Rroxscaffold_7G00162680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002876
Physical Location & Seq
Reverse (-)
5062756 .. 5065727
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162680.1

Sequence Viewer

Length: 465 bp
ATGCAAGGTGTCTTATCCGGGAGGCTGGGTGTTCTTCATGGAGAGTCTGTGAGCTTGGTGGCAGTTAAGATGAGATTGGGGAATGGCGATGCTGAAGGAGACATGCATGATCATGTCCTCCTAGTTAAGTGGTGTCCCGTCCATTTAGTAAAAAGAAAAGTCTCCGGTAAAGCCCCTCGCGGTTTCCCCGAATTTGTCATCCTCCATAGACACGGTGCTGTTCACCGGCCCGAGGACAACCGCTCCAAAATATTGACAATCGAAGAGGTCATTGTAAATATCGCACCTGCTCCGCGCTGTTCACCGGACCGGATACAACCCCTTGTTCACTCCATTGCCGGCGGAAGTACAACCGATTCCGAGTCCGAATTTGGTCTAAAAATTGGTTCCCCTAAACATTATGTAGAAAATTCCACCAAGGTTTTCACAGATGCACATGAAGGACGACAACCAACCGATCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.85

Weight (kDa)

8.65

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 295
Acc36I ACCTGC 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 2 cut(s) 180, 295
AciI CCGC 4 cut(s) 180, 241, 293, 342
AcsI RAATTY 3 cut(s) 191, 368, 409
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 93, 166
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 1 cut(s) 227
ApoI RAATTY 3 cut(s) 191, 368, 409
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 228, 307
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 215, 294
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 307
BciVI GTATCC 1 cut(s) 306
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 93, 166
BfaI CTAG 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 295
BfuI GTATCC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 228, 307
BmiI GGNNCC 1 cut(s) 388
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 2 cut(s) 79, 421
BpuMI CCSGG 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 231, 417
BsaWI WCCGGW 3 cut(s) 164, 304, 309
BsaXI ACNNNNNCTCC 6 cut(s) 13, 33, 43, 63, 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse118I RCCGGY 2 cut(s) 225, 338
Bse3DI GCAATG 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 231, 417
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 333
BseYI CCCAGC 1 cut(s) 25
Bsh1236I CGCG 2 cut(s) 180, 295
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 1 cut(s) 229
BsiEI CGRYCG 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 6 cut(s) 18, 165, 226, 305, 310, 339
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 2 cut(s) 93, 166
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 1 cut(s) 229
BsoBI CYCGRG 1 cut(s) 230
Bsp143I GATC 2 cut(s) 109, 457
BspACI CCGC 4 cut(s) 180, 241, 293, 342
BspANI GGCC 1 cut(s) 229
BspFNI CGCG 2 cut(s) 180, 295
BspLI GGNNCC 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 295
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 333
BsrFI RCCGGY 2 cut(s) 225, 338
BssAI RCCGGY 2 cut(s) 225, 338
BssECI CCNNGG 2 cut(s) 231, 417
BssMI GATC 2 cut(s) 109, 457
BssT1I CCWWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 340
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 2 cut(s) 180, 295
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 2 cut(s) 112, 460
BstMAI GTCTC 2 cut(s) 93, 166
BstMBI GATC 2 cut(s) 109, 457
BstMCI CGRYCG 1 cut(s) 460
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 17
BstUI CGCG 2 cut(s) 180, 295
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 198
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 340
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 2 cut(s) 225, 338
Cfr13I GGNCC 2 cut(s) 228, 307
CpoI CGGWCCG 1 cut(s) 307
Csp6I GTAC 1 cut(s) 348
CspI CGGWCCG 1 cut(s) 307
CviAII CATG 5 cut(s) 38, 103, 107, 113, 437
CviJI RGCY 4 cut(s) 25, 54, 173, 229
CviKI_1 RGCY 4 cut(s) 25, 54, 173, 229
CviQI GTAC 1 cut(s) 348
DpnI GATC 2 cut(s) 111, 459
DpnII GATC 2 cut(s) 109, 457
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
EciI GGCGGA 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 5 cut(s) 41, 106, 110, 116, 440
FaiI YATR 7 cut(s) 39, 104, 108, 114, 207, 402, 438
FaqI GGGAC 1 cut(s) 120
FatI CATG 5 cut(s) 37, 102, 106, 112, 436
FbaI TGATCA 1 cut(s) 109
FokI GGATG 1 cut(s) 185
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 296
GsaI CCCAGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 229
HapII CCGG 6 cut(s) 18, 165, 226, 305, 310, 339
HhaI GCGC 1 cut(s) 297
Hin1II CATG 5 cut(s) 41, 106, 110, 116, 440
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HinfI GANTC 3 cut(s) 44, 356, 362
HpaII CCGG 6 cut(s) 18, 165, 226, 305, 310, 339
HphI GGTGA 2 cut(s) 215, 294
Hpy166II GTNNAC 3 cut(s) 223, 302, 328
Hpy188I TCNGA 2 cut(s) 361, 367
Hpy8I GTNNAC 3 cut(s) 223, 302, 328
HpyAV CCTTC 2 cut(s) 89, 434
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 3 cut(s) 4, 106, 434
Hsp92II CATG 5 cut(s) 41, 106, 110, 116, 440
HspAI GCGC 1 cut(s) 295
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 2 cut(s) 109, 457
LmnI GCTCC 2 cut(s) 248, 295
LpnPI CCDG 8 cut(s) 11, 31, 178, 239, 300, 318, 323, 352
LweI GCATC 2 cut(s) 79, 421
MaeI CTAG 1 cut(s) 122
MalI GATC 2 cut(s) 111, 459
MbiI CCGCTC 1 cut(s) 243
MboI GATC 2 cut(s) 109, 457
MboII GAAGA 2 cut(s) 26, 275
MluCI AATT 4 cut(s) 191, 368, 381, 409
MlyI GAGTC 2 cut(s) 53, 371
MnlI CCTC 6 cut(s) 15, 128, 186, 212, 226, 259
Mph1103I ATGCAT 1 cut(s) 108
MroNI GCCGGC 1 cut(s) 338
MseI TTAA 2 cut(s) 66, 126
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 6 cut(s) 18, 165, 226, 305, 310, 339
MspR9I CCNGG 1 cut(s) 19
MvnI CGCG 2 cut(s) 180, 295
NaeI GCCGGC 1 cut(s) 340
NciI CCSGG 1 cut(s) 19
NdeII GATC 2 cut(s) 109, 457
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 5 cut(s) 41, 106, 110, 116, 440
NlaIV GGNNCC 1 cut(s) 388
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 1 cut(s) 106
PaqCI CACCTGC 1 cut(s) 295
PdiI GCCGGC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 17
Ple19I CGATCG 1 cut(s) 460
PleI GAGTC 2 cut(s) 52, 370
PpsI GAGTC 2 cut(s) 52, 370
PspFI CCCAGC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 2 cut(s) 228, 307
PvuI CGATCG 1 cut(s) 460
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
RseI CAYNNNNRTG 1 cut(s) 111
Rsr2I CGGWCCG 1 cut(s) 307
RsrII CGGWCCG 1 cut(s) 307
SaqAI TTAA 2 cut(s) 66, 126
Sau3AI GATC 2 cut(s) 109, 457
Sau96I GGNCC 2 cut(s) 228, 307
SchI GAGTC 2 cut(s) 53, 371
ScrFI CCNGG 1 cut(s) 19
SetI ASST 5 cut(s) 10, 56, 270, 289, 423
SfaNI GCATC 2 cut(s) 79, 421
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 4 cut(s) 191, 368, 381, 409
SsiI CCGC 4 cut(s) 180, 241, 293, 342
SspI AATATT 1 cut(s) 252
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 261
TasI AATT 4 cut(s) 191, 368, 381, 409
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 66, 126
Tru9I TTAA 2 cut(s) 66, 126
TspDTI ATGAA 2 cut(s) 26, 453
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 3 cut(s) 191, 368, 409
XceI RCATGY 1 cut(s) 106
XspI CTAG 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.