Rh5CG248700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002876
Physical Location & Seq
Reverse (-)
26142410 .. 26143295
886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG248700.1

Sequence Viewer

Length: 513 bp
ATGCAGAAAGGGTGGATGCTATTGATGTTTCGGTACGAAGGGAGTATGGAGTTTCGTGTGAGGAGATATGAACGCAGTGGTGACCTCATGAGAGGGCCTCCTAGACGGACTCTTGAGAGTGGAACACCGCTGAGGATCGCTAAGGTTGGTCCGACATTTGTACGGGAGGATTACAAGTTACCATTCAAGTGGTGCATACTAAATCTGAATAATGTTGAGTTCCATGTGACGGCGTTTAGCCAATCCGGAGGGCTGATTACTGATGATGAGTATGAGCCGGCAATGGACAATCTTGATCCAATGTACATGGACAATCCCTTCGGATATTATATGTATGGAGAGGAAAACAAGGAGTCGGAGAGTGTTGACCCTGTTCCGAGTGAAGAGGAGGACGAGACAGATGAGCAGTTGGGAGATGCGATAGAAGGGGGAAGGAGTCATAAGGGAAGTACATTGTGGTGGAATGTGGAAGGTATGGTTAATGGGAGGTTGTGTTTGGTTGTTTTAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.64

Weight (kDa)

4.62

Isoelectric Point (pI)

62.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 245
AciI CCGC 1 cut(s) 128
AclWI GGATC 2 cut(s) 143, 290
AfaI GTAC 4 cut(s) 35, 162, 305, 451
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 143, 290
Aor13HI TCCGGA 1 cut(s) 245
AoxI GGCC 1 cut(s) 95
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspS9I GGNCC 2 cut(s) 95, 149
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 1 cut(s) 102
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 95, 149
BmsI GCATC 2 cut(s) 6, 406
BplI GAGNNNNNCTC 2 cut(s) 82, 114
Bpu10I CCTNAGC 2 cut(s) 131, 141
BpuEI CTTGAG 1 cut(s) 134
BsaWI WCCGGW 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 1 cut(s) 277
Bse3DI GCAATG 1 cut(s) 288
BseAI TCCGGA 1 cut(s) 245
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 2 cut(s) 76, 401
BshFI GGCC 1 cut(s) 97
BsiSI CCGG 2 cut(s) 246, 278
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 389
BsnI GGCC 1 cut(s) 97
Bsp13I TCCGGA 1 cut(s) 245
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 2 cut(s) 135, 295
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 123
BspEI TCCGGA 1 cut(s) 245
BspHI TCATGA 1 cut(s) 87
BspPI GGATC 2 cut(s) 143, 290
BsrDI GCAATG 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 277
BsrGI TGTACA 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 277
BssMI GATC 2 cut(s) 135, 295
Bst6I CTCTTC 1 cut(s) 378
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 131, 141
BstEII GGTNACC 1 cut(s) 80
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 2 cut(s) 138, 298
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 2 cut(s) 135, 295
BstPI GGTNACC 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 189
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 279
CciI TCATGA 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 95, 149
Csp6I GTAC 4 cut(s) 34, 161, 304, 450
CviAII CATG 3 cut(s) 88, 224, 307
CviJI RGCY 4 cut(s) 97, 240, 253, 277
CviKI_1 RGCY 4 cut(s) 97, 240, 253, 277
CviQI GTAC 4 cut(s) 34, 161, 304, 450
DdeI CTNAG 2 cut(s) 131, 141
DpnI GATC 2 cut(s) 137, 297
DpnII GATC 2 cut(s) 135, 295
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 149
Eco91I GGTNACC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 80
FaeI CATG 3 cut(s) 91, 227, 310
FatI CATG 3 cut(s) 87, 223, 306
FokI GGATG 1 cut(s) 28
FspBI CTAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 97
HapII CCGG 2 cut(s) 246, 278
Hin1II CATG 3 cut(s) 91, 227, 310
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 3 cut(s) 109, 353, 436
HpaII CCGG 2 cut(s) 246, 278
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 5 cut(s) 153, 207, 323, 358, 378
Hpy188III TCNNGA 4 cut(s) 88, 113, 246, 293
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 5 cut(s) 32, 328, 419, 426, 464
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 2 cut(s) 4, 195
HpyF3I CTNAG 2 cut(s) 131, 141
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 3 cut(s) 91, 227, 310
Kpn2I TCCGGA 1 cut(s) 245
KroI GCCGGC 1 cut(s) 277
KroNI GCCGGC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 135, 295
LpnPI CCDG 3 cut(s) 259, 291, 384
LweI GCATC 2 cut(s) 6, 406
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 509
MaeIII GTNAC 3 cut(s) 80, 177, 226
MalI GATC 2 cut(s) 137, 297
MboI GATC 2 cut(s) 135, 295
MboII GAAGA 1 cut(s) 395
MlyI GAGTC 3 cut(s) 103, 362, 445
MmeI TCCRAC 2 cut(s) 176, 336
MroI TCCGGA 1 cut(s) 245
MroNI GCCGGC 1 cut(s) 277
MseI TTAA 2 cut(s) 480, 506
MslI CAYNNNNRTG 2 cut(s) 187, 457
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 2 cut(s) 246, 278
NaeI GCCGGC 1 cut(s) 279
NdeII GATC 2 cut(s) 135, 295
NgoMIV GCCGGC 1 cut(s) 277
NlaIII CATG 3 cut(s) 91, 227, 310
NmuCI GTSAC 2 cut(s) 80, 226
PagI TCATGA 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 279
PleI GAGTC 3 cut(s) 103, 361, 444
PpsI GAGTC 3 cut(s) 103, 361, 444
PspEI GGTNACC 1 cut(s) 80
PspPI GGNCC 2 cut(s) 95, 149
RsaI GTAC 4 cut(s) 35, 162, 305, 451
RsaNI GTAC 4 cut(s) 34, 161, 304, 450
RseI CAYNNNNRTG 2 cut(s) 187, 457
SaqAI TTAA 2 cut(s) 480, 506
Sau3AI GATC 2 cut(s) 135, 295
Sau96I GGNCC 2 cut(s) 95, 149
SchI GAGTC 3 cut(s) 103, 362, 445
SetI ASST 5 cut(s) 87, 147, 475, 491, 512
SfaNI GCATC 2 cut(s) 6, 406
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 2 cut(s) 187, 457
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
SsiI CCGC 1 cut(s) 128
SspMI CTAG 1 cut(s) 102
TaiI ACGT 1 cut(s) 512
TatI WGTACW 2 cut(s) 303, 449
Tru1I TTAA 2 cut(s) 480, 506
Tru9I TTAA 2 cut(s) 480, 506
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 2 cut(s) 80, 226
Tsp45I GTSAC 2 cut(s) 80, 226
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 149
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.