Rroxscaffold_1G00068970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002876
Physical Location & Seq
Forward (+)
90033311 .. 90037012
3702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00068970.1

Sequence Viewer

Length: 801 bp
ATGGCCGTCGGTCCAAACACCGAAACTTTTTATTTAACCCCACTGGTGTCAAACAACGGAAAACCGACGCTGTTCGCGGCTTGTGACTATCCGGCTGTCCGTAAAGGCGTTCGATCAACAATGACCCCATGTTGTGTCCCACCGTGGATAATTGTCACAAATAACCGACCCGGCGGCGTCCATGATGTATGGCACCATCGCATAAGAAGCATGACACCGGAAAATGAAGCTAACGGTCGGGGTTCCTATCTAGTAAAGAGGCCGGGGGATAGGCTTCGTAGCAAAGGAAGAGTGGGAGTGATCGACCTCGGCGCCGTCGAAGAGATTGCATCCACAAACGGTCGGCGCGACCGCGTAGTTGCGGCGAAGAAGGCATATCCGTCGGTCGCGGTAATCCCTCCTCCATTTGTAGAAGAATTCATGAATGGCGACAGATGCCGCAAAGGGAAAATTACACCGGAGGGGTGCCCCGTACTTCAATGGGTGGTTGAAATAAATACGGATGGTACTTGGGGTGGAATTGGGCGATGGCTGGCCGCAATTTATTGCCCAAAATATGACCGAAGGCTGGATGCTAGTGATGTTAAGGTACGAGGGGGCAATGATATTTTCTGCAAGGAGGTATGGCCCTTCGGGAGCGCTGATGGTGGGGACGCCAATGGGGACAATTGTGAAGAAAACATGTGCTTCAGGTGGGGGCGTTTTACCATCATTTGCACGGTTGGTGATTCCCGATGGAGTGAACAGCCAGGAATTGGTAAAGCAAACTTTAATTACGGTCCTCAACTATGTTGTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.36

Weight (kDa)

8.83

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 192, 311, 465
AccB7I CCANNNNNTGG 1 cut(s) 755
AccII CGCG 4 cut(s) 77, 348, 354, 389
AciI CCGC 7 cut(s) 77, 174, 352, 362, 389, 439, 537
AcoI YGGCCR 2 cut(s) 3, 534
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 673
AcyI GRCGYC 3 cut(s) 177, 312, 654
AfaI GTAC 3 cut(s) 474, 508, 591
AfeI AGCGCT 1 cut(s) 640
AfiI CCNNNNNNNGG 2 cut(s) 568, 755
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 2 cut(s) 479, 491
AjnI CCWGG 1 cut(s) 748
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 640
AoxI GGCC 4 cut(s) 3, 260, 534, 626
ApoI RAATTY 1 cut(s) 416
AspLEI GCGC 3 cut(s) 314, 348, 641
AspS9I GGNCC 3 cut(s) 11, 627, 779
AsuC2I CCSGG 2 cut(s) 171, 264
AsuHPI GGTGA 1 cut(s) 737
AvaII GGWCC 2 cut(s) 11, 779
BaeGI GKGCMC 1 cut(s) 470
BanI GGYRCC 3 cut(s) 192, 311, 465
BccI CCATC 6 cut(s) 204, 497, 522, 638, 716, 729
BceAI ACGGC 1 cut(s) 299
BcgI CGANNNNNNTGC 4 cut(s) 308, 342, 363, 397
BciT130I CCWGG 1 cut(s) 750
BcnI CCSGG 2 cut(s) 171, 264
BfaI CTAG 2 cut(s) 251, 576
BfoI RGCGCY 2 cut(s) 315, 642
BisI GCNGC 5 cut(s) 78, 175, 363, 439, 537
BlsI GCNGC 5 cut(s) 79, 176, 364, 440, 538
Bme1390I CCNGG 3 cut(s) 171, 264, 750
Bme18I GGWCC 2 cut(s) 11, 779
BmgT120I GGNCC 3 cut(s) 11, 627, 779
BmiI GGNNCC 4 cut(s) 194, 244, 313, 467
BmrFI CCNGG 3 cut(s) 171, 264, 750
BmsI GCATC 3 cut(s) 338, 425, 562
BpuMI CCSGG 2 cut(s) 171, 264
BsaHI GRCGYC 3 cut(s) 177, 312, 654
BsaJI CCNNGG 3 cut(s) 143, 263, 307
BsaWI WCCGGW 2 cut(s) 217, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 568, 755
Bse1I ACTGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 607
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 3 cut(s) 143, 263, 307
BseGI GGATG 3 cut(s) 329, 508, 577
BseLI CCNNNNNNNGG 2 cut(s) 568, 755
BseMI GCAATG 1 cut(s) 607
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 390
BseSI GKGCMC 1 cut(s) 470
Bsh1236I CGCG 4 cut(s) 77, 348, 354, 389
Bsh1285I CGRYCG 4 cut(s) 238, 343, 352, 387
BshFI GGCC 4 cut(s) 5, 262, 536, 628
BshNI GGYRCC 3 cut(s) 192, 311, 465
BsiEI CGRYCG 4 cut(s) 238, 343, 352, 387
BsiSI CCGG 5 cut(s) 92, 171, 218, 263, 458
BslFI GGGAC 3 cut(s) 122, 665, 677
BslI CCNNNNNNNGG 2 cut(s) 568, 755
BsmFI GGGAC 3 cut(s) 122, 665, 677
BsnI GGCC 4 cut(s) 5, 262, 536, 628
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 2 cut(s) 113, 300
BspACI CCGC 7 cut(s) 77, 174, 352, 362, 389, 439, 537
BspANI GGCC 4 cut(s) 5, 262, 536, 628
BspFNI CGCG 4 cut(s) 77, 348, 354, 389
BspHI TCATGA 1 cut(s) 420
BspLI GGNNCC 4 cut(s) 194, 244, 313, 467
BspT107I GGYRCC 3 cut(s) 192, 311, 465
BsrDI GCAATG 1 cut(s) 607
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 3 cut(s) 143, 263, 307
BssMI GATC 2 cut(s) 113, 300
BssNI GRCGYC 3 cut(s) 177, 312, 654
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 5 cut(s) 144, 236, 341, 721, 779
Bst6I CTCTTC 2 cut(s) 283, 315
BstACI GRCGYC 3 cut(s) 177, 312, 654
BstC8I GCNNGC 1 cut(s) 534
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 3 cut(s) 329, 508, 577
BstFNI CGCG 4 cut(s) 77, 348, 354, 389
BstH2I RGCGCY 2 cut(s) 315, 642
BstHHI GCGC 3 cut(s) 314, 348, 641
BstKTI GATC 2 cut(s) 116, 303
BstMBI GATC 2 cut(s) 113, 300
BstMCI CGRYCG 4 cut(s) 238, 343, 352, 387
BstMWI GCNNNNNNNGC 3 cut(s) 207, 371, 435
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 3 cut(s) 169, 262, 748
BstSLI GKGCMC 1 cut(s) 470
BstUI CGCG 4 cut(s) 77, 348, 354, 389
BsuRI GGCC 4 cut(s) 5, 262, 536, 628
BtgI CCRYGG 1 cut(s) 143
BtgZI GCGATG 2 cut(s) 182, 541
BtsCI GGATG 3 cut(s) 329, 508, 577
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 534
CciI TCATGA 1 cut(s) 420
CfoI GCGC 3 cut(s) 314, 348, 641
Cfr13I GGNCC 3 cut(s) 11, 627, 779
CseI GACGC 3 cut(s) 76, 166, 662
Csp6I GTAC 3 cut(s) 473, 507, 590
CviAII CATG 5 cut(s) 129, 182, 211, 421, 682
CviQI GTAC 3 cut(s) 473, 507, 590
DinI GGCGCC 1 cut(s) 313
DpnI GATC 2 cut(s) 115, 302
DpnII GATC 2 cut(s) 113, 300
EaeI YGGCCR 2 cut(s) 3, 534
Eam1104I CTCTTC 2 cut(s) 283, 315
EarI CTCTTC 2 cut(s) 283, 315
Eco47I GGWCC 2 cut(s) 11, 779
Eco47III AGCGCT 1 cut(s) 640
Eco57I CTGAAG 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 748
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
FaeI CATG 5 cut(s) 132, 185, 214, 424, 685
FaqI GGGAC 3 cut(s) 122, 665, 677
FatI CATG 5 cut(s) 128, 181, 210, 420, 681
Fnu4HI GCNGC 5 cut(s) 78, 175, 363, 439, 537
FokI GGATG 3 cut(s) 316, 515, 584
Fsp4HI GCNGC 5 cut(s) 78, 175, 363, 439, 537
FspBI CTAG 2 cut(s) 251, 576
GlaI GCGC 3 cut(s) 313, 347, 640
GluI GCNGC 5 cut(s) 78, 175, 363, 439, 537
HaeII RGCGCY 2 cut(s) 315, 642
HaeIII GGCC 4 cut(s) 5, 262, 536, 628
HapII CCGG 5 cut(s) 92, 171, 218, 263, 458
HgaI GACGC 3 cut(s) 76, 166, 662
HhaI GCGC 3 cut(s) 314, 348, 641
Hin1I GRCGYC 3 cut(s) 177, 312, 654
Hin1II CATG 5 cut(s) 132, 185, 214, 424, 685
Hin6I GCGC 3 cut(s) 312, 346, 639
HinP1I GCGC 3 cut(s) 312, 346, 639
HinfI GANTC 1 cut(s) 728
HpaII CCGG 5 cut(s) 92, 171, 218, 263, 458
HphI GGTGA 1 cut(s) 737
Hpy166II GTNNAC 1 cut(s) 743
Hpy188III TCNNGA 3 cut(s) 421, 634, 732
Hpy8I GTNNAC 1 cut(s) 743
Hpy99I CGWCG 4 cut(s) 11, 70, 320, 385
HpyAV CCTTC 3 cut(s) 364, 558, 640
HpyCH4III ACNGT 5 cut(s) 144, 236, 341, 721, 779
HpyCH4V TGCA 3 cut(s) 329, 615, 717
HpyF10VI GCNNNNNNNGC 3 cut(s) 207, 371, 435
Hsp92I GRCGYC 3 cut(s) 177, 312, 654
Hsp92II CATG 5 cut(s) 132, 185, 214, 424, 685
HspAI GCGC 3 cut(s) 312, 346, 639
KasI GGCGCC 1 cut(s) 311
Kzo9I GATC 2 cut(s) 113, 300
LmnI GCTCC 1 cut(s) 636
LweI GCATC 3 cut(s) 338, 425, 562
MaeI CTAG 2 cut(s) 251, 576
MaeIII GTNAC 2 cut(s) 83, 154
MalI GATC 2 cut(s) 115, 302
MboI GATC 2 cut(s) 113, 300
MboII GAAGA 5 cut(s) 300, 332, 379, 425, 686
MfeI CAATTG 1 cut(s) 667
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 8 cut(s) 150, 416, 450, 519, 540, 667, 753, 772
Mly113I GGCGCC 1 cut(s) 312
MnlI CCTC 8 cut(s) 252, 317, 408, 411, 454, 587, 613, 792
MseI TTAA 3 cut(s) 35, 585, 771
MspI CCGG 5 cut(s) 92, 171, 218, 263, 458
MspR9I CCNGG 3 cut(s) 171, 264, 750
MunI CAATTG 1 cut(s) 667
MvaI CCWGG 1 cut(s) 750
MvnI CGCG 4 cut(s) 77, 348, 354, 389
MwoI GCNNNNNNNGC 3 cut(s) 207, 371, 435
NarI GGCGCC 1 cut(s) 312
NciI CCSGG 2 cut(s) 171, 264
NdeII GATC 2 cut(s) 113, 300
NlaIII CATG 5 cut(s) 132, 185, 214, 424, 685
NlaIV GGNNCC 4 cut(s) 194, 244, 313, 467
NmeAIII GCCGAG 1 cut(s) 288
NmuCI GTSAC 2 cut(s) 83, 154
NspI RCATGY 1 cut(s) 685
PagI TCATGA 1 cut(s) 420
PciI ACATGT 1 cut(s) 681
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 345
PfeI GAWTC 1 cut(s) 728
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 5 cut(s) 79, 176, 364, 440, 538
PluTI GGCGCC 1 cut(s) 315
PscI ACATGT 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 4 cut(s) 194, 244, 313, 467
PspPI GGNCC 3 cut(s) 11, 627, 779
RsaI GTAC 3 cut(s) 474, 508, 591
RsaNI GTAC 3 cut(s) 473, 507, 590
SaqAI TTAA 3 cut(s) 35, 585, 771
SatI GCNGC 5 cut(s) 78, 175, 363, 439, 537
Sau3AI GATC 2 cut(s) 113, 300
Sau96I GGNCC 3 cut(s) 11, 627, 779
ScrFI CCNGG 3 cut(s) 171, 264, 750
SduI GDGCHC 1 cut(s) 470
SetI ASST 5 cut(s) 232, 309, 591, 624, 695
SfaNI GCATC 3 cut(s) 338, 425, 562
SfoI GGCGCC 1 cut(s) 313
SinI GGWCC 2 cut(s) 11, 779
Sse9I AATT 8 cut(s) 150, 416, 450, 519, 540, 667, 753, 772
SsiI CCGC 7 cut(s) 77, 174, 352, 362, 389, 439, 537
SspDI GGCGCC 1 cut(s) 311
SspMI CTAG 2 cut(s) 251, 576
StyD4I CCNGG 3 cut(s) 169, 262, 748
TaaI ACNGT 5 cut(s) 144, 236, 341, 721, 779
TaqI TCGA 3 cut(s) 112, 303, 318
TaqII GACCGA 2 cut(s) 373, 576
TasI AATT 8 cut(s) 150, 416, 450, 519, 540, 667, 753, 772
TauI GCSGC 5 cut(s) 80, 177, 365, 441, 539
TfiI GAWTC 1 cut(s) 728
Tru1I TTAA 3 cut(s) 35, 585, 771
Tru9I TTAA 3 cut(s) 35, 585, 771
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 2 cut(s) 83, 154
Tsp45I GTSAC 2 cut(s) 83, 154
TspDTI ATGAA 3 cut(s) 240, 409, 437
TspGWI ACGGA 4 cut(s) 72, 89, 369, 515
TspRI CASTG 1 cut(s) 48
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 2 cut(s) 11, 779
XapI RAATTY 1 cut(s) 416
XceI RCATGY 1 cut(s) 685
XspI CTAG 2 cut(s) 251, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.