Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002876

Physical Location & Seq

Genomic Coordinates Forward (+)

48528563 .. 48535688

Gene Structure 7126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG364100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCAACGAGGGGAACTATCAATTAAGTTGCATGGATTGGAGAGGTGCAAGTGGGGAGTTGCATTTCATAGGGAGGGAAATGTAGTTCAGTTTAGAAAAGGGTGGGAGGTATTTGTTGCTGATAATATGGATGACGAGTGGTTGATGGTGATGTTTAGGTACGAGGGTGGTGTGGAATTTTCAGTAACAAGATTTGACCGCCGAGGTGATCTTCAGTTTAAGGCTCCAGAGGGGAAACATCCCAAGGGATTACCACCTGGAATCCCTAGTTTTTATCCGTGTTTCATCATACTGGTTACACCAAATGGAACAAATAGCGCTGATGTGGTGTCCACCACAACGGCCAATTCACTAATAAGGCAAATTGCTGGGATGACAGAAATTGCGCAAAACCGCTCTCTGCAGGCGAGGAACAACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

140

Amino Acids

15.89

Weight (kDa)

8.66

Isoelectric Point (pI)

22.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313861
rosa_laevigata	RLG00000000965
rosa_multiflora	Rmu_co8273039.1_g000001 Rmu_sc0000931.1_g000012 Rmu_sc0002045.1_g000026 Rmu_sc0003179.1_g000029 Rmu_sc0006198.1_g000015
rosa_roxburghii	Rroxscaffold_1G00068970 Rroxscaffold_1G00068980 Rroxscaffold_1G00068990 Rroxscaffold_2G00129080 Rroxscaffold_2G00129090 Rroxscaffold_4G00309350 Rroxscaffold_7G00162680 Rroxscaffold_7G00162690
rosa_samantha	Rh1AG005200 Rh1AG007200 Rh1AG007300 Rh1CG040300 Rh1CG040400 Rh1DG029100 Rh2AG353600 Rh3BG122100 Rh5AG305400 Rh5CG248700 Rh5CG248900 Rh5CG249000 Rh6BG075500 Rh6BG075600 Rh6CG151700 Rh7DG361800 Rh7DG361900 Rh7DG362800 Rh7DG363700 Rh7DG363800 Rh7DG364100
rosa_wichuraiana	Rw1G000280 Rw1G010450 Rw6G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	387
AccBSI	CCGCTC	1 cut(s)	396
AciI	CCGC	2 cut(s)	199, 394
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	161
AfeI	AGCGCT	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	256
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
Aor51HI	AGCGCT	1 cut(s)	319
AoxI	GGCC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	176
AspLEI	GCGC	2 cut(s)	320, 388
AsuHPI	GGTGA	2 cut(s)	160, 218
BaeI	ACNNNNGTAYC	2 cut(s)	151, 184
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	258
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	202, 243
Bse1I	ACTGG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	202, 243
BseGI	GGATG	3 cut(s)	136, 238, 378
BseNI	ACTGG	1 cut(s)	297
BseYI	CCCAGC	1 cut(s)	368
BshFI	GGCC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	2 cut(s)	199, 394
BspANI	GGCC	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	1 cut(s)	405
BsrBI	CCGCTC	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	2 cut(s)	202, 243
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	136, 238, 378
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	320, 388
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	344
BtsCI	GGATG	3 cut(s)	136, 238, 378
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	2 cut(s)	320, 388
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	2 cut(s)	224, 344
CviKI_1	RGCY	2 cut(s)	224, 344
CviQI	GTAC	1 cut(s)	160
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	35
FaiI	YATR	4 cut(s)	33, 69, 128, 290
FatI	CATG	1 cut(s)	31
FokI	GGATG	3 cut(s)	143, 225, 385
FspBI	CTAG	1 cut(s)	267
FspI	TGCGCA	1 cut(s)	387
GlaI	GCGC	2 cut(s)	319, 387
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	344
HhaI	GCGC	2 cut(s)	320, 388
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	2 cut(s)	318, 386
HinP1I	GCGC	2 cut(s)	318, 386
HinfI	GANTC	1 cut(s)	261
HphI	GGTGA	2 cut(s)	160, 218
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	333
HpyCH4V	TGCA	5 cut(s)	4, 31, 48, 62, 403
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	2 cut(s)	318, 386
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	6 cut(s)	240, 243, 270, 278, 354, 389
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	184, 295
MalI	GATC	1 cut(s)	210
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	203
MluCI	AATT	5 cut(s)	21, 176, 346, 363, 381
MnlI	CCTC	7 cut(s)	36, 67, 100, 157, 197, 223, 402
MseI	TTAA	2 cut(s)	24, 219
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	227
NsbI	TGCGCA	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	405
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	24, 219
Sau3AI	GATC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	5 cut(s)	47, 111, 161, 208, 259
SfcI	CTRYAG	1 cut(s)	401
Sse9I	AATT	5 cut(s)	21, 176, 346, 363, 381
SsiI	CCGC	2 cut(s)	199, 394
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	243
TasI	AATT	5 cut(s)	21, 176, 346, 363, 381
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	2 cut(s)	24, 219
Tru9I	TTAA	2 cut(s)	24, 219
TspDTI	ATGAA	2 cut(s)	56, 274
TspGWI	ACGGA	1 cut(s)	267
XapI	RAATTY	1 cut(s)	176
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.