Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002876

Physical Location & Seq

Genomic Coordinates Reverse (-)

5066874 .. 5067799

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCCGCAAAGGGAAAATTACACCGGAGGGTGCCCCGTACTTCAATGGGTGGTTGAAATAAATACGGATGGTACTGGGGTGGAATTGGGCGATGGCTGGCCGCAATTTATTGCCCAAAATATGACCGAAGGCTGGATGCTAGTGATGTTAAGGTACGAGGGGGCAATGATATTTTCTGCAAGGAGGTATGGCCCTTCGGGAGCGCTGATGGTGGGGACGCCAATGGGGACAATTGTGAAGAAAACATGTGCTTCGGTGGGGGCGTTTTACCATCATTTGCACGGACATACCCCGGGGATATTACGTGGAACAGCAGGTCGGAACAGGATTGACGAGAAAAATATGGGTGAACAATATGAACTGGGAATGTCGTGCAACGCACGTATCCAGCTAAGCGAGGAAGGAGGAGTAATAAAAGGAGGTTGGGAAATGTTTGTGAGGGCAAACATTAGCCGGGCATCCAAGTGGTGCATTGTGGATGTAGATCGTTTCAAGCAGGAGGTAAGAGTGATGGCATTTGTGCAATGCGGGGGGGTGATGGCGTCGAGGGCAATGATCGGTGTCCAAACAATAACCGATAGACGTACGTTGATAGTGCCGAGGAAGACTACCCCGACACAAATGACAATGATGAGGGAGATGATTCGTCGGATGACGAACAAGATGCTCGAGTTGCAACAAAATCCAATCCCAAGTGTTGTGGTCGAGTGGGAGAGAAATATGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

27.28

Weight (kDa)

9.37

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313861
rosa_laevigata	RLG00000000965
rosa_multiflora	Rmu_co8273039.1_g000001 Rmu_sc0000931.1_g000012 Rmu_sc0002045.1_g000026 Rmu_sc0003179.1_g000029 Rmu_sc0006198.1_g000015
rosa_roxburghii	Rroxscaffold_1G00068970 Rroxscaffold_1G00068980 Rroxscaffold_1G00068990 Rroxscaffold_2G00129080 Rroxscaffold_2G00129090 Rroxscaffold_4G00309350 Rroxscaffold_7G00162680 Rroxscaffold_7G00162690
rosa_samantha	Rh1AG005200 Rh1AG007200 Rh1AG007300 Rh1CG040300 Rh1CG040400 Rh1DG029100 Rh2AG353600 Rh3BG122100 Rh5AG305400 Rh5CG248700 Rh5CG248900 Rh5CG249000 Rh6BG075500 Rh6BG075600 Rh6CG151700 Rh7DG361800 Rh7DG361900 Rh7DG362800 Rh7DG363700 Rh7DG363800 Rh7DG364100
rosa_wichuraiana	Rw1G000280 Rw1G010450 Rw6G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	30
AciI	CCGC	4 cut(s)	5, 101, 528, 724
AcoI	YGGCCR	1 cut(s)	98
AcyI	GRCGYC	2 cut(s)	218, 542
AfaI	GTAC	4 cut(s)	39, 73, 155, 586
AfeI	AGCGCT	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	132
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	44, 56, 493
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
Ama87I	CYCGRG	2 cut(s)	292, 668
Aor51HI	AGCGCT	1 cut(s)	204
AoxI	GGCC	2 cut(s)	98, 190
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	3 cut(s)	293, 294, 455
AsuHPI	GGTGA	2 cut(s)	359, 547
AvaI	CYCGRG	2 cut(s)	292, 668
BaeGI	GKGCMC	1 cut(s)	35
BaeI	ACNNNNGTAYC	4 cut(s)	63, 96, 367, 400
BanI	GGYRCC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	611
BccI	CCATC	6 cut(s)	62, 86, 202, 279, 505, 532
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciVI	GTATCC	1 cut(s)	395
BcnI	CCSGG	3 cut(s)	293, 294, 455
BfaI	CTAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	395
BisI	GCNGC	2 cut(s)	5, 101
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	2 cut(s)	6, 102
Bme1390I	CCNGG	3 cut(s)	293, 294, 455
BmeT110I	CYCGRG	2 cut(s)	292, 668
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	3 cut(s)	293, 294, 455
BmrI	ACTGGG	2 cut(s)	84, 371
BmsI	GCATC	3 cut(s)	126, 467, 654
BmuI	ACTGGG	2 cut(s)	84, 371
BpiI	GAAGAC	1 cut(s)	611
Bpu1102I	GCTNAGC	1 cut(s)	392
BpuMI	CCSGG	3 cut(s)	293, 294, 455
BsaAI	YACGTR	2 cut(s)	305, 383
BsaBI	GATNNNNATC	1 cut(s)	483
BsaHI	GRCGYC	2 cut(s)	218, 542
BsaJI	CCNNGG	4 cut(s)	291, 292, 293, 599
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	2 cut(s)	79, 366
Bse3DI	GCAATG	3 cut(s)	171, 530, 558
Bse8I	GATNNNNATC	1 cut(s)	483
BseDI	CCNNGG	4 cut(s)	291, 292, 293, 599
BseGI	GGATG	5 cut(s)	73, 141, 458, 484, 657
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	3 cut(s)	171, 530, 558
BseNI	ACTGG	2 cut(s)	79, 366
BseRI	GAGGAG	1 cut(s)	420
BseSI	GKGCMC	1 cut(s)	35
BshFI	GGCC	2 cut(s)	100, 192
BshNI	GGYRCC	1 cut(s)	30
BsiHKCI	CYCGRG	2 cut(s)	292, 668
BsiSI	CCGG	3 cut(s)	24, 293, 454
BsiWI	CGTACG	1 cut(s)	584
BslFI	GGGAC	2 cut(s)	229, 241
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	229, 241
BsnI	GGCC	2 cut(s)	100, 192
BsoBI	CYCGRG	2 cut(s)	292, 668
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	484, 555
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	4 cut(s)	5, 101, 528, 724
BspANI	GGCC	2 cut(s)	100, 192
BspLI	GGNNCC	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	30
BsrDI	GCAATG	3 cut(s)	171, 530, 558
BsrI	ACTGG	2 cut(s)	79, 366
BssECI	CCNNGG	4 cut(s)	291, 292, 293, 599
BssMI	GATC	2 cut(s)	484, 555
BssNI	GRCGYC	2 cut(s)	218, 542
BstACI	GRCGYC	2 cut(s)	218, 542
BstBAI	YACGTR	2 cut(s)	305, 383
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	392
BstF5I	GGATG	5 cut(s)	73, 141, 458, 484, 657
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	2 cut(s)	487, 558
BstMBI	GATC	2 cut(s)	484, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	548, 673
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	3 cut(s)	291, 292, 453
BstSLI	GKGCMC	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	611
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	100, 192
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	5 cut(s)	73, 141, 458, 484, 657
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	98
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	191
Cfr9I	CCCGGG	1 cut(s)	292
CseI	GACGC	2 cut(s)	226, 531
Csp6I	GTAC	4 cut(s)	38, 72, 154, 585
CspCI	CAANNNNNGTGG	2 cut(s)	681, 716
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	6 cut(s)	96, 100, 132, 192, 391, 453
CviKI_1	RGCY	6 cut(s)	96, 100, 132, 192, 391, 453
CviQI	GTAC	4 cut(s)	38, 72, 154, 585
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	2 cut(s)	486, 557
DpnII	GATC	2 cut(s)	484, 555
EaeI	YGGCCR	1 cut(s)	98
Eco47III	AGCGCT	1 cut(s)	204
Eco88I	CYCGRG	2 cut(s)	292, 668
FaeI	CATG	1 cut(s)	249
FaiI	YATR	7 cut(s)	122, 189, 247, 288, 344, 357, 722
FaqI	GGGAC	2 cut(s)	229, 241
FatI	CATG	1 cut(s)	245
FauI	CCCGC	1 cut(s)	521
Fnu4HI	GCNGC	2 cut(s)	5, 101
FokI	GGATG	5 cut(s)	80, 148, 445, 491, 664
Fsp4HI	GCNGC	2 cut(s)	5, 101
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	2 cut(s)	5, 101
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	100, 192
HapII	CCGG	3 cut(s)	24, 293, 454
HgaI	GACGC	2 cut(s)	226, 531
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	2 cut(s)	218, 542
Hin1II	CATG	1 cut(s)	249
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	1 cut(s)	643
HpaII	CCGG	3 cut(s)	24, 293, 454
HphI	GGTGA	2 cut(s)	359, 547
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	321, 651
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	2 cut(s)	547, 651
HpyAV	CCTTC	3 cut(s)	122, 204, 395
HpyCH4IV	ACGT	4 cut(s)	304, 382, 583, 587
HpyCH4V	TGCA	6 cut(s)	179, 280, 375, 471, 523, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	548, 673
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	4 cut(s)	304, 382, 583, 587
Hsp92I	GRCGYC	2 cut(s)	218, 542
Hsp92II	CATG	1 cut(s)	249
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	2 cut(s)	484, 555
LmnI	GCTCC	1 cut(s)	200
LweI	GCATC	3 cut(s)	126, 467, 654
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	4 cut(s)	304, 382, 583, 587
MalI	GATC	2 cut(s)	486, 557
MboI	GATC	2 cut(s)	484, 555
MboII	GAAGA	2 cut(s)	250, 616
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	4 cut(s)	16, 83, 104, 231
MmeI	TCCRAC	2 cut(s)	299, 629
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	463
MspI	CCGG	3 cut(s)	24, 293, 454
MspR9I	CCNGG	3 cut(s)	293, 294, 455
MunI	CAATTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	548, 673
NciI	CCSGG	3 cut(s)	293, 294, 455
NdeII	GATC	2 cut(s)	484, 555
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	1 cut(s)	32
NmeAIII	GCCGAG	1 cut(s)	624
NspI	RCATGY	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	668
PciI	ACATGT	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	643
Pfl23II	CGTACG	1 cut(s)	584
PkrI	GCNGC	2 cut(s)	6, 102
Ppu21I	YACGTR	2 cut(s)	305, 383
PscI	ACATGT	1 cut(s)	245
PspLI	CGTACG	1 cut(s)	584
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	191
PspXI	VCTCGAGB	1 cut(s)	668
RsaI	GTAC	4 cut(s)	39, 73, 155, 586
RsaNI	GTAC	4 cut(s)	38, 72, 154, 585
RseI	CAYNNNNRTG	1 cut(s)	463
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	2 cut(s)	5, 101
Sau3AI	GATC	2 cut(s)	484, 555
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	3 cut(s)	293, 294, 455
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	3 cut(s)	126, 467, 654
Sfr274I	CTCGAG	1 cut(s)	668
SlaI	CTCGAG	1 cut(s)	668
SmaI	CCCGGG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	463
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	4 cut(s)	16, 83, 104, 231
SsiI	CCGC	4 cut(s)	5, 101, 528, 724
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	291, 292, 453
TaiI	ACGT	4 cut(s)	307, 385, 586, 590
TaqI	TCGA	3 cut(s)	545, 669, 705
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	4 cut(s)	16, 83, 104, 231
TauI	GCSGC	2 cut(s)	7, 103
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	372
TspGWI	ACGGA	2 cut(s)	80, 297
TspMI	CCCGGG	1 cut(s)	292
XceI	RCATGY	1 cut(s)	249
XhoI	CTCGAG	1 cut(s)	668
XmaI	CCCGGG	1 cut(s)	292
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.