Rh7DG362800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002876
Physical Location & Seq
Reverse (-)
48321999 .. 48324246
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG362800.1

Sequence Viewer

Length: 966 bp
ATGACGGCGGCAGTCGCTATATGTGACAACCAATTTCCAACCCAGCCTCTAATTCACGAAGCCCAGCGGTCGCTATCGCTCACTGCCAATTTCGAACTGAGCATCTCTCTGTACCTACCTTTCAGATATGGCGGAGCTGATGATGCCGTGTCCACACCACAGCTGGGAAATGATGCATGTTTCCTCCAACTGGTGAGGAAATCGGAGAAGAACTGTGATACATTGGAAATACTGAACCCATTTGTCCAGCGTTTCATGAGCACAGACAAAAGTCCACGAGCTGAAATAAGACTGGGGGGATTTGAAAGATACGTAACCTGGTTCATAGCTATAGACAGGGAAGGGAGTATGAAGTTTTGTGTGAGGAGATATGAACGCAGTGGTGATCTCATGAGAGGGCCTCCTAGACGGACTTTTGACAGTGGAACACCGATGAGGTTCGCTAAGGTTGGTCTGACATTTGCACGATATGTAGTGCAGGGTTCCCGCAACGGCACTGATTTGCCTGTGCCAGAGGACGTTATATCAGCCATCTCTGCTCGGCATCATCACCTAATTTCACTGTGGCTGAAGGGAAAAATAGACCTATGGGGTGGCTCAATTGTGGTAGCTGCTAATGGAGCTTACGTAATGGGTTGGGAACACTTTGTTAATATGTACTTTAGCAGGGAGGATTACAAGTTACCATCCAAGTGGTGCATACTAGATCTGAAGAATGTTGAGTCCCATGTGACGGCATTTAGCCAATCCGGAGGGCTGATTACTGATTATGAGTATGAGACGGCAAGGAATAATCTTGATCCAATGTACGTGGACAATCCCTTCAGATATTATATGTATGGAGGGGAAAATAGGAAGTCGGACAGTGTTGACCCTATTCCGAGTGAAAATGAGGACGAGACAGTTGAGCAGTTGGCAGATGCGACAAATGGGGGAAGGAGTAATAAGGGAAGTACATTGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

36.29

Weight (kDa)

5.76

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 749
AciI CCGC 4 cut(s) 8, 67, 132, 487
AclWI GGATC 1 cut(s) 794
AcuI CTGAAG 3 cut(s) 590, 731, 808
AfaI GTAC 4 cut(s) 113, 659, 809, 955
AfiI CCNNNNNNNGG 3 cut(s) 164, 190, 733
AgsI TTSAA 1 cut(s) 305
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 6 cut(s) 137, 163, 281, 329, 611, 623
AluI AGCT 6 cut(s) 137, 163, 281, 329, 611, 623
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 2 cut(s) 773, 893
AlwI GGATC 1 cut(s) 794
Aor13HI TCCGGA 1 cut(s) 749
AoxI GGCC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 3 cut(s) 205, 395, 542
AsuII TTCGAA 1 cut(s) 93
BauI CACGAG 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 598
BccI CCATC 2 cut(s) 539, 694
BceAI ACGGC 5 cut(s) 21, 131, 508, 750, 798
BciT130I CCWGG 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 773, 893
BfaI CTAG 2 cut(s) 405, 704
BfmI CTRYAG 1 cut(s) 330
BglII AGATCT 1 cut(s) 706
BisI GCNGC 2 cut(s) 9, 612
BlsI GCNGC 2 cut(s) 10, 613
Bme1390I CCNGG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 1 cut(s) 319
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 5 cut(s) 111, 133, 163, 553, 910
BmuI ACTGGG 1 cut(s) 302
BoxI GACNNNNGTC 1 cut(s) 270
BplI GAGNNNNNCTC 4 cut(s) 91, 123, 385, 417
Bpu10I CCTNAGC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 93
BsaAI YACGTR 3 cut(s) 313, 628, 811
BsaWI WCCGGW 1 cut(s) 749
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 190, 733
Bse1I ACTGG 2 cut(s) 195, 297
BseAI TCCGGA 1 cut(s) 749
BseBI CCWGG 1 cut(s) 319
BseGI GGATG 1 cut(s) 686
BseLI CCNNNNNNNGG 3 cut(s) 164, 190, 733
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 195, 297
BseRI GAGGAG 1 cut(s) 379
BseXI GCAGC 1 cut(s) 598
BseYI CCCAGC 3 cut(s) 42, 63, 163
BsgI GTGCAG 1 cut(s) 497
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 400
BsiEI CGRYCG 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 263
BsiSI CCGG 1 cut(s) 750
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 3 cut(s) 164, 190, 733
BsmAI GTCTC 2 cut(s) 773, 893
BsmBI CGTCTC 1 cut(s) 773
BsmFI GGGAC 1 cut(s) 709
BsnI GGCC 1 cut(s) 400
Bsp119I TTCGAA 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 263
Bsp13I TCCGGA 1 cut(s) 749
Bsp143I GATC 3 cut(s) 385, 706, 799
BspACI CCGC 4 cut(s) 8, 67, 132, 487
BspANI GGCC 1 cut(s) 400
BspCNI CTCAG 1 cut(s) 90
BspEI TCCGGA 1 cut(s) 749
BspHI TCATGA 2 cut(s) 255, 390
BspLI GGNNCC 1 cut(s) 484
BspPI GGATC 1 cut(s) 794
BspT104I TTCGAA 1 cut(s) 93
BsrI ACTGG 2 cut(s) 195, 297
BssMI GATC 3 cut(s) 385, 706, 799
BssSI CACGAG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 5 cut(s) 215, 422, 564, 866, 904
BstBAI YACGTR 3 cut(s) 313, 628, 811
BstBI TTCGAA 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 98, 444
BstF5I GGATG 1 cut(s) 686
BstKTI GATC 3 cut(s) 388, 709, 802
BstMAI GTCTC 2 cut(s) 773, 893
BstMBI GATC 3 cut(s) 385, 706, 799
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 4 cut(s) 14, 143, 536, 620
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 1 cut(s) 180
BstPAI GACNNNNGTC 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 330
BstSNI TACGTA 2 cut(s) 313, 628
BstV1I GCAGC 1 cut(s) 598
BstX2I RGATCY 1 cut(s) 706
BstXI CCANNNNNNTGG 1 cut(s) 693
BstYI RGATCY 1 cut(s) 706
BsuRI GGCC 1 cut(s) 400
BtsCI GGATG 1 cut(s) 686
BtsI GCAGTG 2 cut(s) 81, 385
BtsIMutI CAGTG 6 cut(s) 81, 385, 427, 495, 560, 871
CciI TCATGA 2 cut(s) 255, 390
Cfr13I GGNCC 1 cut(s) 398
CsiI ACCWGGT 1 cut(s) 317
Csp6I GTAC 4 cut(s) 112, 658, 808, 954
CspCI CAANNNNNGTGG 2 cut(s) 792, 827
CviAII CATG 4 cut(s) 177, 256, 391, 728
CviQI GTAC 4 cut(s) 112, 658, 808, 954
DdeI CTNAG 2 cut(s) 98, 444
DpnI GATC 3 cut(s) 387, 708, 801
DpnII GATC 3 cut(s) 385, 706, 799
EciI GGCGGA 1 cut(s) 147
Eco105I TACGTA 2 cut(s) 313, 628
Eco57I CTGAAG 3 cut(s) 590, 731, 808
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 317
EcoT22I ATGCAT 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 773
FaeI CATG 4 cut(s) 180, 259, 394, 731
FaqI GGGAC 1 cut(s) 709
FatI CATG 4 cut(s) 176, 255, 390, 727
FauI CCCGC 1 cut(s) 494
Fnu4HI GCNGC 2 cut(s) 9, 612
FokI GGATG 1 cut(s) 673
Fsp4HI GCNGC 2 cut(s) 9, 612
FspBI CTAG 2 cut(s) 405, 704
GluI GCNGC 2 cut(s) 9, 612
GsaI CCCAGC 3 cut(s) 46, 67, 167
HaeIII GGCC 1 cut(s) 400
HapII CCGG 1 cut(s) 750
Hin1II CATG 4 cut(s) 180, 259, 394, 731
HincII GTYRAC 1 cut(s) 871
HindII GTYRAC 1 cut(s) 871
HinfI GANTC 1 cut(s) 722
HpaII CCGG 1 cut(s) 750
HphI GGTGA 3 cut(s) 205, 395, 542
Hpy166II GTNNAC 4 cut(s) 153, 275, 814, 871
Hpy188I TCNGA 7 cut(s) 125, 205, 456, 711, 827, 862, 882
Hpy188III TCNNGA 5 cut(s) 56, 256, 391, 750, 797
Hpy8I GTNNAC 4 cut(s) 153, 275, 814, 871
HpyAV CCTTC 4 cut(s) 335, 565, 832, 930
HpyCH4III ACNGT 5 cut(s) 215, 422, 564, 866, 904
HpyCH4IV ACGT 4 cut(s) 312, 519, 627, 810
HpyCH4V TGCA 4 cut(s) 176, 464, 478, 699
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 143, 536, 620
HpyF3I CTNAG 2 cut(s) 98, 444
HpySE526I ACGT 4 cut(s) 312, 519, 627, 810
Hsp92II CATG 4 cut(s) 180, 259, 394, 731
Kpn2I TCCGGA 1 cut(s) 749
Kzo9I GATC 3 cut(s) 385, 706, 799
LmnI GCTCC 2 cut(s) 134, 620
Lsp1109I GCAGC 1 cut(s) 598
LweI GCATC 5 cut(s) 111, 133, 163, 553, 910
MabI ACCWGGT 1 cut(s) 317
MaeI CTAG 2 cut(s) 405, 704
MaeII ACGT 4 cut(s) 312, 519, 627, 810
MaeIII GTNAC 4 cut(s) 23, 313, 681, 730
MalI GATC 3 cut(s) 387, 708, 801
MboI GATC 3 cut(s) 385, 706, 799
MboII GAAGA 2 cut(s) 220, 724
MfeI CAATTG 1 cut(s) 600
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 5 cut(s) 32, 51, 88, 555, 600
MlyI GAGTC 1 cut(s) 731
MmeI TCCRAC 3 cut(s) 62, 211, 840
Mph1103I ATGCAT 1 cut(s) 178
MroI TCCGGA 1 cut(s) 749
MseI TTAA 1 cut(s) 651
MslI CAYNNNNRTG 1 cut(s) 691
MspA1I CMGCKG 2 cut(s) 67, 163
MspI CCGG 1 cut(s) 750
MspR9I CCNGG 1 cut(s) 319
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 4 cut(s) 14, 143, 536, 620
NdeII GATC 3 cut(s) 385, 706, 799
NlaIII CATG 4 cut(s) 180, 259, 394, 731
NlaIV GGNNCC 1 cut(s) 484
NmeAIII GCCGAG 1 cut(s) 520
NmuCI GTSAC 2 cut(s) 23, 730
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 180
NspV TTCGAA 1 cut(s) 93
PagI TCATGA 2 cut(s) 255, 390
PkrI GCNGC 2 cut(s) 10, 613
PleI GAGTC 1 cut(s) 730
PpsI GAGTC 1 cut(s) 730
Ppu21I YACGTR 3 cut(s) 313, 628, 811
PshAI GACNNNNGTC 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 317
PspFI CCCAGC 3 cut(s) 42, 63, 163
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 484
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 1 cut(s) 706
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 4 cut(s) 113, 659, 809, 955
RsaNI GTAC 4 cut(s) 112, 658, 808, 954
RseI CAYNNNNRTG 1 cut(s) 691
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 2 cut(s) 9, 612
Sau3AI GATC 3 cut(s) 385, 706, 799
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 731
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 1 cut(s) 263
SexAI ACCWGGT 1 cut(s) 317
SfaNI GCATC 5 cut(s) 111, 133, 163, 553, 910
SfcI CTRYAG 1 cut(s) 330
SfuI TTCGAA 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 691
SnaBI TACGTA 2 cut(s) 313, 628
Sse9I AATT 5 cut(s) 32, 51, 88, 555, 600
SsiI CCGC 4 cut(s) 8, 67, 132, 487
SspMI CTAG 2 cut(s) 405, 704
StyD4I CCNGG 1 cut(s) 317
TaaI ACNGT 5 cut(s) 215, 422, 564, 866, 904
TaiI ACGT 4 cut(s) 315, 522, 630, 813
TaqI TCGA 1 cut(s) 93
TasI AATT 5 cut(s) 32, 51, 88, 555, 600
TatI WGTACW 2 cut(s) 657, 953
TauI GCSGC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 6 cut(s) 88, 385, 427, 502, 567, 871
TseFI GTSAC 2 cut(s) 23, 730
TseI GCWGC 1 cut(s) 611
Tsp45I GTSAC 2 cut(s) 23, 730
TspDTI ATGAA 4 cut(s) 244, 313, 365, 387
TspGWI ACGGA 1 cut(s) 424
TspRI CASTG 6 cut(s) 88, 385, 427, 502, 567, 871
XceI RCATGY 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 2 cut(s) 405, 704
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.