Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002045.1

Orthogroup ID

OG0002876

Physical Location & Seq

Genomic Coordinates Reverse (-)

133634 .. 135529

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atggcttcaggaagtggatcacaccgtccaatgcagatgggaaggcagccgtgtttcatccaagttgtgaggagcccgtcaaagaacactgagagtttggtcatccctcctccatttgtgatagagttcatgaatggtgacagatgccggcagggaaagataaaactggaaggattgggacagtgccaatggcgggttgaaataaatacggatggggggggagttgaattgggtgaagggtgggcggaatttgtaggggaaaatttggtggacgggtggatgctagtgctgttaaggtacgagggggcaatgactttttctgccaggagatatggccggtcaggagctctgatggtgacggcaccaagggggagacagacagaggagacaccagctggagttgggggcatttatccatcatttacacagttggttattccaggtggaatgaacagcgaagtactggaaataccagcagggatcttccgtggagggtcaagtcgaaccacgattgagagtaaggtttggttgaataatatgaattgggggatgtcgtgcaatgcacgtatcaaggtaagtgaggatggaggagtcataaaaggaggttgggataggtgggtgagtgcaaacattgtaagggtatgcaagtggtgcattgtggattataatcgttcaaaaaatgaggcatctgtgatggcgtttctgcaatgtggaggggtgatgtcgaatgtgccaatgatgaatgccgtatcaatcggtgatgctatgtacgttgatagttgtcatgaagaatatccagaggaagaggaggaagaggaggaagatctggctgatggaggacaagctggtcatatggtacagtttccaatacctcaaactgtgatccgagttggaaaaaaatatgggcaacttcccacggagtatgcaaagcaatatttcccgggtgtcggtagtcgtcaggttgttgtgaggactggagatggacaatcatgggaggtttcatttgtgaagtcaaatgaaacatataggttcagcggagggtttgtggaactaaagaaaggatatgggctgaaggtgggaaacaaatgcaagctttcgtaccaaggaaactgggtatttgtgatggagaagatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

378

Amino Acids

41.78

Weight (kDa)

6.09

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	19 - 106	7.3e-10	B3 DNA binding domain
B3	PF02362	304 - 370	7e-06	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313861
rosa_laevigata	RLG00000000965
rosa_multiflora	Rmu_co8273039.1_g000001 Rmu_sc0000931.1_g000012 Rmu_sc0002045.1_g000026 Rmu_sc0003179.1_g000029 Rmu_sc0006198.1_g000015
rosa_roxburghii	Rroxscaffold_1G00068970 Rroxscaffold_1G00068980 Rroxscaffold_1G00068990 Rroxscaffold_2G00129080 Rroxscaffold_2G00129090 Rroxscaffold_4G00309350 Rroxscaffold_7G00162680 Rroxscaffold_7G00162690
rosa_samantha	Rh1AG005200 Rh1AG007200 Rh1AG007300 Rh1CG040300 Rh1CG040400 Rh1DG029100 Rh2AG353600 Rh3BG122100 Rh5AG305400 Rh5CG248700 Rh5CG248900 Rh5CG249000 Rh6BG075500 Rh6BG075600 Rh6CG151700 Rh7DG361800 Rh7DG361900 Rh7DG362800 Rh7DG363700 Rh7DG363800 Rh7DG364100
rosa_wichuraiana	Rw1G000280 Rw1G010450 Rw6G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
AasI	GACNNNNNNGTC	1 cut(s)	846
AccB1I	GGYRCC	1 cut(s)	361
AciI	CCGC	3 cut(s)	193, 245, 1035
AclWI	GGATC	3 cut(s)	25, 488, 877
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	248, 262
AcuI	CTGAAG	1 cut(s)	1091
AfaI	GTAC	5 cut(s)	299, 462, 770, 858, 1100
AfiI	CCNNNNNNNGG	2 cut(s)	193, 947
AgsI	TTSAA	4 cut(s)	200, 227, 532, 675
AjnI	CCWGG	2 cut(s)	323, 439
AluBI	AGCT	4 cut(s)	347, 395, 845, 1093
AluI	AGCT	4 cut(s)	347, 395, 845, 1093
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	367, 380
AlwI	GGATC	3 cut(s)	25, 488, 877
Ama87I	CYCGRG	1 cut(s)	940
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	248, 262
AsuC2I	CCSGG	2 cut(s)	941, 942
AsuHPI	GGTGA	6 cut(s)	149, 245, 367, 631, 730, 770
AvaI	CYCGRG	1 cut(s)	940
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	77, 349
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	9 cut(s)	31, 206, 346, 424, 578, 688, 827, 974, 1117
BceAI	ACGGC	3 cut(s)	34, 375, 731
BciT130I	CCWGG	2 cut(s)	325, 441
BcnI	CCSGG	2 cut(s)	941, 942
BcoDI	GTCTC	2 cut(s)	367, 380
BfaI	CTAG	1 cut(s)	284
BglII	AGATCT	1 cut(s)	823
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
BmcAI	AGTACT	1 cut(s)	462
Bme1390I	CCNGG	4 cut(s)	325, 441, 941, 942
BmeT110I	CYCGRG	1 cut(s)	940
BmiI	GGNNCC	2 cut(s)	74, 363
BmrFI	CCNGG	4 cut(s)	325, 441, 941, 942
BmrI	ACTGGG	1 cut(s)	1120
BmsI	GCATC	4 cut(s)	134, 270, 695, 751
BmuI	ACTGGG	1 cut(s)	1120
BpmI	CTGGAG	2 cut(s)	417, 996
BpuMI	CCSGG	2 cut(s)	941, 942
BsaAI	YACGTR	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	666
BsaJI	CCNNGG	5 cut(s)	365, 487, 915, 940, 1102
BsaXI	ACNNNNNCTCC	3 cut(s)	1029, 1059, 1118
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 947
Bse118I	RCCGGY	2 cut(s)	147, 336
Bse1I	ACTGG	4 cut(s)	171, 468, 979, 1115
Bse3DI	GCAATG	3 cut(s)	315, 565, 713
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	325, 441
BseDI	CCNNGG	5 cut(s)	365, 487, 915, 940, 1102
BseGI	GGATG	6 cut(s)	57, 102, 217, 285, 555, 589
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	2 cut(s)	193, 947
BseMI	GCAATG	3 cut(s)	315, 565, 713
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	4 cut(s)	171, 468, 979, 1115
BseRI	GAGGAG	6 cut(s)	85, 99, 398, 603, 821, 830
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	336
BshNI	GGYRCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	940
BsiSI	CCGG	3 cut(s)	148, 337, 941
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	193, 947
BsmAI	GTCTC	2 cut(s)	367, 380
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	1 cut(s)	336
BsoBI	CYCGRG	1 cut(s)	940
Bsp1286I	GDGCHC	2 cut(s)	77, 349
Bsp143I	GATC	4 cut(s)	17, 480, 823, 882
BspACI	CCGC	3 cut(s)	193, 245, 1035
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	1 cut(s)	82
BspHI	TCATGA	2 cut(s)	129, 784
BspLI	GGNNCC	2 cut(s)	74, 363
BspPI	GGATC	3 cut(s)	25, 488, 877
BspT107I	GGYRCC	1 cut(s)	361
BsrDI	GCAATG	3 cut(s)	315, 565, 713
BsrFI	RCCGGY	2 cut(s)	147, 336
BsrI	ACTGG	4 cut(s)	171, 468, 979, 1115
BssAI	RCCGGY	2 cut(s)	147, 336
BssECI	CCNNGG	5 cut(s)	365, 487, 915, 940, 1102
BssMI	GATC	4 cut(s)	17, 480, 823, 882
BssT1I	CCWWGG	2 cut(s)	365, 1102
Bst2UI	CCWGG	2 cut(s)	325, 441
Bst4CI	ACNGT	5 cut(s)	26, 183, 429, 861, 880
Bst6I	CTCTTC	2 cut(s)	798, 807
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	149, 1091
BstDEI	CTNAG	1 cut(s)	90
BstDSI	CCRYGG	2 cut(s)	487, 915
BstF5I	GGATG	6 cut(s)	57, 102, 217, 285, 555, 589
BstKTI	GATC	4 cut(s)	20, 483, 826, 885
BstMAI	GTCTC	2 cut(s)	367, 380
BstMBI	GATC	4 cut(s)	17, 480, 823, 882
BstMWI	GCNNNNNNNGC	1 cut(s)	651
BstNI	CCWGG	2 cut(s)	325, 441
BstSCI	CCNGG	4 cut(s)	323, 439, 939, 940
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	2 cut(s)	480, 823
BstYI	RGATCY	2 cut(s)	480, 823
BsuRI	GGCC	1 cut(s)	336
BtgI	CCRYGG	2 cut(s)	487, 915
BtsCI	GGATG	6 cut(s)	57, 102, 217, 285, 555, 589
BtsIMutI	CAGTG	2 cut(s)	87, 188
Cac8I	GCNNGC	2 cut(s)	149, 1091
CciI	TCATGA	2 cut(s)	129, 784
Cfr10I	RCCGGY	2 cut(s)	147, 336
Cfr9I	CCCGGG	1 cut(s)	940
Csp6I	GTAC	5 cut(s)	298, 461, 769, 857, 1099
CviAII	CATG	3 cut(s)	130, 785, 990
CviQI	GTAC	5 cut(s)	298, 461, 769, 857, 1099
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	4 cut(s)	19, 482, 825, 884
DpnII	GATC	4 cut(s)	17, 480, 823, 882
DrdI	GACNNNNNNGTC	1 cut(s)	846
DseDI	GACNNNNNNGTC	1 cut(s)	846
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	2 cut(s)	798, 807
EarI	CTCTTC	2 cut(s)	798, 807
EciI	GGCGGA	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	347
Eco130I	CCWWGG	2 cut(s)	365, 1102
Eco24I	GRGCYC	2 cut(s)	77, 349
Eco53kI	GAGCTC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	1091
Eco88I	CYCGRG	1 cut(s)	940
EcoICRI	GAGCTC	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	323, 439
EcoT14I	CCWWGG	2 cut(s)	365, 1102
EcoT38I	GRGCYC	2 cut(s)	77, 349
ErhI	CCWWGG	2 cut(s)	365, 1102
FaeI	CATG	3 cut(s)	133, 788, 993
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	3 cut(s)	129, 784, 989
FauI	CCCGC	1 cut(s)	186
FauNDI	CATATG	1 cut(s)	852
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	6 cut(s)	44, 89, 224, 292, 562, 596
FriOI	GRGCYC	2 cut(s)	77, 349
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	1 cut(s)	47
GsuI	CTGGAG	2 cut(s)	417, 996
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	3 cut(s)	148, 337, 941
Hin1II	CATG	3 cut(s)	133, 788, 993
HindIII	AAGCTT	1 cut(s)	1091
HinfI	GANTC	1 cut(s)	591
HpaII	CCGG	3 cut(s)	148, 337, 941
HphI	GGTGA	6 cut(s)	149, 245, 367, 631, 730, 770
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	351, 887
Hpy188III	TCNNGA	5 cut(s)	9, 130, 342, 785, 797
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	4 cut(s)	36, 164, 230, 1066
HpyCH4III	ACNGT	5 cut(s)	26, 183, 429, 861, 880
HpyCH4IV	ACGT	2 cut(s)	565, 771
HpyCH4V	TGCA	9 cut(s)	34, 558, 563, 626, 645, 654, 706, 926, 1089
HpyF10VI	GCNNNNNNNGC	1 cut(s)	651
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	2 cut(s)	565, 771
Hsp92II	CATG	3 cut(s)	133, 788, 993
KroI	GCCGGC	1 cut(s)	147
KroNI	GCCGGC	1 cut(s)	149
Kzo9I	GATC	4 cut(s)	17, 480, 823, 882
LmnI	GCTCC	2 cut(s)	72, 344
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	4 cut(s)	134, 270, 695, 751
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	565, 771
MaeIII	GTNAC	2 cut(s)	137, 355
MalI	GATC	4 cut(s)	19, 482, 825, 884
MboI	GATC	4 cut(s)	17, 480, 823, 882
MboII	GAAGA	5 cut(s)	475, 800, 815, 824, 833
MflI	RGATCY	2 cut(s)	480, 823
MhlI	GDGCHC	2 cut(s)	77, 349
MluCI	AATT	4 cut(s)	227, 248, 262, 541
MlyI	GAGTC	1 cut(s)	600
MmeI	TCCRAC	1 cut(s)	871
MroNI	GCCGGC	1 cut(s)	147
MseI	TTAA	1 cut(s)	293
MspA1I	CMGCKG	2 cut(s)	395, 1035
MspI	CCGG	3 cut(s)	148, 337, 941
MspR9I	CCNGG	4 cut(s)	325, 441, 941, 942
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	2 cut(s)	325, 441
MwoI	GCNNNNNNNGC	1 cut(s)	651
NaeI	GCCGGC	1 cut(s)	149
NciI	CCSGG	2 cut(s)	941, 942
NdeI	CATATG	1 cut(s)	852
NdeII	GATC	4 cut(s)	17, 480, 823, 882
NgoMIV	GCCGGC	1 cut(s)	147
NlaIII	CATG	3 cut(s)	133, 788, 993
NlaIV	GGNNCC	2 cut(s)	74, 363
NmuCI	GTSAC	2 cut(s)	137, 355
PagI	TCATGA	2 cut(s)	129, 784
PctI	GAATGC	1 cut(s)	748
PdiI	GCCGGC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
Ppu21I	YACGTR	1 cut(s)	566
PsiI	TTATAA	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	323, 439
PspGI	CCWGG	2 cut(s)	323, 439
PspN4I	GGNNCC	2 cut(s)	74, 363
PsuI	RGATCY	2 cut(s)	480, 823
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	5 cut(s)	299, 462, 770, 858, 1100
RsaNI	GTAC	5 cut(s)	298, 461, 769, 857, 1099
SacI	GAGCTC	1 cut(s)	349
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	4 cut(s)	17, 480, 823, 882
ScaI	AGTACT	1 cut(s)	462
SchI	GAGTC	1 cut(s)	600
ScrFI	CCNGG	4 cut(s)	325, 441, 941, 942
SduI	GDGCHC	2 cut(s)	77, 349
SfaNI	GCATC	4 cut(s)	134, 270, 695, 751
SmaI	CCCGGG	1 cut(s)	942
Sse9I	AATT	4 cut(s)	227, 248, 262, 541
SsiI	CCGC	3 cut(s)	193, 245, 1035
SspI	AATATT	1 cut(s)	935
SspMI	CTAG	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	349
StyD4I	CCNGG	4 cut(s)	323, 439, 939, 940
StyI	CCWWGG	2 cut(s)	365, 1102
TaaI	ACNGT	5 cut(s)	26, 183, 429, 861, 880
TaiI	ACGT	2 cut(s)	568, 774
TaqI	TCGA	2 cut(s)	502, 725
TasI	AATT	4 cut(s)	227, 248, 262, 541
TatI	WGTACW	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	2 cut(s)	94, 188
TseFI	GTSAC	2 cut(s)	137, 355
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	2 cut(s)	137, 355
TspDTI	ATGAA	9 cut(s)	46, 118, 146, 464, 554, 755, 801, 990, 1032
TspGWI	ACGGA	3 cut(s)	224, 476, 932
TspMI	CCCGGG	1 cut(s)	940
TspRI	CASTG	2 cut(s)	94, 188
XapI	RAATTY	2 cut(s)	248, 262
XmaI	CCCGGG	1 cut(s)	940
XspI	CTAG	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.