Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002876

Physical Location & Seq

Genomic Coordinates Forward (+)

19795715 .. 19797122

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG151700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCATCAGGGAGTGGATCAGTCCCTCAACTTCGAATGGGAAGGGAGCCGTGTTTCATCCAAGTTGTGAGGAACCCGTCAAAGAACACAAAGAGTTTGGTCATCTCTCCTCCATTTGTAGAAGAATTCATGAATGGCGACAAATGCCGCAAGGGAAAAATTAAACCGGAGGGATACCCCATCGATAGTTGGATGATTGAAATAAATACGGATAGTACTGGAGTGGAATTAGGCGATGGGGGGGCGCAATTTGTTGCCGACAATATGACCGAAGGGTGGATGCTAGTGATGTTTAGGTACGAGGGGGCAATAACATTTTCTGCAAGGAGGTATGGACGTTCCGGAGTGCTGATGGTGGGCACACCAATGGGGACACAGAAGATGAAAACAACTGCTAGAGTTGGGGGCGTTTTTCCTTCATTTGCACAGTTGGTGATTCCCGATGGAGTGAACAGCGAGGAATTGATAACCCATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

159

Amino Acids

17.36

Weight (kDa)

7.76

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313861
rosa_laevigata	RLG00000000965
rosa_multiflora	Rmu_co8273039.1_g000001 Rmu_sc0000931.1_g000012 Rmu_sc0002045.1_g000026 Rmu_sc0003179.1_g000029 Rmu_sc0006198.1_g000015
rosa_roxburghii	Rroxscaffold_1G00068970 Rroxscaffold_1G00068980 Rroxscaffold_1G00068990 Rroxscaffold_2G00129080 Rroxscaffold_2G00129090 Rroxscaffold_4G00309350 Rroxscaffold_7G00162680 Rroxscaffold_7G00162690
rosa_samantha	Rh1AG005200 Rh1AG007200 Rh1AG007300 Rh1CG040300 Rh1CG040400 Rh1DG029100 Rh2AG353600 Rh3BG122100 Rh5AG305400 Rh5CG248700 Rh5CG248900 Rh5CG249000 Rh6BG075500 Rh6BG075600 Rh6CG151700 Rh7DG361800 Rh7DG361900 Rh7DG362800 Rh7DG363700 Rh7DG363800 Rh7DG364100
rosa_wichuraiana	Rw1G000280 Rw1G010450 Rw6G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	341
AciI	CCGC	1 cut(s)	148
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	2 cut(s)	217, 299
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	200
AlwI	GGATC	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	445
AsuII	TTCGAA	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	362
BccI	CCATC	4 cut(s)	188, 230, 346, 437
BceAI	ACGGC	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	167
BfaI	CTAG	2 cut(s)	284, 396
BfuI	GTATCC	1 cut(s)	167
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
BmcAI	AGTACT	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	48, 74
BmsI	GCATC	2 cut(s)	14, 270
BpmI	CTGGAG	1 cut(s)	240
Bpu14I	TTCGAA	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	183
BsaWI	WCCGGW	2 cut(s)	166, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	223
BseAI	TCCGGA	1 cut(s)	341
BseCI	ATCGAT	1 cut(s)	183
BseGI	GGATG	3 cut(s)	57, 198, 285
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	362
BshVI	ATCGAT	1 cut(s)	183
BsiSI	CCGG	2 cut(s)	167, 342
BslFI	GGGAC	2 cut(s)	8, 385
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmFI	GGGAC	2 cut(s)	8, 385
Bsp119I	TTCGAA	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp13I	TCCGGA	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	183
BspEI	TCCGGA	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	48, 74
BspPI	GGATC	1 cut(s)	25
BspT104I	TTCGAA	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	429
BstBI	TTCGAA	1 cut(s)	34
BstF5I	GGATG	3 cut(s)	57, 198, 285
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	362
Bsu15I	ATCGAT	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	3 cut(s)	57, 198, 285
CciI	TCATGA	1 cut(s)	129
CfoI	GCGC	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	216, 298
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	1 cut(s)	49
CviKI_1	RGCY	1 cut(s)	49
CviQI	GTAC	2 cut(s)	216, 298
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	125
FaeI	CATG	1 cut(s)	133
FaiI	YATR	4 cut(s)	131, 266, 333, 474
FaqI	GGGAC	2 cut(s)	8, 385
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	3 cut(s)	44, 205, 292
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	2 cut(s)	284, 396
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	240
HapII	CCGG	2 cut(s)	167, 342
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	2 cut(s)	167, 342
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188III	TCNNGA	3 cut(s)	130, 342, 440
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	36, 266, 426
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	323, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	245
Kpn2I	TCCGGA	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	3 cut(s)	180, 204, 355
LweI	GCATC	2 cut(s)	14, 270
MaeI	CTAG	2 cut(s)	284, 396
MaeII	ACGT	1 cut(s)	337
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	134, 391
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	5 cut(s)	125, 159, 227, 248, 461
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	7 cut(s)	36, 63, 120, 163, 295, 321, 451
MroI	TCCGGA	1 cut(s)	341
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	2 cut(s)	167, 342
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	48, 74
NspV	TTCGAA	1 cut(s)	34
PagI	TCATGA	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	48, 74
RsaI	GTAC	2 cut(s)	217, 299
RsaNI	GTAC	2 cut(s)	216, 298
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	17
ScaI	AGTACT	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	3 cut(s)	299, 332, 340
SfaNI	GCATC	2 cut(s)	14, 270
SfuI	TTCGAA	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	5 cut(s)	125, 159, 227, 248, 461
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	2 cut(s)	284, 396
TaaI	ACNGT	1 cut(s)	429
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	2 cut(s)	34, 183
TaqII	GACCGA	1 cut(s)	284
TasI	AATT	5 cut(s)	125, 159, 227, 248, 461
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TspDTI	ATGAA	5 cut(s)	46, 118, 146, 398, 408
TspGWI	ACGGA	1 cut(s)	224
XapI	RAATTY	1 cut(s)	125
XspI	CTAG	2 cut(s)	284, 396
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.