Rh1CG040300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002876
Physical Location & Seq
Reverse (-)
7561577 .. 7562108
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG040300.1

Sequence Viewer

Length: 357 bp
ATGAGAGGGCCTCCTAAACGGACTCTTGAGAGTGGAACACCGGTGAGGATAGCTAAGGTTGGTCCGACATTTGCACGGTATGTAGTGCAGGGTTCCCGGAACGGCACTGATTTGGCTGTGCCAGAGGACATTATATCAGCCATTTCTGCTCGACATCATCACCTAATTTCACTACGCCTGAAGGGCAAAGTTGACCTATGGGGTGGGTCAATTGTGGTAGCTGGTAATGGAGGTTACATAATGGGTTGGGAACGCTTTGTTAATATGTACTTTAGCAGGGAGGATTACAAGTTACCATCCAAGTGGTGCATACTAGATTTGAATAATGTCGAGTTCCATGTAACGACGTTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.2

Weight (kDa)

9.66

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 269
AgeI ACCGGT 1 cut(s) 40
AgsI TTSAA 1 cut(s) 322
AluBI AGCT 3 cut(s) 53, 221, 354
AluI AGCT 3 cut(s) 53, 221, 354
AoxI GGCC 1 cut(s) 8
AsiGI ACCGGT 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 8, 62
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 55, 152
AvaII GGWCC 1 cut(s) 62
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 118
BcnI CCSGG 1 cut(s) 97
BfaI CTAG 1 cut(s) 314
BglI GCCNNNNNGGC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 8, 62
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 97
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 40
BseGI GGATG 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 107
BshFI GGCC 1 cut(s) 10
BshTI ACCGGT 1 cut(s) 40
BsiSI CCGG 2 cut(s) 41, 97
BsnI GGCC 1 cut(s) 10
BspANI GGCC 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 296
BstMWI GCNNNNNNNGC 2 cut(s) 146, 183
BstSCI CCNGG 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 303
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 8, 62
Csp6I GTAC 1 cut(s) 268
CspAI ACCGGT 1 cut(s) 40
CviAII CATG 1 cut(s) 338
CviJI RGCY 6 cut(s) 10, 53, 116, 140, 221, 354
CviKI_1 RGCY 6 cut(s) 10, 53, 116, 140, 221, 354
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 8
FaeI CATG 1 cut(s) 341
FaiI YATR 7 cut(s) 81, 134, 199, 239, 266, 311, 339
FatI CATG 1 cut(s) 337
FokI GGATG 1 cut(s) 283
FspBI CTAG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 10
HapII CCGG 2 cut(s) 41, 97
Hin1II CATG 1 cut(s) 341
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 1 cut(s) 22
HpaII CCGG 2 cut(s) 41, 97
HphI GGTGA 2 cut(s) 55, 152
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 3 cut(s) 74, 88, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 183
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 1 cut(s) 341
LpnPI CCDG 7 cut(s) 54, 74, 110, 135, 191, 207, 262
MaeI CTAG 1 cut(s) 314
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 3 cut(s) 233, 291, 340
MfeI CAATTG 1 cut(s) 210
MluCI AATT 2 cut(s) 165, 210
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 5 cut(s) 21, 39, 118, 224, 274
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 301
MspI CCGG 2 cut(s) 41, 97
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 146, 183
NciI CCSGG 1 cut(s) 97
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 40
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 2 cut(s) 8, 62
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 301
SaqAI TTAA 1 cut(s) 261
Sau96I GGNCC 2 cut(s) 8, 62
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 97
SetI ASST 8 cut(s) 55, 60, 165, 198, 223, 235, 350, 356
SgrAI CRCCGGYG 1 cut(s) 40
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 2 cut(s) 165, 210
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 350
TaqI TCGA 2 cut(s) 151, 330
TasI AATT 2 cut(s) 165, 210
TatI WGTACW 1 cut(s) 267
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 112
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 62
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.