Rmu_sc0000931.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000931.1
OG0002876
Physical Location & Seq
Forward (+)
70579 .. 72585
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000931.1_g000012.1.cds

Sequence Viewer

Length: 969 bp
atgagtagaagtcacaccacggcatatttctgtcggcagatctgccagtccatcagacgacggagtctgctgcaaaccgtcgactcaatgatcggtatacgacagttgaaaaccgtcatccctcctccatttgtgatagagttcataaatggtgacagatgccggcaaggaaagataaaactagaaggattagaacagtgccagttgcgggttgaaataaatacggatgggaggggagttgaattgggtgaagggtgggcggaatttgtggggaaaaatttggaggacgggtggatgctagtgctgttaaggtatgagggggcaatgactttttcttccaggagatatggccggtcaggagctctgatggtgacagcaccaagggggagacagacaaaggggacaccacgtggagttggggaaataccagcagggatctttcgtggagggtcaagtcgaaccacgattgaaagtaaggtttggttgaataatatgaattgggggatgtcgtgcaatgcatgtatcaaggtaagtgaggatagaggattcataaaaggaggttgggacaggtgggtgagtgaaaacattataagggtatgcaagtggtgcattgtggattataattgttcaaaaaatgaggcaactgtgatggcgtttctgcaaagtggagggttgatgtcgaatgtggcaatgctgaatgccgtaacaatcggtgatgctatgtacattgatagttgtgatgaagaatatccagaggattcagaggaagatgaggaagatctgactgataaaggagaagctggtcatatggttcagcggaggctttgtggaactaaggaaaggatatgggctgaaggtgggaaacaaatgcaaggtttcgtactaaggaaactgggtttttgtgatggagaagatgtaaacttggtggcaagaaacagcactgcaggtgatacagattacagaaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

36.15

Weight (kDa)

6.76

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 590, 621
AarI CACCTGC 1 cut(s) 935
AasI GACNNNNNNGTC 1 cut(s) 63
Acc36I ACCTGC 1 cut(s) 935
AccI GTMKAC 2 cut(s) 81, 97
AciI CCGC 3 cut(s) 208, 260, 817
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 2 cut(s) 263, 277
AcuI CTGAAG 1 cut(s) 873
AcvI CACGTG 1 cut(s) 410
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 2 cut(s) 725, 882
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 6 cut(s) 109, 215, 242, 470, 487, 630
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 2 cut(s) 362, 800
AluI AGCT 2 cut(s) 362, 800
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 443
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 2 cut(s) 263, 277
AsuHPI GGTGA 6 cut(s) 164, 260, 382, 586, 725, 959
BanII GRGCYC 1 cut(s) 364
BbrPI CACGTG 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 57
BccI CCATC 5 cut(s) 59, 221, 361, 643, 899
BceAI ACGGC 2 cut(s) 36, 686
BciT130I CCWGG 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 2 cut(s) 182, 299
BfmI CTRYAG 1 cut(s) 942
BfuAI ACCTGC 1 cut(s) 935
BglII AGATCT 2 cut(s) 39, 778
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 340
BmrI ACTGGG 1 cut(s) 902
BmsI GCATC 3 cut(s) 149, 285, 706
BmuI ACTGGG 1 cut(s) 902
BsaAI YACGTR 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 18, 380
BsaXI ACNNNNNCTCC 6 cut(s) 275, 305, 811, 841, 900, 930
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse118I RCCGGY 2 cut(s) 162, 351
Bse1I ACTGG 3 cut(s) 46, 202, 897
Bse3DI GCAATG 3 cut(s) 330, 520, 696
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 2 cut(s) 18, 380
BseGI GGATG 4 cut(s) 117, 232, 300, 510
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 3 cut(s) 330, 520, 696
BseNI ACTGG 3 cut(s) 46, 202, 897
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 57
BshFI GGCC 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 2 cut(s) 163, 352
BslFI GGGAC 2 cut(s) 415, 578
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 2 cut(s) 415, 578
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 364
Bsp1407I TGTACA 1 cut(s) 723
Bsp143I GATC 4 cut(s) 39, 90, 435, 778
BspACI CCGC 3 cut(s) 208, 260, 817
BspANI GGCC 1 cut(s) 351
BspMAI CTGCAG 1 cut(s) 946
BspMI ACCTGC 1 cut(s) 935
BspPI GGATC 1 cut(s) 443
BsrDI GCAATG 3 cut(s) 330, 520, 696
BsrFI RCCGGY 2 cut(s) 162, 351
BsrGI TGTACA 1 cut(s) 723
BsrI ACTGG 3 cut(s) 46, 202, 897
BssAI RCCGGY 2 cut(s) 162, 351
BssECI CCNNGG 2 cut(s) 18, 380
BssMI GATC 4 cut(s) 39, 90, 435, 778
BssNAI GTATAC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 380
Bst1107I GTATAC 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 5 cut(s) 79, 105, 115, 198, 646
BstAPI GCANNNNNTGC 1 cut(s) 606
BstAUI TGTACA 1 cut(s) 723
BstBAI YACGTR 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 2 cut(s) 834, 884
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 4 cut(s) 117, 232, 300, 510
BstKTI GATC 4 cut(s) 42, 93, 438, 781
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 4 cut(s) 39, 90, 435, 778
BstMWI GCNNNNNNNGC 1 cut(s) 606
BstNI CCWGG 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 338
BstSFI CTRYAG 1 cut(s) 942
BstV1I GCAGC 1 cut(s) 57
BstX2I RGATCY 3 cut(s) 39, 435, 778
BstYI RGATCY 3 cut(s) 39, 435, 778
BstZ17I GTATAC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 4 cut(s) 117, 232, 300, 510
BtsI GCAGTG 1 cut(s) 939
BtsIMutI CAGTG 2 cut(s) 203, 939
BveI ACCTGC 1 cut(s) 935
Cac8I GCNNGC 1 cut(s) 164
Cfr10I RCCGGY 2 cut(s) 162, 351
Csp6I GTAC 2 cut(s) 724, 881
CviAII CATG 1 cut(s) 519
CviJI RGCY 5 cut(s) 351, 362, 800, 823, 851
CviKI_1 RGCY 5 cut(s) 351, 362, 800, 823, 851
CviQI GTAC 2 cut(s) 724, 881
DdeI CTNAG 2 cut(s) 834, 884
DpnI GATC 4 cut(s) 41, 92, 437, 780
DpnII GATC 4 cut(s) 39, 90, 435, 778
DraIII CACNNNGTG 1 cut(s) 410
DrdI GACNNNNNNGTC 1 cut(s) 63
DseDI GACNNNNNNGTC 1 cut(s) 63
EaeI YGGCCR 1 cut(s) 349
EciI GGCGGA 1 cut(s) 275
Ecl136II GAGCTC 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 380
Eco24I GRGCYC 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 873
Eco72I CACGTG 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 380
EcoT22I ATGCAT 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 1 cut(s) 522
FaqI GGGAC 2 cut(s) 415, 578
FatI CATG 1 cut(s) 518
FauI CCCGC 1 cut(s) 201
FauNDI CATATG 1 cut(s) 807
FblI GTMKAC 2 cut(s) 81, 97
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 4 cut(s) 104, 239, 307, 517
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 2 cut(s) 182, 299
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 1 cut(s) 351
HapII CCGG 2 cut(s) 163, 352
Hin1II CATG 1 cut(s) 522
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 4 cut(s) 64, 83, 546, 758
HpaII CCGG 2 cut(s) 163, 352
HphI GGTGA 6 cut(s) 164, 260, 382, 586, 725, 959
Hpy166II GTNNAC 3 cut(s) 82, 98, 919
Hpy188I TCNGA 4 cut(s) 56, 366, 763, 783
Hpy188III TCNNGA 2 cut(s) 357, 752
Hpy8I GTNNAC 3 cut(s) 82, 98, 919
Hpy99I CGWCG 2 cut(s) 63, 83
HpyAV CCTTC 4 cut(s) 179, 245, 848, 957
HpyCH4III ACNGT 5 cut(s) 79, 105, 115, 198, 646
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 8 cut(s) 73, 513, 518, 600, 609, 661, 871, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 606
HpyF3I CTNAG 2 cut(s) 834, 884
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 1 cut(s) 522
KroI GCCGGC 1 cut(s) 162
KroNI GCCGGC 1 cut(s) 164
Kzo9I GATC 4 cut(s) 39, 90, 435, 778
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 3 cut(s) 149, 285, 706
MaeI CTAG 2 cut(s) 182, 299
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 4 cut(s) 11, 152, 370, 703
MalI GATC 4 cut(s) 41, 92, 437, 780
MboI GATC 4 cut(s) 39, 90, 435, 778
MboII GAAGA 5 cut(s) 327, 755, 779, 788, 923
MflI RGATCY 3 cut(s) 39, 435, 778
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 5 cut(s) 242, 263, 277, 496, 622
MlyI GAGTC 2 cut(s) 73, 77
Mph1103I ATGCAT 1 cut(s) 520
MroNI GCCGGC 1 cut(s) 162
MseI TTAA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 817
MspI CCGG 2 cut(s) 163, 352
MspR9I CCNGG 1 cut(s) 340
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 606
NaeI GCCGGC 1 cut(s) 164
NdeI CATATG 1 cut(s) 807
NdeII GATC 4 cut(s) 39, 90, 435, 778
NgoMIV GCCGGC 1 cut(s) 162
NlaIII CATG 1 cut(s) 522
NmuCI GTSAC 3 cut(s) 11, 152, 370
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 522
PaqCI CACCTGC 1 cut(s) 935
PctI GAATGC 1 cut(s) 703
PdiI GCCGGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 546, 758
PflFI GACNNNGTC 1 cut(s) 63
PfoI TCCNGGA 1 cut(s) 338
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 2 cut(s) 72, 77
PmaCI CACGTG 1 cut(s) 410
PmlI CACGTG 1 cut(s) 410
PpsI GAGTC 2 cut(s) 72, 77
Ppu21I YACGTR 1 cut(s) 410
PsiI TTATAA 2 cut(s) 590, 621
Psp124BI GAGCTC 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 338
PspCI CACGTG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 338
PstI CTGCAG 1 cut(s) 946
PsuI RGATCY 3 cut(s) 39, 435, 778
PsyI GACNNNGTC 1 cut(s) 63
RsaI GTAC 2 cut(s) 725, 882
RsaNI GTAC 2 cut(s) 724, 881
SacI GAGCTC 1 cut(s) 364
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 4 cut(s) 39, 90, 435, 778
SchI GAGTC 2 cut(s) 73, 77
ScrFI CCNGG 1 cut(s) 340
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 3 cut(s) 149, 285, 706
SfcI CTRYAG 1 cut(s) 942
Sse9I AATT 5 cut(s) 242, 263, 277, 496, 622
SsiI CCGC 3 cut(s) 208, 260, 817
SspMI CTAG 2 cut(s) 182, 299
SstI GAGCTC 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 5 cut(s) 79, 105, 115, 198, 646
TaiI ACGT 1 cut(s) 412
TaqI TCGA 3 cut(s) 81, 457, 680
TasI AATT 5 cut(s) 242, 263, 277, 496, 622
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 2 cut(s) 546, 758
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 2 cut(s) 203, 946
TseFI GTSAC 3 cut(s) 11, 152, 370
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 3 cut(s) 11, 152, 370
TspDTI ATGAA 4 cut(s) 133, 509, 538, 756
TspGWI ACGGA 2 cut(s) 76, 239
TspRI CASTG 2 cut(s) 203, 946
Tth111I GACNNNGTC 1 cut(s) 63
XapI RAATTY 2 cut(s) 263, 277
XceI RCATGY 1 cut(s) 522
XmiI GTMKAC 2 cut(s) 81, 97
XspI CTAG 2 cut(s) 182, 299
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.