Rh1CG040400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
7562211 .. 7562621
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG040400.1

Sequence Viewer

Length: 252 bp
ATGATCGGAGCTAATGATGCCGTGTCAACGCCACAGTTGGGAAATGACGCATGTTTCCTCCAACTGGTGAGGAAACCGGATAAGAACTGTGATACATTGGAAATACCGAACCCATTTGTCCGCCGTTTTATGACCACAGCCAGAAGTCCACGAGCTAAAACAAGATTGGAGGGATTTGAAAGATACGTAACATGGTTCATAGCTGTAGACAGGGAAGGAGAGGGAGTTAGATTGGGGGATGGGTGGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.36

Weight (kDa)

7.79

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 207
AciI CCGC 1 cut(s) 121
AfiI CCNNNNNNNGG 2 cut(s) 38, 64
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 3 cut(s) 11, 155, 203
AluI AGCT 3 cut(s) 11, 155, 203
AsuHPI GGTGA 1 cut(s) 79
BauI CACGAG 1 cut(s) 150
BccI CCATC 1 cut(s) 233
BceAI ACGGC 2 cut(s) 5, 108
BfmI CTRYAG 1 cut(s) 204
BmsI GCATC 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 64
Bse1I ACTGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 2 cut(s) 38, 64
BseNI ACTGG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 38, 64
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 69
BssMI GATC 1 cut(s) 3
BssSI CACGAG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 36, 89
BstBAI YACGTR 1 cut(s) 187
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 204
BstSNI TACGTA 1 cut(s) 187
BtsCI GGATG 1 cut(s) 244
CseI GACGC 1 cut(s) 56
CviAII CATG 2 cut(s) 51, 192
CviJI RGCY 4 cut(s) 11, 140, 155, 203
CviKI_1 RGCY 4 cut(s) 11, 140, 155, 203
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EciI GGCGGA 1 cut(s) 110
Eco105I TACGTA 1 cut(s) 187
FaeI CATG 2 cut(s) 54, 195
FaiI YATR 4 cut(s) 52, 131, 193, 200
FatI CATG 2 cut(s) 50, 191
FblI GTMKAC 1 cut(s) 207
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 56
Hin1II CATG 2 cut(s) 54, 195
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 3 cut(s) 27, 149, 208
Hpy188I TCNGA 1 cut(s) 8
Hpy8I GTNNAC 3 cut(s) 27, 149, 208
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 2 cut(s) 36, 89
HpyCH4IV ACGT 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 54, 195
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 4 cut(s) 50, 90, 154, 196
LweI GCATC 1 cut(s) 7
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 4 cut(s) 63, 68, 163, 214
MspI CCGG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 54, 195
NspI RCATGY 1 cut(s) 54
Ppu21I YACGTR 1 cut(s) 187
Sau3AI GATC 1 cut(s) 3
SetI ASST 4 cut(s) 13, 157, 189, 205
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 204
SnaBI TACGTA 1 cut(s) 187
SsiI CCGC 1 cut(s) 121
TaaI ACNGT 2 cut(s) 36, 89
TaiI ACGT 1 cut(s) 189
TspDTI ATGAA 1 cut(s) 187
XceI RCATGY 1 cut(s) 54
XmiI GTMKAC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.