Rmu_sc0004031.1_g000020

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004031.1
OG0001837
Physical Location & Seq
Forward (+)
85118 .. 85894
777 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 777 bp
atgtcagatccttattttgttggccgctttttgtggctacagagaaataaccaaaccctaatacctggcactattataagtactaaggccgaagaacttaccacaaacgacgtgctggcaagattaaggaatttcttcaaactcaagaagaagaaattacaagtgctagctacatggaatgacttggttctctgctgcacagtcagcggaggctattgctattactacgtctgcaatccacggaccatgcaactggttcatcttcctcgcatcgctcaatgcgctggtctccctgatatattcgactatcagcagcctgtgggattcatctgtgagccctacagtaaggaagacagggtcgtcgtccacagtgatcaacaacaagaacaaaaagaagaaaggaaggtaattaaaattaatgcagagtacaagtgtaaggttgtcagaattcttcctcctcatgagacaataaaaccttgtttcgaattcaagattcaggtattctctagtgagactggtgaatggagagaatcactagtgtcatgtccacaaggctttatttattaccaactcggggatgtatctgtctgtgctaccaatggcatgctatattggaataatgctgactatggtgatctgctcgtgctggaaccgttgatcaacaacaagagtactactactactggctattcatttgggagttggatcaagaaaggggtggagaactctgtcgtcggaggacttacaacatactggacaaagaatttcttggtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

258

Amino Acids

29.64

Weight (kDa)

8.25

Isoelectric Point (pI)

24.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 44 - 209 4e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AasI GACNNNNNNGTC 1 cut(s) 359
AciI CCGC 2 cut(s) 25, 207
AclWI GGATC 2 cut(s) 2, 713
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 4 cut(s) 130, 447, 485, 763
AfaI GTAC 3 cut(s) 82, 428, 673
AfiI CCNNNNNNNGG 1 cut(s) 574
AgsI TTSAA 2 cut(s) 139, 490
AhlI ACTAGT 1 cut(s) 535
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw26I GTCTC 3 cut(s) 293, 458, 506
AlwI GGATC 2 cut(s) 2, 713
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 2 cut(s) 22, 87
ApeKI GCWGC 2 cut(s) 195, 313
ApoI RAATTY 4 cut(s) 130, 447, 485, 763
AseI ATTAAT 1 cut(s) 417
Asp700I GAANNNNTTC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 530, 644
AsuII TTCGAA 1 cut(s) 483
AsuNHI GCTAGC 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 339
BauI CACGAG 1 cut(s) 641
BbsI GAAGAC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 182, 325
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 2 cut(s) 373, 657
BcoDI GTCTC 3 cut(s) 293, 458, 506
BcuI ACTAGT 1 cut(s) 535
BfaI CTAG 3 cut(s) 167, 507, 536
BfmI CTRYAG 2 cut(s) 38, 340
BisI GCNGC 3 cut(s) 25, 196, 314
BlsI GCNGC 3 cut(s) 26, 197, 315
BmcAI AGTACT 2 cut(s) 82, 673
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 243
BmeT110I CYCGRG 1 cut(s) 572
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 279
BmtI GCTAGC 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 357
Bpu14I TTCGAA 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 574
Bse1I ACTGG 4 cut(s) 258, 520, 688, 758
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 583
BseLI CCNNNNNNNGG 1 cut(s) 574
BseNI ACTGG 4 cut(s) 258, 520, 688, 758
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 2 cut(s) 182, 325
BsgI GTGCAG 1 cut(s) 181
BshFI GGCC 2 cut(s) 24, 89
BsiHKCI CYCGRG 1 cut(s) 572
BslI CCNNNNNNNGG 1 cut(s) 574
BsmAI GTCTC 3 cut(s) 293, 458, 506
BsnI GGCC 2 cut(s) 24, 89
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 572
Bsp119I TTCGAA 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 5 cut(s) 7, 373, 634, 657, 705
BspACI CCGC 2 cut(s) 25, 207
BspANI GGCC 2 cut(s) 24, 89
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 651
BspOI GCTAGC 1 cut(s) 170
BspPI GGATC 2 cut(s) 2, 713
BspT104I TTCGAA 1 cut(s) 483
BspTNI GGTCTC 1 cut(s) 293
BsrI ACTGG 4 cut(s) 258, 520, 688, 758
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 5 cut(s) 7, 373, 634, 657, 705
BssSI CACGAG 1 cut(s) 641
Bst2BI CACGAG 1 cut(s) 641
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 4 cut(s) 202, 344, 371, 654
BstBI TTCGAA 1 cut(s) 483
BstC8I GCNNGC 3 cut(s) 117, 168, 605
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 1 cut(s) 583
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 5 cut(s) 10, 376, 637, 660, 708
BstMAI GTCTC 3 cut(s) 293, 458, 506
BstMBI GATC 5 cut(s) 7, 373, 634, 657, 705
BstMWI GCNNNNNNNGC 2 cut(s) 204, 281
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 2 cut(s) 38, 340
BstV1I GCAGC 2 cut(s) 182, 325
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 2 cut(s) 24, 89
BtgI CCRYGG 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 256
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 583
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 3 cut(s) 117, 168, 605
CciI TCATGA 1 cut(s) 460
CfoI GCGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 243
Csp6I GTAC 3 cut(s) 81, 427, 672
CviAII CATG 5 cut(s) 174, 247, 461, 543, 604
CviJI RGCY 9 cut(s) 24, 37, 89, 170, 213, 316, 337, 555, 687
CviKI_1 RGCY 9 cut(s) 24, 37, 89, 170, 213, 316, 337, 555, 687
CviQI GTAC 3 cut(s) 81, 427, 672
DdeI CTNAG 1 cut(s) 84
DpnI GATC 5 cut(s) 9, 375, 636, 659, 707
DpnII GATC 5 cut(s) 7, 373, 634, 657, 705
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 572
EcoRI GAATTC 2 cut(s) 447, 485
EcoRII CCWGG 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 5 cut(s) 177, 250, 464, 546, 607
FalI AAGNNNNNCTT 1 cut(s) 752
FatI CATG 5 cut(s) 173, 246, 460, 542, 603
FbaI TGATCA 2 cut(s) 373, 657
Fnu4HI GCNGC 3 cut(s) 25, 196, 314
FokI GGATG 1 cut(s) 590
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 3 cut(s) 25, 196, 314
FspBI CTAG 3 cut(s) 167, 507, 536
GlaI GCGC 1 cut(s) 283
GluI GCNGC 3 cut(s) 25, 196, 314
HaeIII GGCC 2 cut(s) 24, 89
HhaI GCGC 1 cut(s) 284
Hin1II CATG 5 cut(s) 177, 250, 464, 546, 607
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HinfI GANTC 3 cut(s) 324, 493, 530
HphI GGTGA 2 cut(s) 530, 644
Hpy166II GTNNAC 2 cut(s) 367, 548
Hpy188I TCNGA 3 cut(s) 7, 446, 737
Hpy188III TCNNGA 4 cut(s) 145, 461, 490, 709
Hpy8I GTNNAC 2 cut(s) 367, 548
Hpy99I CGWCG 3 cut(s) 113, 365, 737
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 4 cut(s) 202, 344, 371, 654
HpyCH4IV ACGT 2 cut(s) 111, 228
HpyCH4V TGCA 4 cut(s) 198, 234, 250, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 281
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 2 cut(s) 111, 228
Hsp92II CATG 5 cut(s) 177, 250, 464, 546, 607
HspAI GCGC 1 cut(s) 282
Ksp22I TGATCA 2 cut(s) 373, 657
Kzo9I GATC 5 cut(s) 7, 373, 634, 657, 705
Lsp1109I GCAGC 2 cut(s) 182, 325
LweI GCATC 1 cut(s) 279
MaeI CTAG 3 cut(s) 167, 507, 536
MaeII ACGT 2 cut(s) 111, 228
MalI GATC 5 cut(s) 9, 375, 636, 659, 707
MboI GATC 5 cut(s) 7, 373, 634, 657, 705
MboII GAAGA 8 cut(s) 104, 127, 160, 163, 254, 362, 407, 443
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 7 cut(s) 130, 155, 408, 414, 447, 485, 763
MmeI TCCRAC 2 cut(s) 683, 715
MnlI CCTC 5 cut(s) 203, 276, 465, 468, 731
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 3 cut(s) 125, 411, 417
MspA1I CMGCKG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 204, 281
NdeII GATC 5 cut(s) 7, 373, 634, 657, 705
NheI GCTAGC 1 cut(s) 166
NlaIII CATG 5 cut(s) 177, 250, 464, 546, 607
NlaIV GGNNCC 1 cut(s) 651
NspI RCATGY 1 cut(s) 607
NspV TTCGAA 1 cut(s) 483
PaeI GCATGC 1 cut(s) 607
PagI TCATGA 1 cut(s) 460
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 3 cut(s) 324, 493, 530
PflFI GACNNNGTC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 26, 197, 315
PshBI ATTAAT 1 cut(s) 417
PsiI TTATAA 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 651
PspPI GGNCC 1 cut(s) 243
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 3 cut(s) 82, 428, 673
RsaNI GTAC 3 cut(s) 81, 427, 672
SaqAI TTAA 3 cut(s) 125, 411, 417
SatI GCNGC 3 cut(s) 25, 196, 314
Sau3AI GATC 5 cut(s) 7, 373, 634, 657, 705
Sau96I GGNCC 1 cut(s) 243
ScaI AGTACT 2 cut(s) 82, 673
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 339
SetI ASST 8 cut(s) 67, 114, 172, 231, 408, 441, 478, 501
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 2 cut(s) 38, 340
SfuI TTCGAA 1 cut(s) 483
SinI GGWCC 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 535
SphI GCATGC 1 cut(s) 607
Sse9I AATT 7 cut(s) 130, 155, 408, 414, 447, 485, 763
SsiI CCGC 2 cut(s) 25, 207
SspMI CTAG 3 cut(s) 167, 507, 536
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 4 cut(s) 202, 344, 371, 654
TaiI ACGT 2 cut(s) 114, 231
TaqI TCGA 2 cut(s) 303, 483
TasI AATT 7 cut(s) 130, 155, 408, 414, 447, 485, 763
TatI WGTACW 3 cut(s) 80, 426, 671
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 3 cut(s) 324, 493, 530
Tru1I TTAA 3 cut(s) 125, 411, 417
Tru9I TTAA 3 cut(s) 125, 411, 417
TscAI CASTG 1 cut(s) 376
TseI GCWGC 2 cut(s) 195, 313
TspDTI ATGAA 3 cut(s) 248, 316, 681
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 376
Tth111I GACNNNGTC 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 243
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 4 cut(s) 130, 447, 485, 763
XceI RCATGY 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 3 cut(s) 167, 507, 536
ZrmI AGTACT 2 cut(s) 82, 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.