Rh1DG029100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002876
Physical Location & Seq
Forward (+)
4513763 .. 4514336
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG029100.1

Sequence Viewer

Length: 399 bp
ATGATGTTTCGTGTCAGGAGATATGAACGCAGTGGTGACCTCATGAGAGGGCCTCCTAAACGGACTCTTGAGAGTGGAACACCGGTGAGGATAGCTAAGGTTGGTCCGACATTTGCACGGTATGTAGTGCAGGGTTCCCGGAACGGCACTGATTTGGCTGTGCCAGAGGACATTATATCAGCCATTTCTGCTCGACATCATCACCTAATTTCACTACGCCTGAAGGGCAAAGTTGACCTATGGGGTGGGTCAATTGTGGTAGCTGGTAATGGAGGTTACATAATGGGTTGGGAACGCTTTGTTAATATGTACTTTAGCAGGGAGGATTACAAGTTACCATCCAAGTGGTGCATACTAGATTTGAATAATGTCGAGTTCCATGTAACGACGTTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.0

Weight (kDa)

9.92

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 311
AgeI ACCGGT 1 cut(s) 82
AgsI TTSAA 1 cut(s) 364
AluBI AGCT 3 cut(s) 95, 263, 396
AluI AGCT 3 cut(s) 95, 263, 396
AoxI GGCC 1 cut(s) 50
AsiGI ACCGGT 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 50, 104
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 3 cut(s) 47, 97, 194
AvaII GGWCC 1 cut(s) 104
BccI CCATC 1 cut(s) 346
BceAI ACGGC 1 cut(s) 160
BcnI CCSGG 1 cut(s) 139
BfaI CTAG 1 cut(s) 356
BglI GCCNNNNNGGC 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 50, 104
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 139
BplI GAGNNNNNCTC 2 cut(s) 37, 69
Bpu10I CCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 82
BseGI GGATG 1 cut(s) 338
BsgI GTGCAG 1 cut(s) 149
BshFI GGCC 1 cut(s) 52
BshTI ACCGGT 1 cut(s) 82
BsiSI CCGG 2 cut(s) 83, 139
BsnI GGCC 1 cut(s) 52
BspANI GGCC 1 cut(s) 52
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 1 cut(s) 338
BstMWI GCNNNNNNNGC 2 cut(s) 188, 225
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 345
BsuRI GGCC 1 cut(s) 52
BtsCI GGATG 1 cut(s) 338
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 2 cut(s) 37, 147
CciI TCATGA 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 50, 104
Csp6I GTAC 1 cut(s) 310
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 2 cut(s) 43, 380
CviJI RGCY 6 cut(s) 52, 95, 158, 182, 263, 396
CviKI_1 RGCY 6 cut(s) 52, 95, 158, 182, 263, 396
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 242
Eco91I GGTNACC 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 35
FaeI CATG 2 cut(s) 46, 383
FaiI YATR 9 cut(s) 24, 44, 123, 176, 241, 281, 308, 353, 381
FatI CATG 2 cut(s) 42, 379
FokI GGATG 1 cut(s) 325
FspBI CTAG 1 cut(s) 356
HaeIII GGCC 1 cut(s) 52
HapII CCGG 2 cut(s) 83, 139
Hin1II CATG 2 cut(s) 46, 383
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 1 cut(s) 64
HpaII CCGG 2 cut(s) 83, 139
HphI GGTGA 3 cut(s) 47, 97, 194
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 16, 43, 68
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 391
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 3 cut(s) 116, 130, 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 225
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 2 cut(s) 46, 383
LpnPI CCDG 7 cut(s) 96, 116, 152, 177, 233, 249, 304
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 4 cut(s) 35, 275, 333, 382
MfeI CAATTG 1 cut(s) 252
MluCI AATT 2 cut(s) 207, 252
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 7 cut(s) 41, 50, 63, 81, 160, 266, 316
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 343
MspI CCGG 2 cut(s) 83, 139
MspR9I CCNGG 1 cut(s) 139
MunI CAATTG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 188, 225
NciI CCSGG 1 cut(s) 139
NlaIII CATG 2 cut(s) 46, 383
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 35
PagI TCATGA 1 cut(s) 42
PfoI TCCNGGA 1 cut(s) 137
PinAI ACCGGT 1 cut(s) 82
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PspEI GGTNACC 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 2 cut(s) 50, 104
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 343
SaqAI TTAA 1 cut(s) 303
Sau96I GGNCC 2 cut(s) 50, 104
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 139
SetI ASST 9 cut(s) 42, 97, 102, 207, 240, 265, 277, 392, 398
SgrAI CRCCGGYG 1 cut(s) 82
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 207, 252
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 120
TaiI ACGT 1 cut(s) 392
TaqI TCGA 2 cut(s) 193, 372
TasI AATT 2 cut(s) 207, 252
TatI WGTACW 1 cut(s) 309
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 2 cut(s) 37, 154
TseFI GTSAC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 2 cut(s) 37, 154
VpaK11BI GGWCC 1 cut(s) 104
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.