Rh1AG007200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002876
Physical Location & Seq
Forward (+)
1023859 .. 1026851
2993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG007200.1

Sequence Viewer

Length: 606 bp
ATGCAATGGGACGAAGCAGACTGGTGTTCCTGTGAGTCAGAGCAGGGTCTTTGTAATTACAAAGTTAGGGGGATAATGATTCAGGGGACGACGGTGGCGCCACTGTTCTTATTCAGAAATAGGAGAAGAACGAGATCAAGCTTCCCTCTCCCATTGTTGAAAGTGAAAGAGATGGGACGGACAGAAAGTGGACAGCATAGCGTGACACACAACAACAATCCACTTATGCTTCGAGACGACCCAGTTTTCGTCCATATAGTTAGTCCAGCTGCACGGAATACCGTGACGATGGATGTCCCTCAACCATTTGTTAAGCGTTTCATGGGGGGGGGATTATGCAACGAGGGGAAATATCAAGTTATATGGATTGGAGAGATGCGTGCAAGTGGGGAGTTGCAGTTCATAGGGAGGGAAATGTACAAGGGTGGTATGGAATTTTCAGTGACAAGATTTGACCATCGAGGTGATCTTCAGTTTAAGGCTCCAGAGGGGAAATGGGCGAAGGGATCACCACCTGGAATCCCTGGTTTTTATCCATGCTTCATCGTACTGGTTACGCCAAATCGAACAAATAACGCTGATGTGGCCTGCATATTGAGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.73

Weight (kDa)

9.13

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AclWI GGATC 1 cut(s) 514
AcsI RAATTY 1 cut(s) 434
AcuI CTGAAG 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 98
AfaI GTAC 2 cut(s) 419, 549
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 2 cut(s) 514, 523
AloI GAACNNNNNNTCC 2 cut(s) 383, 415
AluBI AGCT 2 cut(s) 141, 269
AluI AGCT 2 cut(s) 141, 269
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 514
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 434
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 476, 501
BanI GGYRCC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 256
BccI CCATC 3 cut(s) 166, 283, 465
BciT130I CCWGG 2 cut(s) 516, 525
BcoDI GTCTC 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 101
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 516, 525
BmiI GGNNCC 2 cut(s) 99, 483
BmrFI CCNGG 2 cut(s) 516, 525
BmrI ACTGGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 236
BpmI CTGGAG 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bse1I ACTGG 3 cut(s) 26, 242, 555
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 2 cut(s) 516, 525
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 11
BseNI ACTGG 3 cut(s) 26, 242, 555
BseXI GCAGC 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 587
BshNI GGYRCC 1 cut(s) 97
BslFI GGGAC 4 cut(s) 23, 100, 189, 281
BsmAI GTCTC 1 cut(s) 228
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 4 cut(s) 23, 100, 189, 281
BsnI GGCC 1 cut(s) 587
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 3 cut(s) 134, 466, 506
BspANI GGCC 1 cut(s) 587
BspLI GGNNCC 2 cut(s) 99, 483
BspPI GGATC 1 cut(s) 514
BspT107I GGYRCC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 3 cut(s) 26, 242, 555
BssECI CCNNGG 1 cut(s) 523
BssMI GATC 3 cut(s) 134, 466, 506
BssNI GRCGYC 1 cut(s) 98
Bst2UI CCWGG 2 cut(s) 516, 525
Bst4CI ACNGT 3 cut(s) 94, 105, 283
BstACI GRCGYC 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 381, 589
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 3 cut(s) 137, 469, 509
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 3 cut(s) 134, 466, 506
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstNI CCWGG 2 cut(s) 516, 525
BstSCI CCNGG 2 cut(s) 514, 523
BstV1I GCAGC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 587
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 101, 447
Cac8I GCNNGC 2 cut(s) 381, 589
CfoI GCGC 1 cut(s) 100
Csp6I GTAC 2 cut(s) 418, 548
CviAII CATG 2 cut(s) 322, 537
CviJI RGCY 4 cut(s) 141, 269, 482, 587
CviKI_1 RGCY 4 cut(s) 141, 269, 482, 587
CviQI GTAC 2 cut(s) 418, 548
DinI GGCGCC 1 cut(s) 99
DpnI GATC 3 cut(s) 136, 468, 508
DpnII GATC 3 cut(s) 134, 466, 506
Eco57I CTGAAG 1 cut(s) 455
EcoRII CCWGG 2 cut(s) 514, 523
EgeI GGCGCC 1 cut(s) 99
EheI GGCGCC 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 2 cut(s) 325, 540
FaqI GGGAC 4 cut(s) 23, 100, 189, 281
FatI CATG 2 cut(s) 321, 536
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 270
GlaI GCGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 1 cut(s) 587
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 2 cut(s) 325, 540
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 3 cut(s) 35, 79, 519
HphI GGTGA 2 cut(s) 476, 501
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 40, 116
Hpy188III TCNNGA 2 cut(s) 233, 485
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 496
HpyCH4III ACNGT 3 cut(s) 94, 105, 283
HpyCH4V TGCA 6 cut(s) 4, 272, 339, 383, 397, 591
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 2 cut(s) 325, 540
HspAI GCGC 1 cut(s) 98
KasI GGCGCC 1 cut(s) 97
Kzo9I GATC 3 cut(s) 134, 466, 506
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 366
MaeIII GTNAC 4 cut(s) 202, 283, 442, 553
MalI GATC 3 cut(s) 136, 468, 508
MboI GATC 3 cut(s) 134, 466, 506
MboII GAAGA 2 cut(s) 138, 461
MluCI AATT 2 cut(s) 55, 434
Mly113I GGCGCC 1 cut(s) 98
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 7 cut(s) 156, 309, 337, 402, 455, 481, 591
MseI TTAA 2 cut(s) 312, 477
MslI CAYNNNNRTG 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 269
MspR9I CCNGG 2 cut(s) 516, 525
MvaI CCWGG 2 cut(s) 516, 525
MwoI GCNNNNNNNGC 1 cut(s) 584
NarI GGCGCC 1 cut(s) 98
NdeII GATC 3 cut(s) 134, 466, 506
NlaIII CATG 2 cut(s) 325, 540
NlaIV GGNNCC 2 cut(s) 99, 483
NmuCI GTSAC 3 cut(s) 202, 283, 442
PfeI GAWTC 2 cut(s) 79, 519
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 43
PluTI GGCGCC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 43
Psp6I CCWGG 2 cut(s) 514, 523
PspGI CCWGG 2 cut(s) 514, 523
PspN4I GGNNCC 2 cut(s) 99, 483
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 2 cut(s) 419, 549
RsaNI GTAC 2 cut(s) 418, 548
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 2 cut(s) 312, 477
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 3 cut(s) 134, 466, 506
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 516, 525
SetI ASST 4 cut(s) 143, 271, 466, 517
SfaNI GCATC 1 cut(s) 366
SfoI GGCGCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 2 cut(s) 55, 434
SspDI GGCGCC 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 514, 523
TaaI ACNGT 3 cut(s) 94, 105, 283
TaqI TCGA 3 cut(s) 232, 460, 565
TasI AATT 2 cut(s) 55, 434
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 2 cut(s) 79, 519
Tru1I TTAA 2 cut(s) 312, 477
Tru9I TTAA 2 cut(s) 312, 477
TscAI CASTG 2 cut(s) 108, 447
TseFI GTSAC 3 cut(s) 202, 283, 442
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 3 cut(s) 202, 283, 442
TspDTI ATGAA 3 cut(s) 310, 391, 532
TspGWI ACGGA 2 cut(s) 193, 289
TspRI CASTG 2 cut(s) 108, 447
XapI RAATTY 1 cut(s) 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.