B3 DNA binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0313861 |
| rosa_laevigata | RLG00000000965 |
| rosa_multiflora | Rmu_co8273039.1_g000001 Rmu_sc0000931.1_g000012 Rmu_sc0002045.1_g000026 Rmu_sc0003179.1_g000029 Rmu_sc0006198.1_g000015 |
| rosa_roxburghii | Rroxscaffold_1G00068970 Rroxscaffold_1G00068980 Rroxscaffold_1G00068990 Rroxscaffold_2G00129080 Rroxscaffold_2G00129090 Rroxscaffold_4G00309350 Rroxscaffold_7G00162680 Rroxscaffold_7G00162690 |
| rosa_samantha | Rh1AG005200 Rh1AG007200 Rh1AG007300 Rh1CG040300 Rh1CG040400 Rh1DG029100 Rh2AG353600 Rh3BG122100 Rh5AG305400 Rh5CG248700 Rh5CG248900 Rh5CG249000 Rh6BG075500 Rh6BG075600 Rh6CG151700 Rh7DG361800 Rh7DG361900 Rh7DG362800 Rh7DG363700 Rh7DG363800 Rh7DG364100 |
| rosa_wichuraiana | Rw1G000280 Rw1G010450 Rw6G013480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 334 |
| AciI | CCGC | 2 cut(s) | 19, 116 |
| AcoI | YGGCCR | 1 cut(s) | 113 |
| AcsI | RAATTY | 1 cut(s) | 346 |
| AcuI | CTGAAG | 3 cut(s) | 41, 195, 252 |
| AfaI | GTAC | 2 cut(s) | 88, 170 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 147, 334 |
| AgsI | TTSAA | 1 cut(s) | 71 |
| AjnI | CCWGG | 1 cut(s) | 327 |
| AoxI | GGCC | 2 cut(s) | 113, 205 |
| ApoI | RAATTY | 1 cut(s) | 346 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 382 |
| AspS9I | GGNCC | 1 cut(s) | 206 |
| AsuHPI | GGTGA | 1 cut(s) | 316 |
| BccI | CCATC | 2 cut(s) | 101, 217 |
| BciT130I | CCWGG | 1 cut(s) | 329 |
| BfaI | CTAG | 1 cut(s) | 155 |
| BisI | GCNGC | 2 cut(s) | 19, 116 |
| BlsI | GCNGC | 2 cut(s) | 20, 117 |
| BmcAI | AGTACT | 1 cut(s) | 88 |
| Bme1390I | CCNGG | 1 cut(s) | 329 |
| BmgT120I | GGNCC | 1 cut(s) | 206 |
| BmrFI | CCNGG | 1 cut(s) | 329 |
| BmrI | ACTGGG | 1 cut(s) | 99 |
| BmsI | GCATC | 3 cut(s) | 5, 35, 141 |
| BmuI | ACTGGG | 1 cut(s) | 99 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 147, 334 |
| Bse1I | ACTGG | 2 cut(s) | 42, 94 |
| Bse3DI | GCAATG | 1 cut(s) | 186 |
| BseBI | CCWGG | 1 cut(s) | 329 |
| BseGI | GGATG | 2 cut(s) | 50, 156 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 147, 334 |
| BseMI | GCAATG | 1 cut(s) | 186 |
| BseNI | ACTGG | 2 cut(s) | 42, 94 |
| BshFI | GGCC | 2 cut(s) | 115, 207 |
| BslFI | GGGAC | 2 cut(s) | 244, 256 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 147, 334 |
| BsmFI | GGGAC | 2 cut(s) | 244, 256 |
| BsnI | GGCC | 2 cut(s) | 115, 207 |
| BspACI | CCGC | 2 cut(s) | 19, 116 |
| BspANI | GGCC | 2 cut(s) | 115, 207 |
| BsrDI | GCAATG | 1 cut(s) | 186 |
| BsrI | ACTGG | 2 cut(s) | 42, 94 |
| Bst2UI | CCWGG | 1 cut(s) | 329 |
| Bst4CI | ACNGT | 2 cut(s) | 300, 358 |
| BstF5I | GGATG | 2 cut(s) | 50, 156 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 15 |
| BstNI | CCWGG | 1 cut(s) | 329 |
| BstSCI | CCNGG | 1 cut(s) | 327 |
| BsuRI | GGCC | 2 cut(s) | 115, 207 |
| BtgZI | GCGATG | 1 cut(s) | 120 |
| BtsCI | GGATG | 2 cut(s) | 50, 156 |
| BtsIMutI | CAGTG | 1 cut(s) | 65 |
| Cfr13I | GGNCC | 1 cut(s) | 206 |
| Csp6I | GTAC | 2 cut(s) | 87, 169 |
| CviJI | RGCY | 4 cut(s) | 115, 147, 207, 327 |
| CviKI_1 | RGCY | 4 cut(s) | 115, 147, 207, 327 |
| CviQI | GTAC | 2 cut(s) | 87, 169 |
| EaeI | YGGCCR | 1 cut(s) | 113 |
| Eco57I | CTGAAG | 3 cut(s) | 41, 195, 252 |
| EcoRII | CCWGG | 1 cut(s) | 327 |
| FaiI | YATR | 4 cut(s) | 53, 137, 204, 369 |
| FaqI | GGGAC | 2 cut(s) | 244, 256 |
| Fnu4HI | GCNGC | 2 cut(s) | 19, 116 |
| FokI | GGATG | 2 cut(s) | 57, 163 |
| Fsp4HI | GCNGC | 2 cut(s) | 19, 116 |
| FspBI | CTAG | 1 cut(s) | 155 |
| GluI | GCNGC | 2 cut(s) | 19, 116 |
| HaeIII | GGCC | 2 cut(s) | 115, 207 |
| HinfI | GANTC | 1 cut(s) | 232 |
| HphI | GGTGA | 1 cut(s) | 316 |
| Hpy166II | GTNNAC | 1 cut(s) | 322 |
| Hpy188III | TCNNGA | 1 cut(s) | 213 |
| Hpy8I | GTNNAC | 1 cut(s) | 322 |
| HpyAV | CCTTC | 4 cut(s) | 137, 167, 219, 297 |
| HpyCH4III | ACNGT | 2 cut(s) | 300, 358 |
| HpyCH4V | TGCA | 3 cut(s) | 194, 296, 343 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 15 |
| LpnPI | CCDG | 7 cut(s) | 23, 75, 133, 198, 255, 314, 341 |
| LweI | GCATC | 3 cut(s) | 5, 35, 141 |
| MaeI | CTAG | 1 cut(s) | 155 |
| MboII | GAAGA | 1 cut(s) | 265 |
| MfeI | CAATTG | 1 cut(s) | 246 |
| MluCI | AATT | 7 cut(s) | 30, 98, 119, 246, 332, 346, 351 |
| MlyI | GAGTC | 1 cut(s) | 226 |
| MnlI | CCTC | 2 cut(s) | 192, 371 |
| MseI | TTAA | 3 cut(s) | 33, 164, 350 |
| MspR9I | CCNGG | 1 cut(s) | 329 |
| MunI | CAATTG | 1 cut(s) | 246 |
| MvaI | CCWGG | 1 cut(s) | 329 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 15 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 334 |
| PkrI | GCNGC | 2 cut(s) | 20, 117 |
| PleI | GAGTC | 1 cut(s) | 226 |
| PpsI | GAGTC | 1 cut(s) | 226 |
| Psp6I | CCWGG | 1 cut(s) | 327 |
| PspGI | CCWGG | 1 cut(s) | 327 |
| PspPI | GGNCC | 1 cut(s) | 206 |
| RsaI | GTAC | 2 cut(s) | 88, 170 |
| RsaNI | GTAC | 2 cut(s) | 87, 169 |
| SaqAI | TTAA | 3 cut(s) | 33, 164, 350 |
| SatI | GCNGC | 2 cut(s) | 19, 116 |
| Sau96I | GGNCC | 1 cut(s) | 206 |
| ScaI | AGTACT | 1 cut(s) | 88 |
| SchI | GAGTC | 1 cut(s) | 226 |
| ScrFI | CCNGG | 1 cut(s) | 329 |
| SetI | ASST | 4 cut(s) | 170, 203, 274, 400 |
| SfaNI | GCATC | 3 cut(s) | 5, 35, 141 |
| Sse9I | AATT | 7 cut(s) | 30, 98, 119, 246, 332, 346, 351 |
| SsiI | CCGC | 2 cut(s) | 19, 116 |
| SspMI | CTAG | 1 cut(s) | 155 |
| StyD4I | CCNGG | 1 cut(s) | 327 |
| TaaI | ACNGT | 2 cut(s) | 300, 358 |
| TaqII | GACCGA | 1 cut(s) | 155 |
| TasI | AATT | 7 cut(s) | 30, 98, 119, 246, 332, 346, 351 |
| TatI | WGTACW | 1 cut(s) | 86 |
| TauI | GCSGC | 2 cut(s) | 21, 118 |
| Tru1I | TTAA | 3 cut(s) | 33, 164, 350 |
| Tru9I | TTAA | 3 cut(s) | 33, 164, 350 |
| TscAI | CASTG | 1 cut(s) | 65 |
| TspDTI | ATGAA | 2 cut(s) | 17, 279 |
| TspGWI | ACGGA | 2 cut(s) | 57, 95 |
| TspRI | CASTG | 1 cut(s) | 65 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 334 |
| XapI | RAATTY | 1 cut(s) | 346 |
| XspI | CTAG | 1 cut(s) | 155 |
| ZrmI | AGTACT | 1 cut(s) | 88 |