Rw1G000280

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002876
Physical Location & Seq
Forward (+)
390320 .. 398823
8504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000280.1

Sequence Viewer

Length: 1590 bp
ATGTTCACCGACATTCCCTCCCATATTTCCCTCCATTTGTCTCCCCCCAAATTTAGTTCCCTCTCAGCAGGCAATATGAGGTGGCTGACGGAAGATTTCAGTGGATTGTTGTTGGACGAGAACCTGGTGGCACAAGCTATCAAGCTACTGATAGAAACGAAACATGTTCTAATATCAAATTTATCAGCAATCGGAAATGGAACGGCTTATACCAGATCCTTTAATTCCTTGCAGAACAGCCTTGGTCTAAAGTGGGTTTTTGATTTTTTTTATTGTTTGTTTCCTCCAACTGCTGCTACTGTGAGCTCCGCCCTACTCTTGGGTATATGTAGTCTCCCTGATACCATATTTAGAGTAAGCATTTCTCTTCGAAAAATGAATTTTAGATTACAAAAACTATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTACTGATTTGGCAAAACTAGTTCCTGGCCGAGTGTCCACTGAGGTAGATGCACGTCTTGCTTATGACACGCATGGAATTATAAGGAAGGTCATCCCTCCTCCATTTGTGATAGAGTTCATAAATGGTGACAGATGCCGGCAAGGAAAGATAAAACTAGAAGGATTAGAACAGTGCCAGTTGCGGGTTGAAATAAATACGGATGGGAGGGGAGTTGAATTGGGTGAAGGGTGGGCAGAATTTGTGGGGAAAAATTTGGAGGACGGGTGGATGCTAGTGCTGTTAAGGAGATATGGCCGGTCAGGAGCTCTGATGGTGACAGCACCAAGGGGGAGACAGACAAAGGGGACACCACGTGGAGTTGGGGTCATTTATCCATCATTTGCACAGTTGGTTATTCCAAGTGGAATGAACAGCGAAGTGCTAGAAATACCAGCAGGGATCTTTCGTGGAGGGTCAAGTCGAACCACGATTGAAAGTAAGGTTTGGTTGAATAATATGAATTGGGGGATGTCGTGCAATGCATGTATCAAGGTAAGTGAGGATAGAGGATTCATAAAAGGAGGTTGGGACAGGTGGGTGAGTGAAAACATTGTAAGGGTATGCAAGTGGTGCATTGTGGATTATAATTGTTCAAAAAATGAGGCAACTGTGATGCCGTTTCTGCAAAGTGGAGGGGTGATGTCGAATGTGGCAATGATGAATGCCGTAACAATCGGTGATGCTATGTACATTGATAGTTGTGATGAAGAATATCCAGAGGATTCAGAGGAAGATGAGGAAGATCTGACTGATAAAGGAGAAGCTGGTCATAAGGTACAGTTTCCAATACCTCAGAGTGTGATCCTAGTTGGAAAAAAATATGGGCAACTTTCCACAAAGTATGCAAAGCAATATTTCCCGGGTGTTGGTAGTCGTCAGGTTGTAGTGAGGACTCGAGATGGACAATCATGGGAGGTTCCATTTTTAAAGTCAAATCAAACATATAGGTTCAGCGGAGGCTTTGTGGAACTAAGGAAAGGATATGGGCTGAAGCTAGTTCAAGTTAGCGGTAACTCAATCCTGTATGGGTATCCGGAAAAATTTGTCATAGTGTTCTACAATTTAAAACTGGAGACCACGTGGTGGAGCCGTGCACGAGATGAGAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

529

Amino Acids

59.09

Weight (kDa)

8.59

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 518, 1062
AccB7I CCANNNNNTGG 1 cut(s) 1560
AccIII TCCGGA 1 cut(s) 1510
AciI CCGC 4 cut(s) 309, 619, 1431, 1485
AclWI GGATC 3 cut(s) 210, 884, 1273
AcoI YGGCCR 2 cut(s) 463, 730
AcsI RAATTY 6 cut(s) 50, 178, 379, 674, 688, 1517
AcuI CTGAAG 1 cut(s) 1487
AcvI CACGTG 2 cut(s) 791, 1557
AdeI CACNNNGTG 2 cut(s) 791, 1560
AfaI GTAC 3 cut(s) 439, 1166, 1254
AfiI CCNNNNNNNGG 4 cut(s) 319, 619, 1343, 1560
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 6 cut(s) 626, 653, 911, 928, 1071, 1478
AhlI ACTAGT 1 cut(s) 454
AjiI CACGTC 1 cut(s) 491
AjnI CCWGG 2 cut(s) 123, 460
AluBI AGCT 6 cut(s) 137, 145, 306, 743, 1241, 1471
AluI AGCT 6 cut(s) 137, 145, 306, 743, 1241, 1471
Alw21I GWGCWC 3 cut(s) 308, 745, 1573
Alw26I GTCTC 4 cut(s) 45, 338, 763, 1544
Alw44I GTGCAC 1 cut(s) 1569
AlwI GGATC 3 cut(s) 210, 884, 1273
Ama87I CYCGRG 2 cut(s) 1336, 1371
Aor13HI TCCGGA 1 cut(s) 1510
AoxI GGCC 2 cut(s) 463, 730
ApaLI GTGCAC 1 cut(s) 1569
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 6 cut(s) 50, 178, 379, 674, 688, 1517
AsuC2I CCSGG 2 cut(s) 1337, 1338
AsuHPI GGTGA 6 cut(s) 575, 671, 763, 1027, 1126, 1166
AsuII TTCGAA 1 cut(s) 370
AvaI CYCGRG 2 cut(s) 1336, 1371
BaeGI GKGCMC 1 cut(s) 1573
BanII GRGCYC 2 cut(s) 308, 745
BauI CACGAG 1 cut(s) 1572
BbrPI CACGTG 2 cut(s) 791, 1557
Bbv12I GWGCWC 3 cut(s) 308, 745, 1573
BbvI GCAGC 1 cut(s) 280
BccI CCATC 4 cut(s) 632, 742, 820, 1370
BceAI ACGGC 4 cut(s) 219, 1078, 1127, 1551
BciT130I CCWGG 2 cut(s) 125, 462
BciVI GTATCC 1 cut(s) 1518
BcnI CCSGG 2 cut(s) 1337, 1338
BcoDI GTCTC 4 cut(s) 45, 338, 763, 1544
BcuI ACTAGT 1 cut(s) 454
BfaI CTAG 6 cut(s) 455, 593, 710, 860, 1283, 1472
BfuI GTATCC 1 cut(s) 1518
BglII AGATCT 1 cut(s) 1219
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 4 cut(s) 125, 462, 1337, 1338
BmeT110I CYCGRG 2 cut(s) 1336, 1371
BmgBI CACGTC 1 cut(s) 491
BmiI GGNNCC 2 cut(s) 1395, 1565
BmrFI CCNGG 4 cut(s) 125, 462, 1337, 1338
BmsI GCATC 5 cut(s) 475, 560, 696, 1080, 1147
BpmI CTGGAG 1 cut(s) 1568
Bpu14I TTCGAA 1 cut(s) 370
BpuMI CCSGG 2 cut(s) 1337, 1338
BsaAI YACGTR 2 cut(s) 791, 1557
BsaI GGTCTC 1 cut(s) 1544
BsaJI CCNNGG 3 cut(s) 241, 761, 1336
BsaWI WCCGGW 1 cut(s) 1510
BsaXI ACNNNNNCTCC 9 cut(s) 32, 686, 716, 786, 816, 1425, 1455, 1541, 1571
Bsc4I CCNNNNNNNGG 4 cut(s) 319, 619, 1343, 1560
Bse118I RCCGGY 2 cut(s) 573, 732
Bse1I ACTGG 2 cut(s) 613, 1551
Bse3DI GCAATG 2 cut(s) 961, 1137
BseAI TCCGGA 1 cut(s) 1510
BseBI CCWGG 2 cut(s) 125, 462
BseDI CCNNGG 3 cut(s) 241, 761, 1336
BseGI GGATG 4 cut(s) 528, 643, 711, 951
BseLI CCNNNNNNNGG 4 cut(s) 319, 619, 1343, 1560
BseMI GCAATG 2 cut(s) 961, 1137
BseMII CTCAG 3 cut(s) 78, 468, 1283
BseNI ACTGG 2 cut(s) 613, 1551
BseRI GAGGAG 1 cut(s) 525
BseSI GKGCMC 1 cut(s) 1573
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 2 cut(s) 465, 732
BsiHKAI GWGCWC 3 cut(s) 308, 745, 1573
BsiHKCI CYCGRG 2 cut(s) 1336, 1371
BsiSI CCGG 4 cut(s) 574, 733, 1337, 1511
BslFI GGGAC 2 cut(s) 796, 1019
BslI CCNNNNNNNGG 4 cut(s) 319, 619, 1343, 1560
BsmAI GTCTC 4 cut(s) 45, 338, 763, 1544
BsmFI GGGAC 2 cut(s) 796, 1019
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 2 cut(s) 465, 732
Bso31I GGTCTC 1 cut(s) 1544
BsoBI CYCGRG 2 cut(s) 1336, 1371
Bsp119I TTCGAA 1 cut(s) 370
Bsp1286I GDGCHC 3 cut(s) 308, 745, 1573
Bsp13I TCCGGA 1 cut(s) 1510
Bsp1407I TGTACA 1 cut(s) 1164
Bsp143I GATC 4 cut(s) 215, 876, 1219, 1278
BspACI CCGC 4 cut(s) 309, 619, 1431, 1485
BspANI GGCC 2 cut(s) 465, 732
BspCNI CTCAG 3 cut(s) 77, 469, 1282
BspEI TCCGGA 1 cut(s) 1510
BspLI GGNNCC 2 cut(s) 1395, 1565
BspPI GGATC 3 cut(s) 210, 884, 1273
BspT104I TTCGAA 1 cut(s) 370
BspTNI GGTCTC 1 cut(s) 1544
BsrDI GCAATG 2 cut(s) 961, 1137
BsrFI RCCGGY 2 cut(s) 573, 732
BsrGI TGTACA 1 cut(s) 1164
BsrI ACTGG 2 cut(s) 613, 1551
BssAI RCCGGY 2 cut(s) 573, 732
BssECI CCNNGG 3 cut(s) 241, 761, 1336
BssMI GATC 4 cut(s) 215, 876, 1219, 1278
BssSI CACGAG 1 cut(s) 1572
BssT1I CCWWGG 2 cut(s) 241, 761
Bst2BI CACGAG 1 cut(s) 1572
Bst2UI CCWGG 2 cut(s) 125, 462
Bst4CI ACNGT 6 cut(s) 301, 609, 825, 1087, 1257, 1586
Bst6I CTCTTC 1 cut(s) 372
BstAPI GCANNNNNTGC 2 cut(s) 494, 1047
BstAUI TGTACA 1 cut(s) 1164
BstBAI YACGTR 2 cut(s) 791, 1557
BstBI TTCGAA 1 cut(s) 370
BstC8I GCNNGC 2 cut(s) 70, 575
BstDEI CTNAG 4 cut(s) 64, 477, 1269, 1448
BstF5I GGATG 4 cut(s) 528, 643, 711, 951
BstKTI GATC 4 cut(s) 218, 879, 1222, 1281
BstMAI GTCTC 4 cut(s) 45, 338, 763, 1544
BstMBI GATC 4 cut(s) 215, 876, 1219, 1278
BstMWI GCNNNNNNNGC 3 cut(s) 494, 1047, 1099
BstNI CCWGG 2 cut(s) 125, 462
BstNSI RCATGY 2 cut(s) 167, 963
BstSCI CCNGG 4 cut(s) 123, 460, 1335, 1336
BstSLI GKGCMC 1 cut(s) 1573
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 3 cut(s) 215, 876, 1219
BstYI RGATCY 3 cut(s) 215, 876, 1219
BsuI GTATCC 1 cut(s) 1518
BsuRI GGCC 2 cut(s) 465, 732
BtrI CACGTC 1 cut(s) 491
BtsCI GGATG 4 cut(s) 528, 643, 711, 951
BtsIMutI CAGTG 3 cut(s) 106, 474, 614
Cac8I GCNNGC 2 cut(s) 70, 575
Cfr10I RCCGGY 2 cut(s) 573, 732
Cfr9I CCCGGG 1 cut(s) 1336
CsiI ACCWGGT 1 cut(s) 123
Csp6I GTAC 3 cut(s) 438, 1165, 1253
CviAII CATG 5 cut(s) 164, 405, 509, 960, 1386
CviQI GTAC 3 cut(s) 438, 1165, 1253
DdeI CTNAG 4 cut(s) 64, 477, 1269, 1448
DpnI GATC 4 cut(s) 217, 878, 1221, 1280
DpnII GATC 4 cut(s) 215, 876, 1219, 1278
DraI TTTAAA 2 cut(s) 1404, 1542
DraIII CACNNNGTG 2 cut(s) 791, 1560
EaeI YGGCCR 2 cut(s) 463, 730
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 1 cut(s) 298
Ecl136II GAGCTC 2 cut(s) 306, 743
Eco130I CCWWGG 2 cut(s) 241, 761
Eco24I GRGCYC 2 cut(s) 308, 745
Eco31I GGTCTC 1 cut(s) 1544
Eco53kI GAGCTC 2 cut(s) 306, 743
Eco57I CTGAAG 1 cut(s) 1487
Eco72I CACGTG 2 cut(s) 791, 1557
Eco88I CYCGRG 2 cut(s) 1336, 1371
EcoICRI GAGCTC 2 cut(s) 306, 743
EcoRII CCWGG 2 cut(s) 123, 460
EcoT14I CCWWGG 2 cut(s) 241, 761
EcoT22I ATGCAT 1 cut(s) 961
EcoT38I GRGCYC 2 cut(s) 308, 745
ErhI CCWWGG 2 cut(s) 241, 761
FaeI CATG 5 cut(s) 167, 408, 512, 963, 1389
FaqI GGGAC 2 cut(s) 796, 1019
FatI CATG 5 cut(s) 163, 404, 508, 959, 1385
FauI CCCGC 1 cut(s) 612
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 4 cut(s) 515, 650, 718, 958
FriOI GRGCYC 2 cut(s) 308, 745
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 6 cut(s) 455, 593, 710, 860, 1283, 1472
GluI GCNGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 1568
HaeIII GGCC 2 cut(s) 465, 732
HapII CCGG 4 cut(s) 574, 733, 1337, 1511
Hin1II CATG 5 cut(s) 167, 408, 512, 963, 1389
HinfI GANTC 3 cut(s) 987, 1199, 1369
HpaII CCGG 4 cut(s) 574, 733, 1337, 1511
HphI GGTGA 6 cut(s) 575, 671, 763, 1027, 1126, 1166
Hpy166II GTNNAC 3 cut(s) 6, 474, 1571
Hpy188I TCNGA 5 cut(s) 194, 747, 1204, 1224, 1272
Hpy188III TCNNGA 4 cut(s) 738, 1193, 1373, 1511
Hpy8I GTNNAC 3 cut(s) 6, 474, 1571
HpyAV CCTTC 3 cut(s) 517, 590, 656
HpyCH4III ACNGT 6 cut(s) 301, 609, 825, 1087, 1257, 1586
HpyCH4IV ACGT 3 cut(s) 490, 790, 1556
HpyF10VI GCNNNNNNNGC 3 cut(s) 494, 1047, 1099
HpyF3I CTNAG 4 cut(s) 64, 477, 1269, 1448
HpySE526I ACGT 3 cut(s) 490, 790, 1556
Hsp92II CATG 5 cut(s) 167, 408, 512, 963, 1389
Kpn2I TCCGGA 1 cut(s) 1510
KroI GCCGGC 1 cut(s) 573
KroNI GCCGGC 1 cut(s) 575
Kzo9I GATC 4 cut(s) 215, 876, 1219, 1278
LmnI GCTCC 3 cut(s) 311, 740, 1563
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 5 cut(s) 475, 560, 696, 1080, 1147
MabI ACCWGGT 1 cut(s) 123
MaeI CTAG 6 cut(s) 455, 593, 710, 860, 1283, 1472
MaeII ACGT 3 cut(s) 490, 790, 1556
MaeIII GTNAC 5 cut(s) 413, 563, 751, 1144, 1487
MalI GATC 4 cut(s) 217, 878, 1221, 1280
MboI GATC 4 cut(s) 215, 876, 1219, 1278
MboII GAAGA 5 cut(s) 104, 359, 1196, 1220, 1229
MflI RGATCY 3 cut(s) 215, 876, 1219
MhlI GDGCHC 3 cut(s) 308, 745, 1573
MlyI GAGTC 1 cut(s) 1363
MmeI TCCRAC 3 cut(s) 93, 311, 1267
Mph1103I ATGCAT 1 cut(s) 961
MroI TCCGGA 1 cut(s) 1510
MroNI GCCGGC 1 cut(s) 573
MseI TTAA 4 cut(s) 222, 719, 1403, 1541
MspA1I CMGCKG 1 cut(s) 1431
MspI CCGG 4 cut(s) 574, 733, 1337, 1511
MspR9I CCNGG 4 cut(s) 125, 462, 1337, 1338
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 2 cut(s) 125, 462
MwoI GCNNNNNNNGC 3 cut(s) 494, 1047, 1099
NaeI GCCGGC 1 cut(s) 575
NciI CCSGG 2 cut(s) 1337, 1338
NdeII GATC 4 cut(s) 215, 876, 1219, 1278
NgoMIV GCCGGC 1 cut(s) 573
NlaIII CATG 5 cut(s) 167, 408, 512, 963, 1389
NlaIV GGNNCC 2 cut(s) 1395, 1565
NmeAIII GCCGAG 1 cut(s) 491
NmuCI GTSAC 2 cut(s) 563, 751
NsiI ATGCAT 1 cut(s) 961
NspI RCATGY 2 cut(s) 167, 963
NspV TTCGAA 1 cut(s) 370
PaeR7I CTCGAG 1 cut(s) 1371
PciI ACATGT 1 cut(s) 163
PctI GAATGC 1 cut(s) 1144
PdiI GCCGGC 1 cut(s) 575
PfeI GAWTC 2 cut(s) 987, 1199
PflMI CCANNNNNTGG 1 cut(s) 1560
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 1 cut(s) 1363
PmaCI CACGTG 2 cut(s) 791, 1557
PmlI CACGTG 2 cut(s) 791, 1557
PpsI GAGTC 1 cut(s) 1363
Ppu21I YACGTR 2 cut(s) 791, 1557
PscI ACATGT 1 cut(s) 163
PsiI TTATAA 2 cut(s) 518, 1062
Psp124BI GAGCTC 2 cut(s) 308, 745
Psp6I CCWGG 2 cut(s) 123, 460
PspCI CACGTG 2 cut(s) 791, 1557
PspGI CCWGG 2 cut(s) 123, 460
PspN4I GGNNCC 2 cut(s) 1395, 1565
PsrI GAACNNNNNNTAC 2 cut(s) 193, 225
PsuI RGATCY 3 cut(s) 215, 876, 1219
RsaI GTAC 3 cut(s) 439, 1166, 1254
RsaNI GTAC 3 cut(s) 438, 1165, 1253
SacI GAGCTC 2 cut(s) 308, 745
SaqAI TTAA 4 cut(s) 222, 719, 1403, 1541
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 4 cut(s) 215, 876, 1219, 1278
SchI GAGTC 1 cut(s) 1363
ScrFI CCNGG 4 cut(s) 125, 462, 1337, 1338
SduI GDGCHC 3 cut(s) 308, 745, 1573
SexAI ACCWGGT 1 cut(s) 123
SfaNI GCATC 5 cut(s) 475, 560, 696, 1080, 1147
Sfr274I CTCGAG 1 cut(s) 1371
SfuI TTCGAA 1 cut(s) 370
SlaI CTCGAG 1 cut(s) 1371
SmaI CCCGGG 1 cut(s) 1338
SmlI CTYRAG 1 cut(s) 1371
SmoI CTYRAG 1 cut(s) 1371
SpeI ACTAGT 1 cut(s) 454
SsiI CCGC 4 cut(s) 309, 619, 1431, 1485
SspI AATATT 1 cut(s) 1331
SspMI CTAG 6 cut(s) 455, 593, 710, 860, 1283, 1472
SstI GAGCTC 2 cut(s) 308, 745
StyD4I CCNGG 4 cut(s) 123, 460, 1335, 1336
StyI CCWWGG 2 cut(s) 241, 761
TaaI ACNGT 6 cut(s) 301, 609, 825, 1087, 1257, 1586
TaiI ACGT 3 cut(s) 493, 793, 1559
TaqI TCGA 4 cut(s) 370, 898, 1121, 1372
TatI WGTACW 1 cut(s) 1164
TfiI GAWTC 2 cut(s) 987, 1199
Tru1I TTAA 4 cut(s) 222, 719, 1403, 1541
Tru9I TTAA 4 cut(s) 222, 719, 1403, 1541
TscAI CASTG 3 cut(s) 106, 481, 614
TseFI GTSAC 2 cut(s) 563, 751
TseI GCWGC 1 cut(s) 293
Tsp45I GTSAC 2 cut(s) 563, 751
TspDTI ATGAA 7 cut(s) 392, 544, 860, 950, 979, 1151, 1197
TspGWI ACGGA 2 cut(s) 104, 650
TspMI CCCGGG 1 cut(s) 1336
TspRI CASTG 3 cut(s) 106, 481, 614
Van91I CCANNNNNTGG 1 cut(s) 1560
VneI GTGCAC 1 cut(s) 1569
XapI RAATTY 6 cut(s) 50, 178, 379, 674, 688, 1517
XceI RCATGY 2 cut(s) 167, 963
XhoI CTCGAG 1 cut(s) 1371
XmaI CCCGGG 1 cut(s) 1336
XspI CTAG 6 cut(s) 455, 593, 710, 860, 1283, 1472
Zsp2I ATGCAT 1 cut(s) 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.