Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002876

Physical Location & Seq

Genomic Coordinates Forward (+)

26179347 .. 26181257

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG248900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGACGGACAGGAAGTGGACAACATAGTGCAACAGACAACAACAATCCACTTATGCTTCGAGACGACCCAGTTTTCGTCCATATAGTTAGTCCAGCTGCACGAAACACCGTCACGATGATGCAGGATGTCCCTCAACCATTTGTTCAGCGTTTCATGGGGGGGATTATGCAACGAGGGGAAATATCAAGTTGCATGGATTGGAGAGGTGCAAGTGGGGGGTTGCGGTTCATAGGGAGGGAAATGTACGAGGGTGGTATGGAATTTTCAGTGACAAGATTTGACTATCGTGGTAATCTTCAGTTTAAGGCTCCAGACGGGAAACGTCCCAAGGGATCACCACCTGGAATCCCTAGTTTTTATCCGTGTTTCATCATACTGGTTACGCCAAATGGAACAAATAGCGCTGATGTGGAATTACCGGAGTGGACCTCAATACTTATCCCTCGCGATGATATTGGAAATGTACGCCTGCATATAGAGGGTGTGACAGGGACATCGTGGCCTGCAACGCTGATGGTGCGTGGAGGCAGGAAGGTTATATGTGGAGGATGGAATCAGTTTGTGAAAGACAATTTTGGGGATCACTCGAAATGGTGTATTATGACTTTGGAATCTCCTCGTAACTCCCGTGCAAGGATATTCAGCAACTATGGGGGGCTGGCGTCCCTTGCAAACATGATGGTGCTTGCAAATCAGTTGGATGAGTTGTTTGTGGATAATTTTCTGTCGATTCAATCTGCATATGAGGATGTCAGTAGTGACGGAACTATGTCAACCAACATGGAGGATGTTAGTTCAGTGGATGAGGGTCAGGAGTCAGCTGGGGAGGACCCTAGTTCTGTTGAAGTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

31.37

Weight (kDa)

4.9

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313861
rosa_laevigata	RLG00000000965
rosa_multiflora	Rmu_co8273039.1_g000001 Rmu_sc0000931.1_g000012 Rmu_sc0002045.1_g000026 Rmu_sc0003179.1_g000029 Rmu_sc0006198.1_g000015
rosa_roxburghii	Rroxscaffold_1G00068970 Rroxscaffold_1G00068980 Rroxscaffold_1G00068990 Rroxscaffold_2G00129080 Rroxscaffold_2G00129090 Rroxscaffold_4G00309350 Rroxscaffold_7G00162680 Rroxscaffold_7G00162690
rosa_samantha	Rh1AG005200 Rh1AG007200 Rh1AG007300 Rh1CG040300 Rh1CG040400 Rh1DG029100 Rh2AG353600 Rh3BG122100 Rh5AG305400 Rh5CG248700 Rh5CG248900 Rh5CG249000 Rh6BG075500 Rh6BG075600 Rh6CG151700 Rh7DG361800 Rh7DG361900 Rh7DG362800 Rh7DG363700 Rh7DG363800 Rh7DG364100
rosa_wichuraiana	Rw1G000280 Rw1G010450 Rw6G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	450
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	2 cut(s)	343, 591
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	665
AfaI	GTAC	3 cut(s)	248, 468, 854
AfeI	AGCGCT	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	636
AgsI	TTSAA	2 cut(s)	737, 848
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	2 cut(s)	98, 824
AluI	AGCT	2 cut(s)	98, 824
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	343, 591
Aor51HI	AGCGCT	1 cut(s)	406
AoxI	GGCC	1 cut(s)	503
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	263
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	429, 832
AsuHPI	GGTGA	1 cut(s)	330
AvaII	GGWCC	2 cut(s)	429, 832
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	3 cut(s)	511, 546, 676
BciT130I	CCWGG	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	354, 837
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	429, 832
BmgT120I	GGNCC	2 cut(s)	429, 832
BmiI	GGNNCC	2 cut(s)	312, 834
BmrFI	CCNGG	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpmI	CTGGAG	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	665
BsaJI	CCNNGG	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	636
Bse1I	ACTGG	2 cut(s)	71, 384
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	6 cut(s)	133, 557, 709, 757, 796, 811
BseLI	CCNNNNNNNGG	1 cut(s)	636
BseNI	ACTGG	2 cut(s)	71, 384
BseRI	GAGGAG	1 cut(s)	609
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	1 cut(s)	824
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	5 cut(s)	18, 116, 312, 508, 652
BslI	CCNNNNNNNGG	1 cut(s)	636
BsmAI	GTCTC	1 cut(s)	57
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	5 cut(s)	18, 116, 312, 508, 652
BsnI	GGCC	1 cut(s)	505
Bsp143I	GATC	2 cut(s)	335, 583
Bsp68I	TCGCGA	1 cut(s)	450
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	312, 834
BspPI	GGATC	2 cut(s)	343, 591
BsrI	ACTGG	2 cut(s)	71, 384
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	2 cut(s)	335, 583
BssNI	GRCGYC	1 cut(s)	665
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	112
BstACI	GRCGYC	1 cut(s)	665
BstC8I	GCNNGC	4 cut(s)	473, 507, 663, 690
BstF5I	GGATG	6 cut(s)	133, 557, 709, 757, 796, 811
BstFNI	CGCG	1 cut(s)	450
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	2 cut(s)	338, 586
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	2 cut(s)	335, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	511, 520, 671
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	505
BtgZI	GCGATG	1 cut(s)	465
BtsCI	GGATG	6 cut(s)	133, 557, 709, 757, 796, 811
BtsIMutI	CAGTG	2 cut(s)	276, 807
BtuMI	TCGCGA	1 cut(s)	450
Cac8I	GCNNGC	4 cut(s)	473, 507, 663, 690
CfoI	GCGC	1 cut(s)	407
Cfr13I	GGNCC	2 cut(s)	429, 832
CseI	GACGC	1 cut(s)	654
Csp6I	GTAC	3 cut(s)	247, 467, 853
CviAII	CATG	4 cut(s)	157, 196, 679, 784
CviJI	RGCY	5 cut(s)	98, 311, 505, 661, 824
CviKI_1	RGCY	5 cut(s)	98, 311, 505, 661, 824
CviQI	GTAC	3 cut(s)	247, 467, 853
DpnI	GATC	2 cut(s)	337, 585
DpnII	GATC	2 cut(s)	335, 583
Eco130I	CCWWGG	1 cut(s)	330
Eco47I	GGWCC	2 cut(s)	429, 832
Eco47III	AGCGCT	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	832
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	4 cut(s)	160, 199, 682, 787
FaqI	GGGAC	5 cut(s)	18, 116, 312, 508, 652
FatI	CATG	4 cut(s)	156, 195, 678, 783
FauNDI	CATATG	1 cut(s)	745
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	6 cut(s)	140, 564, 716, 764, 803, 818
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	354, 837
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	828
GsuI	CTGGAG	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	505
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	1 cut(s)	654
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	4 cut(s)	160, 199, 682, 787
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HinfI	GANTC	5 cut(s)	348, 556, 614, 733, 818
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	1 cut(s)	330
Hpy166II	GTNNAC	4 cut(s)	20, 429, 777, 853
Hpy188III	TCNNGA	5 cut(s)	62, 115, 314, 449, 815
Hpy8I	GTNNAC	4 cut(s)	20, 429, 777, 853
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	511, 520, 671
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	4 cut(s)	160, 199, 682, 787
HspAI	GCGC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	335, 583
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	2 cut(s)	354, 837
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	6 cut(s)	112, 271, 382, 487, 623, 761
MalI	GATC	2 cut(s)	337, 585
MboI	GATC	2 cut(s)	335, 583
MboII	GAAGA	1 cut(s)	290
MluCI	AATT	4 cut(s)	263, 416, 574, 721
MlyI	GAGTC	1 cut(s)	827
MmeI	TCCRAC	1 cut(s)	681
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	2 cut(s)	119, 683
MspA1I	CMGCKG	2 cut(s)	98, 824
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	511, 520, 671
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	2 cut(s)	335, 583
NlaIII	CATG	4 cut(s)	160, 199, 682, 787
NlaIV	GGNNCC	2 cut(s)	312, 834
NmuCI	GTSAC	4 cut(s)	112, 271, 487, 761
NruI	TCGCGA	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	628
PfeI	GAWTC	4 cut(s)	348, 556, 614, 733
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	826
PpsI	GAGTC	1 cut(s)	826
PpuMI	RGGWCCY	1 cut(s)	832
Psp5II	RGGWCCY	1 cut(s)	832
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	824
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	312, 834
PspPI	GGNCC	2 cut(s)	429, 832
PspPPI	RGGWCCY	1 cut(s)	832
PvuII	CAGCTG	2 cut(s)	98, 824
RruI	TCGCGA	1 cut(s)	450
RsaI	GTAC	3 cut(s)	248, 468, 854
RsaNI	GTAC	3 cut(s)	247, 467, 853
RseI	CAYNNNNRTG	2 cut(s)	119, 683
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	335, 583
Sau96I	GGNCC	2 cut(s)	429, 832
SchI	GAGTC	1 cut(s)	827
ScrFI	CCNGG	1 cut(s)	345
SetI	ASST	7 cut(s)	100, 211, 328, 346, 434, 540, 826
SfaNI	GCATC	1 cut(s)	111
SinI	GGWCC	2 cut(s)	429, 832
SmiMI	CAYNNNNRTG	2 cut(s)	119, 683
Sse9I	AATT	4 cut(s)	263, 416, 574, 721
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	354, 837
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	3 cut(s)	61, 590, 731
TasI	AATT	4 cut(s)	263, 416, 574, 721
TatI	WGTACW	1 cut(s)	852
TfiI	GAWTC	4 cut(s)	348, 556, 614, 733
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	276, 807
TseFI	GTSAC	4 cut(s)	112, 271, 487, 761
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	4 cut(s)	112, 271, 487, 761
TspDTI	ATGAA	3 cut(s)	145, 220, 361
TspGWI	ACGGA	3 cut(s)	22, 354, 780
TspRI	CASTG	2 cut(s)	276, 807
VpaK11BI	GGWCC	2 cut(s)	429, 832
XapI	RAATTY	1 cut(s)	263
XspI	CTAG	2 cut(s)	354, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.