Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002876

Physical Location & Seq

Genomic Coordinates Reverse (-)

48486279 .. 48487026

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG363700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAGAGGGCCTCCTAGACGGACTTTTGACAGTGGAACACCGATGAGGTTTGTTAAGGTTGGTCTGACATTTGCACGATATGTAGTGCAGGGTTCCCGCAACGGAACTGATTTGCCTGTGCCAGAGGACGTTATATCAGCCATCTCTGCTCGGCATCATCACCTAATTTCACTGTGGCTGAAGGGAAAAATAGACCTATGGGGTGGCTCAATTGTGGTAGCTGCTAATGGAGCTTACGTAATGGGTTGGGAACACTTTGTTAATATGTACTTTAGCAGGGAGGATTACAAGTTACCATCCAAGTGGTGCATACTAGATCTGAAGAATGTTGAGTCCCATGTGACGGCATTTAGCCAATCCGGAGGGCTGATTACTGATTATGAGTATGAGCCGGCAAGGAATAATCTTGATCCAATGTACGTGGACAATCCCTTCGGATATTATATGTATGGAGGGGAAAATAGGAAGTCGGACAGTGTTGACCCTATTCCGAGTGAAAATGAGGACGAGACAGTTGAGCAGTTGGCAGATGCAAAAAATGGGGGAAGGAGTAATAAGGGAAGTACATTGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.49

Weight (kDa)

5.72

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313861
rosa_laevigata	RLG00000000965
rosa_multiflora	Rmu_co8273039.1_g000001 Rmu_sc0000931.1_g000012 Rmu_sc0002045.1_g000026 Rmu_sc0003179.1_g000029 Rmu_sc0006198.1_g000015
rosa_roxburghii	Rroxscaffold_1G00068970 Rroxscaffold_1G00068980 Rroxscaffold_1G00068990 Rroxscaffold_2G00129080 Rroxscaffold_2G00129090 Rroxscaffold_4G00309350 Rroxscaffold_7G00162680 Rroxscaffold_7G00162690
rosa_samantha	Rh1AG005200 Rh1AG007200 Rh1AG007300 Rh1CG040300 Rh1CG040400 Rh1DG029100 Rh2AG353600 Rh3BG122100 Rh5AG305400 Rh5CG248700 Rh5CG248900 Rh5CG249000 Rh6BG075500 Rh6BG075600 Rh6CG151700 Rh7DG361800 Rh7DG361900 Rh7DG362800 Rh7DG363700 Rh7DG363800 Rh7DG364100
rosa_wichuraiana	Rw1G000280 Rw1G010450 Rw6G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	359
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	404
AcuI	CTGAAG	2 cut(s)	200, 341
AfaI	GTAC	3 cut(s)	269, 419, 565
AfiI	CCNNNNNNNGG	1 cut(s)	343
AluBI	AGCT	2 cut(s)	221, 233
AluI	AGCT	2 cut(s)	221, 233
Alw26I	GTCTC	1 cut(s)	503
AlwI	GGATC	1 cut(s)	404
Aor13HI	TCCGGA	1 cut(s)	359
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	2 cut(s)	149, 304
BceAI	ACGGC	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	503
BfaI	CTAG	2 cut(s)	15, 314
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	2 cut(s)	163, 520
BplI	GAGNNNNNCTC	1 cut(s)	27
BsaAI	YACGTR	2 cut(s)	238, 421
BsaWI	WCCGGW	1 cut(s)	359
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	391
BseAI	TCCGGA	1 cut(s)	359
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	208
BsgI	GTGCAG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	360, 392
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	10
Bsp13I	TCCGGA	1 cut(s)	359
Bsp143I	GATC	2 cut(s)	316, 409
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	10
BspEI	TCCGGA	1 cut(s)	359
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	391
BssMI	GATC	2 cut(s)	316, 409
Bst4CI	ACNGT	4 cut(s)	32, 174, 476, 514
BstBAI	YACGTR	2 cut(s)	238, 421
BstC8I	GCNNGC	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	2 cut(s)	319, 412
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	2 cut(s)	316, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 230
BstSNI	TACGTA	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	3 cut(s)	37, 170, 481
Cac8I	GCNNGC	1 cut(s)	393
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	8
Csp6I	GTAC	3 cut(s)	268, 418, 564
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	9 cut(s)	10, 140, 178, 207, 221, 233, 354, 367, 391
CviKI_1	RGCY	9 cut(s)	10, 140, 178, 207, 221, 233, 354, 367, 391
CviQI	GTAC	3 cut(s)	268, 418, 564
DpnI	GATC	2 cut(s)	318, 411
DpnII	GATC	2 cut(s)	316, 409
Eco105I	TACGTA	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	200, 341
EcoO109I	RGGNCCY	1 cut(s)	8
FaeI	CATG	1 cut(s)	341
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	1 cut(s)	337
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	15, 314
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	2 cut(s)	360, 392
Hin1II	CATG	1 cut(s)	341
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	2 cut(s)	360, 392
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	424, 481
Hpy188I	TCNGA	5 cut(s)	66, 321, 437, 472, 492
Hpy188III	TCNNGA	2 cut(s)	360, 407
Hpy8I	GTNNAC	2 cut(s)	424, 481
HpyAV	CCTTC	3 cut(s)	175, 442, 540
HpyCH4III	ACNGT	4 cut(s)	32, 174, 476, 514
HpyCH4IV	ACGT	3 cut(s)	129, 237, 420
HpyCH4V	TGCA	4 cut(s)	74, 88, 309, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 230
HpySE526I	ACGT	3 cut(s)	129, 237, 420
Hsp92II	CATG	1 cut(s)	341
Kpn2I	TCCGGA	1 cut(s)	359
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	316, 409
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	6 cut(s)	74, 129, 135, 262, 373, 405
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	2 cut(s)	163, 520
MaeI	CTAG	2 cut(s)	15, 314
MaeII	ACGT	3 cut(s)	129, 237, 420
MaeIII	GTNAC	2 cut(s)	291, 340
MalI	GATC	2 cut(s)	318, 411
MboI	GATC	2 cut(s)	316, 409
MboII	GAAGA	1 cut(s)	334
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	316
MluCI	AATT	2 cut(s)	165, 210
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	7 cut(s)	21, 39, 118, 274, 356, 446, 496
MroI	TCCGGA	1 cut(s)	359
MroNI	GCCGGC	1 cut(s)	391
MseI	TTAA	2 cut(s)	54, 261
MslI	CAYNNNNRTG	1 cut(s)	301
MspI	CCGG	2 cut(s)	360, 392
MunI	CAATTG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	146, 230
NaeI	GCCGGC	1 cut(s)	393
NdeII	GATC	2 cut(s)	316, 409
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	1 cut(s)	94
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	393
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Ppu21I	YACGTR	2 cut(s)	238, 421
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	8
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	3 cut(s)	269, 419, 565
RsaNI	GTAC	3 cut(s)	268, 418, 564
RseI	CAYNNNNRTG	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	54, 261
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	316, 409
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	1 cut(s)	341
SetI	ASST	9 cut(s)	50, 60, 132, 165, 198, 223, 235, 240, 423
SfaNI	GCATC	2 cut(s)	163, 520
SmiMI	CAYNNNNRTG	1 cut(s)	301
SnaBI	TACGTA	1 cut(s)	238
Sse9I	AATT	2 cut(s)	165, 210
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	2 cut(s)	15, 314
TaaI	ACNGT	4 cut(s)	32, 174, 476, 514
TaiI	ACGT	3 cut(s)	132, 240, 423
TasI	AATT	2 cut(s)	165, 210
TatI	WGTACW	2 cut(s)	267, 563
Tru1I	TTAA	2 cut(s)	54, 261
Tru9I	TTAA	2 cut(s)	54, 261
TscAI	CASTG	3 cut(s)	37, 177, 481
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	340
TspGWI	ACGGA	2 cut(s)	34, 117
TspRI	CASTG	3 cut(s)	37, 177, 481
XspI	CTAG	2 cut(s)	15, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.