Rroxscaffold_2G00129080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002876
Physical Location & Seq
Forward (+)
64914824 .. 64915368
545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129080.1

Sequence Viewer

Length: 333 bp
ATGGCCCTTCAGAGCGCTGATGGTGGGGACGCCAATGGGGACAATTGTGAAGAAAACATGTGCTTCTGTGGGGGCGTTTTACCATCATTTGCACGGTTGGTGATTCCCGATGGAGTGAACAGCCAGGAATTGAAAATATGGGTGAACAATATGAATCGGGGAATGTCGTGCAACGCACGTATCCAGCTAAGCGAGGAAGGAGGAGTAATAAAAGGAGGTTGGGAAATGTTTGTGAGGGCAAACATTAGCCGGGCATCCAAGTGGTGCATTGTGGATGTAGATCGTTTCAAGCAGGAGGTAAGAGTGATGGCATTTGTGCAATGCGGGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.04

Weight (kDa)

5.04

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 30
AfeI AGCGCT 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 2 cut(s) 133, 289
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 112, 154
BaeI ACNNNNGTAYC 2 cut(s) 163, 196
BccI CCATC 4 cut(s) 14, 91, 104, 301
BciT130I CCWGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 191
BcnI CCSGG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 191
BlpI GCTNAGC 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 125, 251
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 2 cut(s) 125, 251
BmsI GCATC 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 326
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 254, 280
BseJI GATNNNNATC 1 cut(s) 279
BseMI GCAATG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 250
BslFI GGGAC 2 cut(s) 41, 53
BsmFI GGGAC 2 cut(s) 41, 53
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 280
Bsp1720I GCTNAGC 1 cut(s) 188
BspACI CCGC 1 cut(s) 324
BspANI GGCC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 326
BssMI GATC 1 cut(s) 280
BssNI GRCGYC 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 254, 280
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 123, 249
BsuI GTATCC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 254, 280
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 58
CviJI RGCY 4 cut(s) 5, 123, 187, 249
CviKI_1 RGCY 4 cut(s) 5, 123, 187, 249
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eco47III AGCGCT 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 59, 139, 152
FaqI GGGAC 2 cut(s) 41, 53
FatI CATG 1 cut(s) 57
FauI CCCGC 1 cut(s) 317
FokI GGATG 2 cut(s) 241, 287
GlaI GCGC 1 cut(s) 16
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 250
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 2 cut(s) 103, 154
HpaII CCGG 1 cut(s) 250
HphI GGTGA 2 cut(s) 112, 154
Hpy166II GTNNAC 2 cut(s) 118, 145
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 2 cut(s) 118, 145
HpyAV CCTTC 2 cut(s) 17, 191
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 4 cut(s) 92, 171, 267, 319
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 178
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 110, 137, 197, 263, 278
LweI GCATC 1 cut(s) 263
MaeII ACGT 1 cut(s) 178
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 1 cut(s) 62
MfeI CAATTG 1 cut(s) 43
MluCI AATT 2 cut(s) 43, 128
MnlI CCTC 5 cut(s) 187, 194, 209, 228, 289
MslI CAYNNNNRTG 1 cut(s) 259
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 2 cut(s) 125, 251
MunI CAATTG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 125
NciI CCSGG 1 cut(s) 251
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 61
NspI RCATGY 1 cut(s) 61
PciI ACATGT 1 cut(s) 57
PfeI GAWTC 2 cut(s) 103, 154
Ppu21I YACGTR 1 cut(s) 179
PscI ACATGT 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspPI GGNCC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 259
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 125, 251
SetI ASST 4 cut(s) 181, 189, 220, 300
SfaNI GCATC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 259
Sse9I AATT 2 cut(s) 43, 128
SsiI CCGC 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 123, 249
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 181
TasI AATT 2 cut(s) 43, 128
TfiI GAWTC 2 cut(s) 103, 154
TspDTI ATGAA 1 cut(s) 167
XceI RCATGY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.