Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002876

Physical Location & Seq

Genomic Coordinates Forward (+)

24922019 .. 24929334

Gene Structure 7316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTGGGCACACCAATGGAGACACTGAAGATGAAAACAACTGCTGGAGTTGGGGGCGTTTTTCCTTCATTTGCACAGTTGGTGATTCCCGATGGCGTGAACAGCGAGGAATTGGACATACCGGGAGGGATATTACGTGGAGTGGTAGGTCGGAAGACGATTGACAATAAAATATGGGTTCACAATTTGAACTGGGAAATGTCGTACAATGCACGTATGAAGCTAAGCGAGGGAGGAGGAATGACACATAACATGTTCAGTTGTAACAAAATCCAATCCCGAGTGTTGTGGTCAGAGTGGGAGACAAATATGCGTCGGCAGTGTGTAGTGAGGATTGGAGATGGAGAATCATGGGATGTTACATTTCAGAAGTCAAATGACCCTTACAGGTTCAGCGAAGGTTTCGACAAACTAAGGAGAGGATATGAGCTTACAGTGGGAAACAAATGCAAGGGCAATGATTTGGGAAGTGATGCTAGTATAAGAGAGCCTTATGTTGACTTTGGATTACAGCTTATAGGTGCTGATCTTATGTCAATACCTGGCCTTTACAGATTTGTTCAGATGTGTAGCCCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

193

Amino Acids

21.66

Weight (kDa)

6.73

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313861
rosa_laevigata	RLG00000000965
rosa_multiflora	Rmu_co8273039.1_g000001 Rmu_sc0000931.1_g000012 Rmu_sc0002045.1_g000026 Rmu_sc0003179.1_g000029 Rmu_sc0006198.1_g000015
rosa_roxburghii	Rroxscaffold_1G00068970 Rroxscaffold_1G00068980 Rroxscaffold_1G00068990 Rroxscaffold_2G00129080 Rroxscaffold_2G00129090 Rroxscaffold_4G00309350 Rroxscaffold_7G00162680 Rroxscaffold_7G00162690
rosa_samantha	Rh1AG005200 Rh1AG007200 Rh1AG007300 Rh1CG040300 Rh1CG040400 Rh1DG029100 Rh2AG353600 Rh3BG122100 Rh5AG305400 Rh5CG248700 Rh5CG248900 Rh5CG249000 Rh6BG075500 Rh6BG075600 Rh6CG151700 Rh7DG361800 Rh7DG361900 Rh7DG362800 Rh7DG363700 Rh7DG363800 Rh7DG364100
rosa_wichuraiana	Rw1G000280 Rw1G010450 Rw6G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	3 cut(s)	223, 430, 514
AluI	AGCT	3 cut(s)	223, 430, 514
Alw26I	GTCTC	2 cut(s)	14, 296
Ama87I	CYCGRG	1 cut(s)	279
AoxI	GGCC	1 cut(s)	544
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	161
BccI	CCATC	2 cut(s)	86, 335
BciT130I	CCWGG	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	14, 296
BfaI	CTAG	1 cut(s)	477
BlpI	GCTNAGC	1 cut(s)	224
Bme1390I	CCNGG	2 cut(s)	123, 543
BmeT110I	CYCGRG	1 cut(s)	279
BmrFI	CCNGG	2 cut(s)	123, 543
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	463
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	123
BsaAI	YACGTR	2 cut(s)	137, 215
Bse1I	ACTGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	543
BseGI	GGATG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	463
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	11
BshFI	GGCC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	122
BsmAI	GTCTC	2 cut(s)	14, 296
BsnI	GGCC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	526
Bsp1720I	GCTNAGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	197
BssMI	GATC	1 cut(s)	526
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	78, 436
BstBAI	YACGTR	2 cut(s)	137, 215
BstDEI	CTNAG	2 cut(s)	224, 413
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	1 cut(s)	529
BstMAI	GTCTC	2 cut(s)	14, 296
BstMBI	GATC	1 cut(s)	526
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	121, 541
BstSLI	GKGCMC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	3 cut(s)	23, 326, 441
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	3 cut(s)	253, 351, 577
CviJI	RGCY	6 cut(s)	223, 430, 490, 514, 546, 573
CviKI_1	RGCY	6 cut(s)	223, 430, 490, 514, 546, 573
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	224, 413
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	541
FaeI	CATG	3 cut(s)	256, 354, 580
FalI	AAGNNNNNCTT	2 cut(s)	475, 507
FatI	CATG	3 cut(s)	252, 350, 576
FokI	GGATG	1 cut(s)	368
FspBI	CTAG	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	256, 354, 580
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	2 cut(s)	85, 347
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	3 cut(s)	100, 181, 499
Hpy188I	TCNGA	4 cut(s)	153, 295, 369, 564
Hpy188III	TCNNGA	2 cut(s)	89, 279
Hpy8I	GTNNAC	3 cut(s)	100, 181, 499
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	2 cut(s)	75, 392
HpyCH4III	ACNGT	2 cut(s)	78, 436
HpyCH4IV	ACGT	2 cut(s)	136, 214
HpyCH4V	TGCA	3 cut(s)	74, 212, 450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	224, 413
HpySE526I	ACGT	2 cut(s)	136, 214
Hsp92II	CATG	3 cut(s)	256, 354, 580
Kzo9I	GATC	1 cut(s)	526
LpnPI	CCDG	6 cut(s)	30, 135, 178, 373, 528, 555
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	2 cut(s)	136, 214
MaeIII	GTNAC	2 cut(s)	263, 358
MalI	GATC	1 cut(s)	528
MboI	GATC	1 cut(s)	526
MboII	GAAGA	2 cut(s)	40, 166
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	2 cut(s)	110, 184
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	7 cut(s)	100, 119, 223, 227, 230, 324, 413
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	123, 543
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	526
NlaIII	CATG	3 cut(s)	256, 354, 580
NspI	RCATGY	1 cut(s)	256
PciI	ACATGT	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	85, 347
Ppu21I	YACGTR	2 cut(s)	137, 215
PscI	ACATGT	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	526
ScrFI	CCNGG	2 cut(s)	123, 543
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	110, 184
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	121, 541
TaaI	ACNGT	2 cut(s)	78, 436
TaiI	ACGT	2 cut(s)	139, 217
TaqI	TCGA	1 cut(s)	405
TasI	AATT	2 cut(s)	110, 184
TfiI	GAWTC	2 cut(s)	85, 347
TscAI	CASTG	3 cut(s)	30, 326, 441
TspDTI	ATGAA	3 cut(s)	47, 57, 233
TspRI	CASTG	3 cut(s)	30, 326, 441
XceI	RCATGY	1 cut(s)	256
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.