) 94, 146
SspMI CTAG 2 cut(s) 68, 185
SstI GAGCTC 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 1 cut(s) 298
TasI AATT 3 cut(s) 128, 149, 163
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 89
TseFI GTSAC 2 cut(s) 38, 256
Tsp45I GTSAC 2 cut(s) 38, 256
TspDTI ATGAA 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 89
XapI RAATTY 2 cut(s) 149, 163
XspI CTAG 2 cut(s) 68, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.