Rh2AG353600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002876
Physical Location & Seq
Reverse (-)
52263005 .. 52264891
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG353600.1

Sequence Viewer

Length: 1050 bp
ATGGCTTCAGGAAGTGGATCACACTGTCCAATGCAGTTGGGAAGGCAGCCGTGTTTCATCCAAGTTGTGAGGAGCCCGTCAAAGAACACGGAGAGTTTGGTCATCCCTCCTCCATTTGTGATAGAGTTCATGAATGGTGACAGATGCCGGCAGGGACAGATAAAGCTGGAAGGATTGGAACAGTGCCAGTGGCGGGTTGAAATAAATACGGATGGGAGGGGAGTTGAATTGGGTGAAGGGAGATATGGCCGGTCAGGAGCTCTGATGGTGACGGCACCAAGGGGGAGACAGACAGAGGGGACACCACGTGGAGTTTGGGGCATTTATCCATCATTTGCACAGTTGGTTATTCCAGGTGGAATGAACAGCGAAGTACTGGAAATACCAGCAAGGATCTTTTGTGGAGGGTCAAGTCGAACCACGATTGAAAGTAAGGTTTGGTTGAATAATATGAATTGGGGGATGTCGTGCAATGCACGTATCAAGGTAAGTGAGGATGTAGGAGTCATAAAAGGAGGTTGGGACAGGTGGGTGAGTGCAAACATTGTAAGGGTATGCAAGTGGTGCATTGTGGATTATAATCGTTCAAAAAATGAGGCAACTGTGATGGCGTTTTTGCAATGTGGAGGGGTGATGTCGAACGTGGCAATGATGAATGCCGTAACAATCAGTGATGCAATGTACGTTGATAGTTGTGATGAAGAATATCCAGAGGATTCAGAGGAAGAGGAGGAAGATCTGCCTGATGAAGGAGAAGCTGGTCATATGGTACAGTTTCCAATACCTCAAACTGTGATCCGAGTTGGAAAAAAATATGGGCAACTTCCCACAGAGTATGCAAAGCAATATTTCCCGGGTGTCGGTAGTCGTCAGGTTGTTGTGAGGACTGGAGATGGACAATCATGGGAGGTTTCATTTTTGAAGTCAAATGAAACATATAGGTTCAGCGGAGGGTTTGTGGAACTAAGGAAAGGATATGGGCTGAAGGTGGGAAACAAATGCAAGGTTTCGTACCAAGGAAACTGGGTTTTTGTGATGGAGAAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

38.81

Weight (kDa)

5.94

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 275 - 341 7.5e-06 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 579
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 2 cut(s) 193, 948
AclWI GGATC 3 cut(s) 25, 401, 790
AcoI YGGCCR 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 1004
AcvI CACGTG 1 cut(s) 308
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 4 cut(s) 375, 683, 771, 1013
AfiI CCNNNNNNNGG 3 cut(s) 193, 749, 860
AgsI TTSAA 6 cut(s) 200, 227, 428, 445, 588, 922
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 3 cut(s) 166, 260, 758
AluI AGCT 3 cut(s) 166, 260, 758
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 3 cut(s) 25, 401, 790
Ama87I CYCGRG 1 cut(s) 853
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 46
AsuC2I CCSGG 2 cut(s) 854, 855
AsuHPI GGTGA 5 cut(s) 149, 245, 280, 544, 643
AvaI CYCGRG 1 cut(s) 853
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 2 cut(s) 77, 262
BbrPI CACGTG 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 58
BccI CCATC 6 cut(s) 206, 259, 337, 601, 887, 1030
BceAI ACGGC 3 cut(s) 34, 288, 644
BciT130I CCWGG 1 cut(s) 354
BcnI CCSGG 2 cut(s) 854, 855
BcoDI GTCTC 1 cut(s) 280
BglII AGATCT 1 cut(s) 736
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
BmcAI AGTACT 1 cut(s) 375
Bme1390I CCNGG 3 cut(s) 354, 854, 855
BmeT110I CYCGRG 1 cut(s) 853
BmiI GGNNCC 2 cut(s) 74, 276
BmrFI CCNGG 3 cut(s) 354, 854, 855
BmrI ACTGGG 1 cut(s) 1033
BmsI GCATC 2 cut(s) 134, 664
BmuI ACTGGG 1 cut(s) 1033
BpmI CTGGAG 1 cut(s) 909
BpuMI CCSGG 2 cut(s) 854, 855
BsaAI YACGTR 2 cut(s) 308, 479
BsaBI GATNNNNATC 1 cut(s) 579
BsaJI CCNNGG 3 cut(s) 278, 853, 1015
BsaXI ACNNNNNCTCC 3 cut(s) 942, 972, 1031
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 749, 860
Bse118I RCCGGY 2 cut(s) 147, 249
Bse1I ACTGG 4 cut(s) 187, 381, 892, 1028
Bse3DI GCAATG 4 cut(s) 478, 626, 654, 684
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 3 cut(s) 278, 853, 1015
BseGI GGATG 5 cut(s) 57, 102, 217, 468, 502
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 3 cut(s) 193, 749, 860
BseMI GCAATG 4 cut(s) 478, 626, 654, 684
BseNI ACTGG 4 cut(s) 187, 381, 892, 1028
BseRI GAGGAG 3 cut(s) 85, 99, 743
BseXI GCAGC 1 cut(s) 58
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 853
BsiSI CCGG 3 cut(s) 148, 250, 854
BslFI GGGAC 3 cut(s) 168, 313, 536
BslI CCNNNNNNNGG 3 cut(s) 193, 749, 860
BsmAI GTCTC 1 cut(s) 280
BsmFI GGGAC 3 cut(s) 168, 313, 536
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 853
Bsp1286I GDGCHC 2 cut(s) 77, 262
Bsp143I GATC 4 cut(s) 17, 393, 736, 795
BspACI CCGC 2 cut(s) 193, 948
BspANI GGCC 1 cut(s) 249
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 74, 276
BspPI GGATC 3 cut(s) 25, 401, 790
BspT107I GGYRCC 1 cut(s) 274
BsrDI GCAATG 4 cut(s) 478, 626, 654, 684
BsrFI RCCGGY 2 cut(s) 147, 249
BsrI ACTGG 4 cut(s) 187, 381, 892, 1028
BssAI RCCGGY 2 cut(s) 147, 249
BssECI CCNNGG 3 cut(s) 278, 853, 1015
BssMI GATC 4 cut(s) 17, 393, 736, 795
BssT1I CCWWGG 2 cut(s) 278, 1015
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 6 cut(s) 26, 183, 342, 604, 774, 793
Bst6I CTCTTC 1 cut(s) 720
BstAPI GCANNNNNTGC 1 cut(s) 564
BstBAI YACGTR 2 cut(s) 308, 479
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 965
BstENI CCTNNNNNAGG 1 cut(s) 747
BstF5I GGATG 5 cut(s) 57, 102, 217, 468, 502
BstKTI GATC 4 cut(s) 20, 396, 739, 798
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 4 cut(s) 17, 393, 736, 795
BstMWI GCNNNNNNNGC 1 cut(s) 564
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 3 cut(s) 352, 852, 853
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 2 cut(s) 393, 736
BstYI RGATCY 2 cut(s) 393, 736
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 5 cut(s) 57, 102, 217, 468, 502
BtsIMutI CAGTG 4 cut(s) 22, 188, 194, 676
Cac8I GCNNGC 1 cut(s) 149
CciI TCATGA 1 cut(s) 129
Cfr10I RCCGGY 2 cut(s) 147, 249
Cfr9I CCCGGG 1 cut(s) 853
Csp6I GTAC 4 cut(s) 374, 682, 770, 1012
CviAII CATG 2 cut(s) 130, 903
CviJI RGCY 8 cut(s) 5, 49, 75, 166, 249, 260, 758, 982
CviKI_1 RGCY 8 cut(s) 5, 49, 75, 166, 249, 260, 758, 982
CviQI GTAC 4 cut(s) 374, 682, 770, 1012
DdeI CTNAG 1 cut(s) 965
DpnI GATC 4 cut(s) 19, 395, 738, 797
DpnII GATC 4 cut(s) 17, 393, 736, 795
DraIII CACNNNGTG 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 720
EarI CTCTTC 1 cut(s) 720
Ecl136II GAGCTC 1 cut(s) 260
Eco130I CCWWGG 2 cut(s) 278, 1015
Eco24I GRGCYC 2 cut(s) 77, 262
Eco53kI GAGCTC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 1004
Eco72I CACGTG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 853
EcoICRI GAGCTC 1 cut(s) 260
EcoNI CCTNNNNNAGG 1 cut(s) 747
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 278, 1015
EcoT38I GRGCYC 2 cut(s) 77, 262
ErhI CCWWGG 2 cut(s) 278, 1015
FaeI CATG 2 cut(s) 133, 906
FaqI GGGAC 3 cut(s) 168, 313, 536
FatI CATG 2 cut(s) 129, 902
FauI CCCGC 1 cut(s) 186
FauNDI CATATG 1 cut(s) 765
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 5 cut(s) 44, 89, 224, 475, 509
FriOI GRGCYC 2 cut(s) 77, 262
Fsp4HI GCNGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 1 cut(s) 249
HapII CCGG 3 cut(s) 148, 250, 854
Hin1II CATG 2 cut(s) 133, 906
HinfI GANTC 2 cut(s) 504, 716
HpaII CCGG 3 cut(s) 148, 250, 854
HphI GGTGA 5 cut(s) 149, 245, 280, 544, 643
Hpy188I TCNGA 3 cut(s) 264, 721, 800
Hpy188III TCNNGA 4 cut(s) 9, 130, 255, 710
HpyAV CCTTC 5 cut(s) 36, 164, 230, 743, 979
HpyCH4III ACNGT 6 cut(s) 26, 183, 342, 604, 774, 793
HpyCH4IV ACGT 4 cut(s) 307, 478, 642, 684
HpyF10VI GCNNNNNNNGC 1 cut(s) 564
HpyF3I CTNAG 1 cut(s) 965
HpySE526I ACGT 4 cut(s) 307, 478, 642, 684
Hsp92II CATG 2 cut(s) 133, 906
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Kzo9I GATC 4 cut(s) 17, 393, 736, 795
LmnI GCTCC 2 cut(s) 72, 257
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 134, 664
MaeII ACGT 4 cut(s) 307, 478, 642, 684
MaeIII GTNAC 3 cut(s) 137, 268, 661
MalI GATC 4 cut(s) 19, 395, 738, 797
MboI GATC 4 cut(s) 17, 393, 736, 795
MboII GAAGA 3 cut(s) 713, 737, 746
MflI RGATCY 2 cut(s) 393, 736
MhlI GDGCHC 2 cut(s) 77, 262
MluCI AATT 2 cut(s) 227, 454
MlyI GAGTC 1 cut(s) 513
MmeI TCCRAC 1 cut(s) 784
MroNI GCCGGC 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 948
MspI CCGG 3 cut(s) 148, 250, 854
MspR9I CCNGG 3 cut(s) 354, 854, 855
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 564
NaeI GCCGGC 1 cut(s) 149
NciI CCSGG 2 cut(s) 854, 855
NdeI CATATG 1 cut(s) 765
NdeII GATC 4 cut(s) 17, 393, 736, 795
NgoMIV GCCGGC 1 cut(s) 147
NlaIII CATG 2 cut(s) 133, 906
NlaIV GGNNCC 2 cut(s) 74, 276
NmuCI GTSAC 2 cut(s) 137, 268
PagI TCATGA 1 cut(s) 129
PctI GAATGC 1 cut(s) 661
PdiI GCCGGC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 716
PkrI GCNGC 1 cut(s) 48
PleI GAGTC 1 cut(s) 512
PmaCI CACGTG 1 cut(s) 308
PmlI CACGTG 1 cut(s) 308
PpsI GAGTC 1 cut(s) 512
Ppu21I YACGTR 2 cut(s) 308, 479
PsiI TTATAA 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 352
PspCI CACGTG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 74, 276
PsuI RGATCY 2 cut(s) 393, 736
RsaI GTAC 4 cut(s) 375, 683, 771, 1013
RsaNI GTAC 4 cut(s) 374, 682, 770, 1012
SacI GAGCTC 1 cut(s) 262
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 4 cut(s) 17, 393, 736, 795
ScaI AGTACT 1 cut(s) 375
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 3 cut(s) 354, 854, 855
SduI GDGCHC 2 cut(s) 77, 262
SfaNI GCATC 2 cut(s) 134, 664
SmaI CCCGGG 1 cut(s) 855
Sse9I AATT 2 cut(s) 227, 454
SsiI CCGC 2 cut(s) 193, 948
SspI AATATT 1 cut(s) 848
SstI GAGCTC 1 cut(s) 262
StyD4I CCNGG 3 cut(s) 352, 852, 853
StyI CCWWGG 2 cut(s) 278, 1015
TaaI ACNGT 6 cut(s) 26, 183, 342, 604, 774, 793
TaiI ACGT 4 cut(s) 310, 481, 645, 687
TaqI TCGA 2 cut(s) 415, 638
TasI AATT 2 cut(s) 227, 454
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 1 cut(s) 716
TscAI CASTG 4 cut(s) 29, 188, 194, 676
TseFI GTSAC 2 cut(s) 137, 268
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 2 cut(s) 137, 268
TspGWI ACGGA 2 cut(s) 104, 224
TspMI CCCGGG 1 cut(s) 853
TspRI CASTG 4 cut(s) 29, 188, 194, 676
XagI CCTNNNNNAGG 1 cut(s) 747
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
XmaI CCCGGG 1 cut(s) 853
ZrmI AGTACT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.