Rh5CG249000

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002876
Physical Location & Seq
Forward (+)
26181306 .. 26182403
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG249000.1

Sequence Viewer

Length: 285 bp
ATGAGAATCGGAAAATATAATTATGGGCAACTGCTGACGAAGTTTGTGACCGCTCATTTTAAAGAGAAAAAACCATTTTGGTGTGACATTAGGGTACCCGATGGCAGATCATGGCGGGTTCATTTCATCCGATCTAATGAGACAATGAGGTTTACACCGGGATTCACGGATTTCATGAAGGGGTATGGTTTGGTTAACGGTGACCGATGCGTGGTGGCATATCGTGGACAGTGGGTCTTCCTCATATGGAAGACAACAAGGTCCATTATATGCCCACAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

94

Amino Acids

11.23

Weight (kDa)

10.16

Isoelectric Point (pI)

13.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 11 - 76 1.5e-07 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 259
Acc65I GGTACC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 53
AciI CCGC 2 cut(s) 51, 115
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 211
AhdI GACNNNNNGTC 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 134
Asp718I GGTACC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 94
BbsI GAAGAC 2 cut(s) 229, 257
BccI CCATC 1 cut(s) 95
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 261
BmeRI GACNNNNNGTC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 197
BpiI GAAGAC 2 cut(s) 229, 257
BpuMI CCSGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 211
BshNI GGYRCC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 107, 131
BspACI CCGC 2 cut(s) 51, 115
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 94
BsrBI CCGCTC 1 cut(s) 53
BssMI GATC 2 cut(s) 107, 131
Bst4CI ACNGT 2 cut(s) 200, 231
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 2 cut(s) 110, 134
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 107, 131
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 157
BstV2I GAAGAC 2 cut(s) 229, 257
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 236
CciI TCATGA 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 95
CviAII CATG 2 cut(s) 111, 175
CviQI GTAC 1 cut(s) 95
DpnI GATC 2 cut(s) 109, 133
DpnII GATC 2 cut(s) 107, 131
DraI TTTAAA 1 cut(s) 61
DrdI GACNNNNNNGTC 1 cut(s) 259
DriI GACNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 259
Eam1105I GACNNNNNGTC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 200
FaeI CATG 2 cut(s) 114, 178
FatI CATG 2 cut(s) 110, 174
FauI CCCGC 1 cut(s) 108
FauNDI CATATG 1 cut(s) 245
FokI GGATG 1 cut(s) 113
HapII CCGG 1 cut(s) 158
Hin1II CATG 2 cut(s) 114, 178
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 2 cut(s) 6, 162
HpaI GTTAAC 1 cut(s) 196
HpaII CCGG 1 cut(s) 158
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 3 cut(s) 153, 196, 227
Hpy188I TCNGA 2 cut(s) 11, 131
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 3 cut(s) 153, 196, 227
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 200, 231
Hsp92II CATG 2 cut(s) 114, 178
KpnI GGTACC 1 cut(s) 98
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 2 cut(s) 107, 131
LpnPI CCDG 1 cut(s) 171
LweI GCATC 1 cut(s) 197
MaeIII GTNAC 3 cut(s) 46, 83, 200
MalI GATC 2 cut(s) 109, 133
MbiI CCGCTC 1 cut(s) 53
MboI GATC 2 cut(s) 107, 131
MboII GAAGA 2 cut(s) 229, 262
MluCI AATT 1 cut(s) 19
MnlI CCTC 2 cut(s) 141, 251
MseI TTAA 2 cut(s) 60, 195
MslI CAYNNNNRTG 1 cut(s) 79
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 159
NciI CCSGG 1 cut(s) 159
NdeI CATATG 1 cut(s) 245
NdeII GATC 2 cut(s) 107, 131
NlaIII CATG 2 cut(s) 114, 178
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 3 cut(s) 46, 83, 200
PagI TCATGA 1 cut(s) 174
PfeI GAWTC 2 cut(s) 6, 162
PspEI GGTNACC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 261
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 79
SaqAI TTAA 2 cut(s) 60, 195
Sau3AI GATC 2 cut(s) 107, 131
Sau96I GGNCC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 159
SetI ASST 2 cut(s) 152, 263
SfaNI GCATC 1 cut(s) 197
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 79
Sse9I AATT 1 cut(s) 19
SsiI CCGC 2 cut(s) 51, 115
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 200, 231
TaqII GACCGA 1 cut(s) 219
TasI AATT 1 cut(s) 19
TfiI GAWTC 2 cut(s) 6, 162
Tru1I TTAA 2 cut(s) 60, 195
Tru9I TTAA 2 cut(s) 60, 195
TscAI CASTG 1 cut(s) 236
TseFI GTSAC 3 cut(s) 46, 83, 200
Tsp45I GTSAC 3 cut(s) 46, 83, 200
TspDTI ATGAA 4 cut(s) 110, 115, 163, 191
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.