Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002876

Physical Location & Seq

Genomic Coordinates Forward (+)

1026878 .. 1027862

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG007300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTGCGTGGAGGCAGGAAGGTTATATGTGGAGGATGGAATCAGTTTGTGAAAGACAATTTTGGGGATTACTCGAAATGGTGTATTCTGACTTTGGAATCTCCTTGTAACTTCCGTGCAAGGATATTCAGCAACTATGGGGGGCTAGCATCCCTTGCAAACATGACGGTGCTTGCAAATCAGTTGGATGAGTTGTTTGTGGATAATCTACTGTCGATTCAATCTGCATATGAGGATGTCAGTAGTGATGGAACTATGTCAACTGACATGGAGGATGTCAATAGTGACGGAACTATGTCAATCGACATGGAGGATGTTAGTTCAGTGGATGAGGGTCAAGAGTCAGCTGGGGAGGATCCTAGTTCTGTTGACGTGTACTCACCTAACGAAGAAAGTTCGGATGAAGATGGGGAGCTGCCTTCTTGTGAAATGAGAATCAGAAAATATAATTATGGGCAACTGCCGACGAAGTTTGTGACCGCTCACTTTAAAGAGAAAAAACCATTTTGGTGTGACATTAGGGTACCTGATGGCAGATCATGGCGGGTTCATTTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.92

Weight (kDa)

4.4

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313861
rosa_laevigata	RLG00000000965
rosa_multiflora	Rmu_co8273039.1_g000001 Rmu_sc0000931.1_g000012 Rmu_sc0002045.1_g000026 Rmu_sc0003179.1_g000029 Rmu_sc0006198.1_g000015
rosa_roxburghii	Rroxscaffold_1G00068970 Rroxscaffold_1G00068980 Rroxscaffold_1G00068990 Rroxscaffold_2G00129080 Rroxscaffold_2G00129090 Rroxscaffold_4G00309350 Rroxscaffold_7G00162680 Rroxscaffold_7G00162690
rosa_samantha	Rh1AG005200 Rh1AG007200 Rh1AG007300 Rh1CG040300 Rh1CG040400 Rh1DG029100 Rh2AG353600 Rh3BG122100 Rh5AG305400 Rh5CG248700 Rh5CG248900 Rh5CG249000 Rh6BG075500 Rh6BG075600 Rh6CG151700 Rh7DG361800 Rh7DG361900 Rh7DG362800 Rh7DG363700 Rh7DG363800 Rh7DG364100
rosa_wichuraiana	Rw1G000280 Rw1G010450 Rw6G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	523
AccB1I	GGYRCC	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	482
AciI	CCGC	2 cut(s)	480, 544
AclWI	GGATC	2 cut(s)	350, 363
AfaI	GTAC	2 cut(s)	377, 525
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	1 cut(s)	221
AjiI	CACGTC	1 cut(s)	373
AluBI	AGCT	2 cut(s)	347, 415
AluI	AGCT	2 cut(s)	347, 415
AlwI	GGATC	2 cut(s)	350, 363
ApeKI	GCWGC	1 cut(s)	415
Asp718I	GGTACC	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	372
AsuNHI	GCTAGC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	523
BbvI	GCAGC	1 cut(s)	402
BccI	CCATC	4 cut(s)	30, 242, 401, 524
BfaI	CTAG	2 cut(s)	146, 360
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
BmgBI	CACGTC	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	357, 525
BmsI	GCATC	1 cut(s)	158
BmtI	GCTAGC	1 cut(s)	149
BseGI	GGATG	8 cut(s)	41, 149, 193, 241, 280, 319, 334, 406
BseXI	GCAGC	1 cut(s)	402
BseYI	CCCAGC	1 cut(s)	347
BshNI	GGYRCC	1 cut(s)	523
Bsp143I	GATC	2 cut(s)	355, 536
BspACI	CCGC	2 cut(s)	480, 544
BspLI	GGNNCC	2 cut(s)	357, 525
BspOI	GCTAGC	1 cut(s)	149
BspPI	GGATC	2 cut(s)	350, 363
BspT107I	GGYRCC	1 cut(s)	523
BsrBI	CCGCTC	1 cut(s)	482
BssMI	GATC	2 cut(s)	355, 536
Bst4CI	ACNGT	2 cut(s)	169, 213
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	147, 174
BstF5I	GGATG	8 cut(s)	41, 149, 193, 241, 280, 319, 334, 406
BstKTI	GATC	2 cut(s)	358, 539
BstMBI	GATC	2 cut(s)	355, 536
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	8 cut(s)	41, 149, 193, 241, 280, 319, 334, 406
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	147, 174
Csp6I	GTAC	2 cut(s)	376, 524
CviAII	CATG	4 cut(s)	163, 268, 307, 540
CviJI	RGCY	3 cut(s)	145, 347, 415
CviKI_1	RGCY	3 cut(s)	145, 347, 415
CviQI	GTAC	2 cut(s)	376, 524
DpnI	GATC	2 cut(s)	357, 538
DpnII	GATC	2 cut(s)	355, 536
DraI	TTTAAA	1 cut(s)	490
FaeI	CATG	4 cut(s)	166, 271, 310, 543
FatI	CATG	4 cut(s)	162, 267, 306, 539
FauI	CCCGC	1 cut(s)	537
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	8 cut(s)	48, 136, 200, 248, 287, 326, 341, 413
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	2 cut(s)	146, 360
GluI	GCNGC	1 cut(s)	416
GsaI	CCCAGC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	166, 271, 310, 543
HincII	GTYRAC	2 cut(s)	261, 370
HindII	GTYRAC	2 cut(s)	261, 370
HinfI	GANTC	5 cut(s)	40, 98, 217, 341, 435
HphI	GGTGA	1 cut(s)	372
Hpy166II	GTNNAC	3 cut(s)	261, 370, 376
Hpy188I	TCNGA	4 cut(s)	90, 400, 440, 560
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	3 cut(s)	261, 370, 376
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	2 cut(s)	13, 429
HpyCH4III	ACNGT	2 cut(s)	169, 213
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	4 cut(s)	119, 158, 176, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	166, 271, 310, 543
KpnI	GGTACC	1 cut(s)	527
Kzo9I	GATC	2 cut(s)	355, 536
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	2 cut(s)	333, 540
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	1 cut(s)	158
MaeI	CTAG	2 cut(s)	146, 360
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	4 cut(s)	107, 284, 475, 512
MalI	GATC	2 cut(s)	357, 538
MbiI	CCGCTC	1 cut(s)	482
MboI	GATC	2 cut(s)	355, 536
MboII	GAAGA	2 cut(s)	401, 416
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	2 cut(s)	58, 448
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	7 cut(s)	5, 26, 226, 265, 304, 325, 346
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	2 cut(s)	167, 508
MspA1I	CMGCKG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	2 cut(s)	355, 536
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	166, 271, 310, 543
NlaIV	GGNNCC	2 cut(s)	357, 525
NmuCI	GTSAC	3 cut(s)	284, 475, 512
PfeI	GAWTC	4 cut(s)	40, 98, 217, 435
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	357, 525
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	377, 525
RsaNI	GTAC	2 cut(s)	376, 524
RseI	CAYNNNNRTG	2 cut(s)	167, 508
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	2 cut(s)	355, 536
SchI	GAGTC	1 cut(s)	350
SetI	ASST	6 cut(s)	24, 349, 375, 385, 417, 529
SfaNI	GCATC	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	167, 508
Sse9I	AATT	2 cut(s)	58, 448
SsiI	CCGC	2 cut(s)	480, 544
SspMI	CTAG	2 cut(s)	146, 360
TaaI	ACNGT	2 cut(s)	169, 213
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	3 cut(s)	74, 215, 303
TasI	AATT	2 cut(s)	58, 448
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	4 cut(s)	40, 98, 217, 435
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	3 cut(s)	284, 475, 512
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	3 cut(s)	284, 475, 512
TspDTI	ATGAA	3 cut(s)	417, 539, 544
TspGWI	ACGGA	2 cut(s)	104, 303
TspRI	CASTG	1 cut(s)	330
XspI	CTAG	2 cut(s)	146, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.