Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002876

Physical Location & Seq

Genomic Coordinates Forward (+)

31098212 .. 31100425

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAATGGCGACAGATGCCGCAAAGGGAAAATTACACCGGAGGGGTGCCCCGTACTTCAATGGGTGGTTGAAATAAATACGGATGGTACTGGGGTGGAATTGGGCGATGGCTGGCCGCAATTTATTGCCCAAAATATGACCGAAGGCTGGATGCTAGTGATGTTAAGGTACGAGGGGGCAATGATATTTTCTGCAAGGAGGTATGGCCCTTCGGGAGCGCTGATGGTGGGGACGCCAATGGGGACAATTGTGAAGAAAACATGTGCTTCAGGTGGGGGCGTTTTACCATCATTTGCACGGTTGGTGATTCCCGATGGAGTGAACAGCCAGGAATTGGTAAAGCAAACTTTAATTACAGTCCTCAACTATGTTGTCGGACATACCCCGGGGATATTACGTGGAACAGCAGGTCGGAACAGGATTGACGATAAAATATGGGTGAACAATATGAACTGGGGAATGTCGTGCAACGCACGTATCCAGCTAAGCGAGGAAGGAGGAGTAATAAAAGGAGGTTGGGAAATGTTTGTGAGGGCAAACATTAGCCGGGCATCCAAGTGGTGCATTGTGGATGTAGATCGTTTCAAGCAGGAGACGTACGTTGATAGTGCCGAGGAAGACTACCCCGACACAAATGACAATGATGAGGGAGATGATTCGTCGGATGACGAACAAGATGCCGAGTTGCAACAAAATCCAATCCCAAGTGTTGTGGTCGAGTGGGAGAGAAATATGCGCAACTCCCCACGGGATATGCAAAGAAATATTTCAAGGGTTCGGCGGCGGTTTCGTGGAACTCGGGACAGCATATGGCCTTACGGTGGGAAACAAATGCAAGGTGTCTTATCCGGGAGGCTGGGTGTTCTTCATGGAGAGTCTGTGAGCTTGGTGGCAGTTAAGATGAGATTGGGGAATGGCGATGCTGAAGGAGACATGCATGATCATGTTAACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

35.36

Weight (kDa)

5.41

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313861
rosa_laevigata	RLG00000000965
rosa_multiflora	Rmu_co8273039.1_g000001 Rmu_sc0000931.1_g000012 Rmu_sc0002045.1_g000026 Rmu_sc0003179.1_g000029 Rmu_sc0006198.1_g000015
rosa_roxburghii	Rroxscaffold_1G00068970 Rroxscaffold_1G00068980 Rroxscaffold_1G00068990 Rroxscaffold_2G00129080 Rroxscaffold_2G00129090 Rroxscaffold_4G00309350 Rroxscaffold_7G00162680 Rroxscaffold_7G00162690
rosa_samantha	Rh1AG005200 Rh1AG007200 Rh1AG007300 Rh1CG040300 Rh1CG040400 Rh1DG029100 Rh2AG353600 Rh3BG122100 Rh5AG305400 Rh5CG248700 Rh5CG248900 Rh5CG249000 Rh6BG075500 Rh6BG075600 Rh6CG151700 Rh7DG361800 Rh7DG361900 Rh7DG362800 Rh7DG363700 Rh7DG363800 Rh7DG364100
rosa_wichuraiana	Rw1G000280 Rw1G010450 Rw6G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	737
Acc36I	ACCTGC	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	334
AciI	CCGC	4 cut(s)	19, 116, 781, 784
AcoI	YGGCCR	1 cut(s)	113
AcuI	CTGAAG	2 cut(s)	252, 945
AcyI	GRCGYC	1 cut(s)	233
AfaI	GTAC	4 cut(s)	54, 88, 170, 599
AfeI	AGCGCT	1 cut(s)	219
AfiI	CCNNNNNNNGG	3 cut(s)	147, 334, 821
AflIII	ACRYGT	1 cut(s)	260
AgsI	TTSAA	4 cut(s)	59, 71, 586, 771
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	2 cut(s)	484, 885
AluI	AGCT	2 cut(s)	484, 885
Alw26I	GTCTC	2 cut(s)	587, 924
Ama87I	CYCGRG	2 cut(s)	385, 798
Aor51HI	AGCGCT	1 cut(s)	219
AoxI	GGCC	3 cut(s)	113, 205, 812
Asp700I	GAANNNNTTC	1 cut(s)	766
AspLEI	GCGC	2 cut(s)	220, 738
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	4 cut(s)	386, 387, 548, 850
AsuHPI	GGTGA	2 cut(s)	316, 451
AvaI	CYCGRG	2 cut(s)	385, 798
BaeGI	GKGCMC	1 cut(s)	50
BaeI	ACNNNNGTAYC	4 cut(s)	78, 111, 460, 493
BanI	GGYRCC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	624
BccI	CCATC	5 cut(s)	77, 101, 217, 295, 308
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BciT130I	CCWGG	1 cut(s)	329
BciVI	GTATCC	1 cut(s)	488
BclI	TGATCA	1 cut(s)	940
BcnI	CCSGG	4 cut(s)	386, 387, 548, 850
BcoDI	GTCTC	2 cut(s)	587, 924
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	398
BfuI	GTATCC	1 cut(s)	488
BisI	GCNGC	3 cut(s)	19, 116, 782
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	3 cut(s)	20, 117, 783
Bme1390I	CCNGG	5 cut(s)	329, 386, 387, 548, 850
BmeT110I	CYCGRG	2 cut(s)	385, 798
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	5 cut(s)	329, 386, 387, 548, 850
BmrI	ACTGGG	2 cut(s)	99, 463
BmsI	GCATC	5 cut(s)	5, 141, 560, 667, 910
BmuI	ACTGGG	2 cut(s)	99, 463
BpiI	GAAGAC	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	485
BpuMI	CCSGG	4 cut(s)	386, 387, 548, 850
BsaAI	YACGTR	2 cut(s)	398, 476
BsaBI	GATNNNNATC	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	5 cut(s)	384, 385, 386, 612, 746
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	4 cut(s)	844, 864, 874, 894
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 334, 821
Bse1I	ACTGG	2 cut(s)	94, 458
Bse3DI	GCAATG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	5 cut(s)	384, 385, 386, 612, 746
BseGI	GGATG	5 cut(s)	88, 156, 551, 577, 670
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	3 cut(s)	147, 334, 821
BseMI	GCAATG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	94, 458
BseRI	GAGGAG	1 cut(s)	513
BseSI	GKGCMC	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	856
BshFI	GGCC	3 cut(s)	115, 207, 814
BshNI	GGYRCC	1 cut(s)	45
BsiHKCI	CYCGRG	2 cut(s)	385, 798
BsiSI	CCGG	4 cut(s)	38, 386, 547, 849
BsiWI	CGTACG	1 cut(s)	597
BslFI	GGGAC	3 cut(s)	244, 256, 815
BslI	CCNNNNNNNGG	3 cut(s)	147, 334, 821
BsmAI	GTCTC	2 cut(s)	587, 924
BsmBI	CGTCTC	1 cut(s)	587
BsmFI	GGGAC	3 cut(s)	244, 256, 815
BsnI	GGCC	3 cut(s)	115, 207, 814
BsoBI	CYCGRG	2 cut(s)	385, 798
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	577, 940
Bsp1720I	GCTNAGC	1 cut(s)	485
BspACI	CCGC	4 cut(s)	19, 116, 781, 784
BspANI	GGCC	3 cut(s)	115, 207, 814
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	398
BspT107I	GGYRCC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	94, 458
BssECI	CCNNGG	5 cut(s)	384, 385, 386, 612, 746
BssMI	GATC	2 cut(s)	577, 940
BssNI	GRCGYC	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	300, 358, 821
BstACI	GRCGYC	1 cut(s)	233
BstBAI	YACGTR	2 cut(s)	398, 476
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	485
BstDSI	CCRYGG	1 cut(s)	746
BstF5I	GGATG	5 cut(s)	88, 156, 551, 577, 670
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	2 cut(s)	220, 738
BstKTI	GATC	2 cut(s)	580, 943
BstMAI	GTCTC	2 cut(s)	587, 924
BstMBI	GATC	2 cut(s)	577, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	2 cut(s)	264, 937
BstSCI	CCNGG	5 cut(s)	327, 384, 385, 546, 848
BstSLI	GKGCMC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	624
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	115, 207, 814
BtgI	CCRYGG	1 cut(s)	746
BtgZI	GCGATG	2 cut(s)	120, 933
BtsCI	GGATG	5 cut(s)	88, 156, 551, 577, 670
BveI	ACCTGC	1 cut(s)	398
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	2 cut(s)	220, 738
Cfr13I	GGNCC	1 cut(s)	206
Cfr9I	CCCGGG	1 cut(s)	385
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	4 cut(s)	53, 87, 169, 598
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CviAII	CATG	5 cut(s)	261, 869, 934, 938, 944
CviQI	GTAC	4 cut(s)	53, 87, 169, 598
DdeI	CTNAG	1 cut(s)	485
DpnI	GATC	2 cut(s)	579, 942
DpnII	GATC	2 cut(s)	577, 940
EaeI	YGGCCR	1 cut(s)	113
Eco47III	AGCGCT	1 cut(s)	219
Eco57I	CTGAAG	2 cut(s)	252, 945
Eco88I	CYCGRG	2 cut(s)	385, 798
EcoRII	CCWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	939
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	5 cut(s)	264, 872, 937, 941, 947
FaqI	GGGAC	3 cut(s)	244, 256, 815
FatI	CATG	5 cut(s)	260, 868, 933, 937, 943
FauNDI	CATATG	1 cut(s)	809
FbaI	TGATCA	1 cut(s)	940
Fnu4HI	GCNGC	3 cut(s)	19, 116, 782
FokI	GGATG	5 cut(s)	95, 163, 538, 584, 677
Fsp4HI	GCNGC	3 cut(s)	19, 116, 782
FspBI	CTAG	1 cut(s)	155
FspI	TGCGCA	1 cut(s)	737
GlaI	GCGC	2 cut(s)	219, 737
GluI	GCNGC	3 cut(s)	19, 116, 782
GsaI	CCCAGC	1 cut(s)	860
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	3 cut(s)	115, 207, 814
HapII	CCGG	4 cut(s)	38, 386, 547, 849
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	2 cut(s)	220, 738
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	5 cut(s)	264, 872, 937, 941, 947
Hin6I	GCGC	2 cut(s)	218, 736
HinP1I	GCGC	2 cut(s)	218, 736
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HinfI	GANTC	3 cut(s)	307, 656, 875
HpaI	GTTAAC	1 cut(s)	949
HpaII	CCGG	4 cut(s)	38, 386, 547, 849
HphI	GGTGA	2 cut(s)	316, 451
Hpy166II	GTNNAC	3 cut(s)	322, 442, 949
Hpy188I	TCNGA	3 cut(s)	377, 414, 664
Hpy188III	TCNNGA	3 cut(s)	213, 311, 800
Hpy8I	GTNNAC	3 cut(s)	322, 442, 949
Hpy99I	CGWCG	1 cut(s)	664
HpyAV	CCTTC	4 cut(s)	137, 219, 488, 920
HpyCH4III	ACNGT	3 cut(s)	300, 358, 821
HpyCH4IV	ACGT	4 cut(s)	397, 475, 596, 600
HpyCH4V	TGCA	8 cut(s)	194, 296, 468, 564, 688, 757, 835, 937
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	1 cut(s)	485
HpySE526I	ACGT	4 cut(s)	397, 475, 596, 600
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	5 cut(s)	264, 872, 937, 941, 947
HspAI	GCGC	2 cut(s)	218, 736
Ksp22I	TGATCA	1 cut(s)	940
KspAI	GTTAAC	1 cut(s)	949
Kzo9I	GATC	2 cut(s)	577, 940
LmnI	GCTCC	1 cut(s)	215
LweI	GCATC	5 cut(s)	5, 141, 560, 667, 910
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	4 cut(s)	397, 475, 596, 600
MalI	GATC	2 cut(s)	579, 942
MboI	GATC	2 cut(s)	577, 940
MboII	GAAGA	3 cut(s)	265, 629, 857
MfeI	CAATTG	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	6 cut(s)	30, 98, 119, 246, 332, 351
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	3 cut(s)	355, 392, 642
Mph1103I	ATGCAT	1 cut(s)	939
MroXI	GAANNNNTTC	1 cut(s)	766
MseI	TTAA	4 cut(s)	164, 350, 897, 948
MslI	CAYNNNNRTG	2 cut(s)	556, 942
MspI	CCGG	4 cut(s)	38, 386, 547, 849
MspR9I	CCNGG	5 cut(s)	329, 386, 387, 548, 850
MunI	CAATTG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	15
NciI	CCSGG	4 cut(s)	386, 387, 548, 850
NdeI	CATATG	1 cut(s)	809
NdeII	GATC	2 cut(s)	577, 940
NlaIII	CATG	5 cut(s)	264, 872, 937, 941, 947
NlaIV	GGNNCC	1 cut(s)	47
NmeAIII	GCCGAG	2 cut(s)	637, 706
NsbI	TGCGCA	1 cut(s)	737
NsiI	ATGCAT	1 cut(s)	939
NspI	RCATGY	2 cut(s)	264, 937
PciI	ACATGT	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	766
PfeI	GAWTC	2 cut(s)	307, 656
Pfl23II	CGTACG	1 cut(s)	597
PflMI	CCANNNNNTGG	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	848
PkrI	GCNGC	3 cut(s)	20, 117, 783
PleI	GAGTC	1 cut(s)	883
PpsI	GAGTC	1 cut(s)	883
Ppu21I	YACGTR	2 cut(s)	398, 476
PscI	ACATGT	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	327
PspLI	CGTACG	1 cut(s)	597
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	4 cut(s)	54, 88, 170, 599
RsaNI	GTAC	4 cut(s)	53, 87, 169, 598
RseI	CAYNNNNRTG	2 cut(s)	556, 942
SaqAI	TTAA	4 cut(s)	164, 350, 897, 948
SatI	GCNGC	3 cut(s)	19, 116, 782
Sau3AI	GATC	2 cut(s)	577, 940
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	5 cut(s)	329, 386, 387, 548, 850
SduI	GDGCHC	1 cut(s)	50
SfaNI	GCATC	5 cut(s)	5, 141, 560, 667, 910
SmaI	CCCGGG	1 cut(s)	387
SmiMI	CAYNNNNRTG	2 cut(s)	556, 942
Sse9I	AATT	6 cut(s)	30, 98, 119, 246, 332, 351
SsiI	CCGC	4 cut(s)	19, 116, 781, 784
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	5 cut(s)	327, 384, 385, 546, 848
TaaI	ACNGT	3 cut(s)	300, 358, 821
TaiI	ACGT	4 cut(s)	400, 478, 599, 603
TaqI	TCGA	1 cut(s)	717
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	6 cut(s)	30, 98, 119, 246, 332, 351
TauI	GCSGC	3 cut(s)	21, 118, 784
TfiI	GAWTC	2 cut(s)	307, 656
Tru1I	TTAA	4 cut(s)	164, 350, 897, 948
Tru9I	TTAA	4 cut(s)	164, 350, 897, 948
TspDTI	ATGAA	3 cut(s)	17, 464, 857
TspGWI	ACGGA	1 cut(s)	95
TspMI	CCCGGG	1 cut(s)	385
Van91I	CCANNNNNTGG	1 cut(s)	334
XceI	RCATGY	2 cut(s)	264, 937
XmaI	CCCGGG	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	766
XspI	CTAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.