Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002876

Physical Location & Seq

Genomic Coordinates Forward (+)

64915383 .. 64916768

Gene Structure 1386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATCGGTGTCCAAACAATAACCGATAGACCGTACGTTGATAGTGCCGAGGAAGACTACCCCGACACAAATGACAATGATGAGGGAGATGATTCGTCGGATGACGAACAAGATGCCGAGTTGCAACAAAATCCAATCCCAAGTGTTGTGGTCGAGTGGGAGAGAAATATGCGCAACTCCCCACGGGATATGCAAAGAAATATTTCAAGGGTGTCCGTAGTCGTCGGTGTGTTGTCGGGACTGGAGACGGACAATCATGGGATCTTTCATTTCAGAAGTCAAATGACACCTATAGGTTCAGCGGCGGTTTCGTGGAACTCGGGACAGCATATGGCCTTACAGTGGGAAACAAATGCAAGGTGTCTTATCCGGGAGGCTGGGTGTTCTTCATGGAGAGTCCGTGAGCTTGGTGGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.57

Weight (kDa)

4.39

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313861
rosa_laevigata	RLG00000000965
rosa_multiflora	Rmu_co8273039.1_g000001 Rmu_sc0000931.1_g000012 Rmu_sc0002045.1_g000026 Rmu_sc0003179.1_g000029 Rmu_sc0006198.1_g000015
rosa_roxburghii	Rroxscaffold_1G00068970 Rroxscaffold_1G00068980 Rroxscaffold_1G00068990 Rroxscaffold_2G00129080 Rroxscaffold_2G00129090 Rroxscaffold_4G00309350 Rroxscaffold_7G00162680 Rroxscaffold_7G00162690
rosa_samantha	Rh1AG005200 Rh1AG007200 Rh1AG007300 Rh1CG040300 Rh1CG040400 Rh1DG029100 Rh2AG353600 Rh3BG122100 Rh5AG305400 Rh5CG248700 Rh5CG248900 Rh5CG249000 Rh6BG075500 Rh6BG075600 Rh6CG151700 Rh7DG361800 Rh7DG361900 Rh7DG362800 Rh7DG363700 Rh7DG363800 Rh7DG364100
rosa_wichuraiana	Rw1G000280 Rw1G010450 Rw6G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
AciI	CCGC	2 cut(s)	302, 305
AclWI	GGATC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	1 cut(s)	207
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	371
AvaI	CYCGRG	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	48, 182
BsaXI	ACNNNNNCTCC	4 cut(s)	365, 385, 395, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	48, 182
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	246
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	370
BsiWI	CGTACG	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	252, 336
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	2 cut(s)	252, 336
BsnI	GGCC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	3, 261
BspACI	CCGC	2 cut(s)	302, 305
BspANI	GGCC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	48, 182
BssMI	GATC	2 cut(s)	3, 261
Bst4CI	ACNGT	2 cut(s)	33, 342
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	2 cut(s)	6, 264
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	3, 261
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	347
CfoI	GCGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	129, 164
CviAII	CATG	2 cut(s)	257, 390
CviJI	RGCY	3 cut(s)	335, 377, 406
CviKI_1	RGCY	3 cut(s)	335, 377, 406
CviQI	GTAC	1 cut(s)	34
DpnI	GATC	2 cut(s)	5, 263
DpnII	GATC	2 cut(s)	3, 261
Eco88I	CYCGRG	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	2 cut(s)	260, 393
FaiI	YATR	7 cut(s)	170, 191, 258, 293, 330, 332, 391
FaqI	GGGAC	2 cut(s)	252, 336
FatI	CATG	2 cut(s)	256, 389
FauNDI	CATATG	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	303
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	370
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	260, 393
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	92, 396
HpaII	CCGG	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	100, 275
Hpy188III	TCNNGA	2 cut(s)	237, 321
Hpy99I	CGWCG	2 cut(s)	100, 227
HpyCH4III	ACNGT	2 cut(s)	33, 342
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	124, 193, 356
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	260, 393
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	3, 261
LpnPI	CCDG	3 cut(s)	227, 363, 383
LweI	GCATC	1 cut(s)	103
MaeII	ACGT	1 cut(s)	36
MalI	GATC	2 cut(s)	5, 263
MboI	GATC	2 cut(s)	3, 261
MboII	GAAGA	2 cut(s)	65, 378
MflI	RGATCY	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	3 cut(s)	43, 76, 367
MroXI	GAANNNNTTC	1 cut(s)	202
MseI	TTAA	1 cut(s)	418
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	371
NciI	CCSGG	1 cut(s)	371
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	2 cut(s)	3, 261
NlaIII	CATG	2 cut(s)	260, 393
NmeAIII	GCCGAG	2 cut(s)	73, 142
NsbI	TGCGCA	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	92
Pfl23II	CGTACG	1 cut(s)	33
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	377
PspLI	CGTACG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	261
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	418
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	3, 261
SchI	GAGTC	1 cut(s)	405
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	5 cut(s)	39, 292, 298, 362, 408
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	291
SsiI	CCGC	2 cut(s)	302, 305
SspI	AATATT	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	33, 342
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	153
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	418
Tru9I	TTAA	1 cut(s)	418
TscAI	CASTG	1 cut(s)	347
TspDTI	ATGAA	2 cut(s)	257, 378
TspGWI	ACGGA	3 cut(s)	205, 263, 389
TspRI	CASTG	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.