Rroxscaffold_1G00068990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002876
Physical Location & Seq
Forward (+)
90038716 .. 90041292
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00068990.1

Sequence Viewer

Length: 354 bp
ATGCAAGGTGTCTTATCCGGGAGGCTGGGTGTTCTTCATGGAGAGTCTGTGAGCTTGGTGGCAGTTAAGATGAGATTGGGGAATGGCGATGCTGAAGGAGACATGCATGATCATATATCTTACACGTTCATCATCCATGGAGGAATCCCTTCGAAACACATTGAAGCATGGACGCTGTACAATACCAAGACCCCCACACCCTACCTTGAAGAACACGGTGCTGTTCACCGGCCCGAGGACAACCGCTCCAAAATATTGACGGTCGAAGAGGTCATTGTAAATATCGATACACTGCTCTGCTGTTCACCGGACCGGATACAACCCCTTGTTCACTCCATTGCCGGCGGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.79

Weight (kDa)

6.02

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 246
AciI CCGC 2 cut(s) 244, 345
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 235
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 164, 209
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 93
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 148
AspS9I GGNCC 2 cut(s) 231, 310
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 218, 297
AsuII TTCGAA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 310
BciVI GTATCC 1 cut(s) 309
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 93
BfuI GTATCC 1 cut(s) 309
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 231, 310
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 79
Bpu14I TTCGAA 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 136, 234
BsaWI WCCGGW 2 cut(s) 307, 312
BsaXI ACNNNNNCTCC 6 cut(s) 13, 33, 43, 63, 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 2 cut(s) 228, 341
Bse3DI GCAATG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 136, 234
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 336
BseYI CCCAGC 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 285
BsiEI CGRYCG 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 5 cut(s) 18, 229, 308, 313, 342
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 93
BsnI GGCC 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 152
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 1 cut(s) 109
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 2 cut(s) 244, 345
BspANI GGCC 1 cut(s) 232
BspDI ATCGAT 1 cut(s) 285
BspT104I TTCGAA 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 336
BsrFI RCCGGY 2 cut(s) 228, 341
BsrGI TGTACA 1 cut(s) 177
BssAI RCCGGY 2 cut(s) 228, 341
BssECI CCNNGG 2 cut(s) 136, 234
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 218, 262
Bst6I CTCTTC 1 cut(s) 261
BstAUI TGTACA 1 cut(s) 177
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 343
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 109
BstMCI CGRYCG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 285
BsuI GTATCC 1 cut(s) 309
BsuRI GGCC 1 cut(s) 232
BsuTUI ATCGAT 1 cut(s) 285
BtgI CCRYGG 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 132
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 343
Cfr10I RCCGGY 2 cut(s) 228, 341
Cfr13I GGNCC 2 cut(s) 231, 310
ClaI ATCGAT 1 cut(s) 285
CpoI CGGWCCG 1 cut(s) 310
CseI GACGC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 178
CspI CGGWCCG 1 cut(s) 310
CviAII CATG 5 cut(s) 38, 103, 107, 137, 168
CviJI RGCY 3 cut(s) 25, 54, 232
CviKI_1 RGCY 3 cut(s) 25, 54, 232
CviQI GTAC 1 cut(s) 178
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 5 cut(s) 41, 106, 110, 140, 171
FaiI YATR 7 cut(s) 39, 104, 108, 114, 116, 138, 169
FatI CATG 5 cut(s) 37, 102, 106, 136, 167
FbaI TGATCA 1 cut(s) 109
FokI GGATG 1 cut(s) 119
GsaI CCCAGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 232
HapII CCGG 5 cut(s) 18, 229, 308, 313, 342
HgaI GACGC 1 cut(s) 181
Hin1II CATG 5 cut(s) 41, 106, 110, 140, 171
HinfI GANTC 2 cut(s) 44, 144
HpaII CCGG 5 cut(s) 18, 229, 308, 313, 342
HphI GGTGA 2 cut(s) 218, 297
Hpy166II GTNNAC 3 cut(s) 226, 305, 331
Hpy8I GTNNAC 3 cut(s) 226, 305, 331
HpyAV CCTTC 2 cut(s) 89, 159
HpyCH4III ACNGT 2 cut(s) 218, 262
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 4, 106
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 5 cut(s) 41, 106, 110, 140, 171
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 5 cut(s) 11, 31, 242, 321, 326
LweI GCATC 1 cut(s) 79
MaeII ACGT 1 cut(s) 125
MalI GATC 1 cut(s) 111
MbiI CCGCTC 1 cut(s) 246
MboI GATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 26, 221, 278
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 4 cut(s) 15, 134, 229, 262
Mph1103I ATGCAT 1 cut(s) 108
MroNI GCCGGC 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 148
MseI TTAA 1 cut(s) 66
MspI CCGG 5 cut(s) 18, 229, 308, 313, 342
MspR9I CCNGG 1 cut(s) 19
NaeI GCCGGC 1 cut(s) 343
NciI CCSGG 1 cut(s) 19
NcoI CCATGG 1 cut(s) 136
NdeII GATC 1 cut(s) 109
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 5 cut(s) 41, 106, 110, 140, 171
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 1 cut(s) 106
NspV TTCGAA 1 cut(s) 152
PdiI GCCGGC 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 17
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PspFI CCCAGC 1 cut(s) 25
PspPI GGNCC 2 cut(s) 231, 310
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
Rsr2I CGGWCCG 1 cut(s) 310
RsrII CGGWCCG 1 cut(s) 310
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 2 cut(s) 231, 310
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 19
SetI ASST 5 cut(s) 10, 56, 128, 207, 273
SfaNI GCATC 1 cut(s) 79
SfuI TTCGAA 1 cut(s) 152
SinI GGWCC 1 cut(s) 310
SsiI CCGC 2 cut(s) 244, 345
SspI AATATT 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 218, 262
TaiI ACGT 1 cut(s) 128
TaqI TCGA 3 cut(s) 152, 264, 285
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 297
TspDTI ATGAA 2 cut(s) 26, 118
TspRI CASTG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 310
XceI RCATGY 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 148
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.