Rh6BG075500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002876
Physical Location & Seq
Reverse (-)
11622414 .. 11623783
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG075500.1

Sequence Viewer

Length: 408 bp
ATGATGAGTGTCCAAACAATAACTGATAGACTGTACGTTGATAGTGCTGAGGAAGAATACCCTGACGCAAATGACAATGATGAGGGAGATGATTCGTCGAATGACGATGAACAAGATGCTGAGTTGCAACAAAATCCAATCACAAGTGTTGTGGTCAGAGTGGGAGAGAAATATGCGCAACTTCCCACGGGATATGCAAAGAAATATTTCAAGGGTGTCCGTAGTCGTCCGTGTGTAGTCAGGACTGGAGACGGACAATCATGGGATGTTTCATTTCAGAAGTCAAATGACACCTATAGGTTCAGCGGCCGTTTCGTGGAACTCAGGAGAGCATATGGCCTTACAGTGGGAAACAAATGCAAGGTGTCTTACCTGGGAGGCTGGGTGTTCTTCATGGAGAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.35

Weight (kDa)

4.67

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 177
AciI CCGC 1 cut(s) 306
AcoI YGGCCR 1 cut(s) 307
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 316, 346
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 372
Alw26I GTCTC 1 cut(s) 243
AoxI GGCC 2 cut(s) 307, 337
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 178
BbvCI CCTCAGC 1 cut(s) 48
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 374
BmrFI CCNGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 186, 373
BsaXI ACNNNNNCTCC 3 cut(s) 369, 389, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 346
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 2 cut(s) 186, 373
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 2 cut(s) 316, 346
BseMII CTCAG 3 cut(s) 39, 111, 337
BseNI ACTGG 1 cut(s) 250
BseX3I CGGCCG 1 cut(s) 307
BseYI CCCAGC 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 2 cut(s) 309, 339
BsiEI CGRYCG 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 316, 346
BsmAI GTCTC 1 cut(s) 243
BsmBI CGTCTC 1 cut(s) 243
BsnI GGCC 2 cut(s) 309, 339
BspACI CCGC 1 cut(s) 306
BspANI GGCC 2 cut(s) 309, 339
BspCNI CTCAG 3 cut(s) 40, 112, 336
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 186, 373
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 33, 346
BstDEI CTNAG 3 cut(s) 48, 120, 323
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 243
BstMCI CGRYCG 1 cut(s) 310
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 295
BstZI CGGCCG 1 cut(s) 307
BsuRI GGCC 2 cut(s) 309, 339
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 351
CfoI GCGC 1 cut(s) 178
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 34
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 2 cut(s) 261, 394
CviJI RGCY 3 cut(s) 309, 339, 381
CviKI_1 RGCY 3 cut(s) 309, 339, 381
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 3 cut(s) 48, 120, 323
EaeI YGGCCR 1 cut(s) 307
EagI CGGCCG 1 cut(s) 307
EclXI CGGCCG 1 cut(s) 307
Eco52I CGGCCG 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 2 cut(s) 264, 397
FaiI YATR 7 cut(s) 174, 195, 262, 297, 334, 336, 395
FatI CATG 2 cut(s) 260, 393
FauNDI CATATG 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 307
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 307
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 307
GsaI CCCAGC 1 cut(s) 385
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 2 cut(s) 309, 339
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 264, 397
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 2 cut(s) 92, 400
Hpy188I TCNGA 2 cut(s) 158, 279
Hpy188III TCNNGA 2 cut(s) 241, 325
Hpy99I CGWCG 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 33, 346
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 127, 197, 360
HpyF3I CTNAG 3 cut(s) 48, 120, 323
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 2 cut(s) 264, 397
HspAI GCGC 1 cut(s) 176
LpnPI CCDG 7 cut(s) 75, 226, 231, 310, 359, 367, 386
LweI GCATC 1 cut(s) 106
MaeII ACGT 1 cut(s) 36
MboII GAAGA 2 cut(s) 65, 382
MnlI CCTC 3 cut(s) 43, 76, 371
MroXI GAANNNNTTC 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
NdeI CATATG 1 cut(s) 334
NlaIII CATG 2 cut(s) 264, 397
NsbI TGCGCA 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 92, 400
PkrI GCNGC 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 381
PspGI CCWGG 1 cut(s) 372
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SatI GCNGC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 374
SetI ASST 5 cut(s) 39, 296, 302, 366, 375
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 295
SsiI CCGC 1 cut(s) 306
SspI AATATT 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 33, 346
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 98
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 2 cut(s) 92, 400
TscAI CASTG 1 cut(s) 351
TspDTI ATGAA 3 cut(s) 123, 261, 382
TspGWI ACGGA 3 cut(s) 209, 219, 267
TspRI CASTG 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.