Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005446.1

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

52409 .. 57958

Gene Structure 5550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

atgccgtctcttgctcttgttctagcaaaccctagcgacgcggtcaccggtgtcgagcacttggcgcacgatctcggtcgcgctcctccctttcgtgatctcccaacacgatcgcgtgtgttgacctctcctttttgttggtctcctaatgggtacggatctgccatggcagatctcctttggctggtgagaacagccacaaagagggttgctgaagggtggtcttcgggtcggatggggcggaactcagatggactggttgaggtggatagtggcgttatggatgctactagcggcggagatgcatatctagctaggtttggtggtctgcattgcttgggtgcccagatcaggtgcttgcagatgggtgtccagatcagaaggtggcttctcctagatgtgtacagggatttggatttgggatccagaagagtgatgatctctatattctatgaagagcctcggtgtaatcacactatgagtaccacaattgcgtgccttggtgagcagtgtggtgaaagcagggacgagtctgaagttgactggtctgccgattttttgcattcccaaatcgcaaattctgactgctgggaaacccgacctgaaatcgctcatccggccactccacggctgcgtgcggacaccatcatcttcgtctcgccgtcgccagcaaccccttgcccttggatcatccatgcactgaacggaaacggagaatcgactgcgagaagcaacgactgctacaacagttctgtggtgttttccggctactccggtcaccgatttgcttgcatgtggtatggaaattcatccccccgtcatgctctacacgtctgtataattagtttttcaattcgatctagttttgacgaatgcgtttctgggttctttttgtctcctttaccgttcctcgctgctggcgacttctccggctttctagtcttcgcttctccaaccgtgaagctttctggtgctgacgtcacccactttcagggctgggccgagttggcagatgggttggctgggcaagaaaaatgtcaagcctttggcttttttcttggcttcggtcaagaaagtcaggattttgccaggtcaagaagctaccgcaacggtgattgtagagaccccaacagaaacaataatagggatctgcctgagtactcgatcaaagctgcaaatcctcagcctgcagtacagccagtactattcactccaaagcgtagctctacttccaacatgacccaaaaccctgtgttaccattcaaccaccaccatcatcgcatggttccagtaatgtctgatgagcaaggcagaagtagcagtggttgtttttatagtgataaacaaccggcagctggagctcctcggcgaagctgccgatggaatccaaccccggagcagataaaggacctggaagagctgtatcgatctgggatcaagacaccgacggcccaacaaatccgacaggtgactgcgcggcttcgaaactatgggagggttgaaggcaagaatgtattctactggtttcagaaccaccgagccagggagaggcagaagagacgccgtgaactcatctccatgcatcagtctgacactaaacaacagcaacaaactttgattaacagcaatattaccagtctccagaaaaaagaatctgcaggagttagctctgttggtcgtcttgaagttgagcagcaaaataggccgaccctaccaaatttcactgttctttccgatcaggaatcatcttcagtactgcaagagagaatgatgagcatggtgaaaagcaattcctccaggctacctgtggaacaatccgattcacctggaccgacctcatcagacacaaacgcgtcatcagctacattaatttgcacaaagctcttggactttcatcactattatgattatgactacggtatggtattgactgcacccaatatttacaaagaagaagaaaaagacagcaaagaaactcaaactctagagctctttccacttgagagcgacaatcttaagagtgctaagcataccaaattacctatgagcagaacaagcactgcagatttcaaggaagaccaatattattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

696

Amino Acids

77.86

Weight (kDa)

6.85

Isoelectric Point (pI)

63.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	458 - 518	7e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	981
AccB1I	GGYRCC	1 cut(s)	341
AccII	CGCG	5 cut(s)	41, 81, 115, 1477, 1853
AciI	CCGC	7 cut(s)	41, 241, 294, 297, 638, 1105, 1477
AclWI	GGATC	6 cut(s)	166, 417, 430, 695, 1155, 1442
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	3 cut(s)	577, 805, 1717
AcuI	CTGAAG	3 cut(s)	234, 555, 1734
AcyI	GRCGYC	2 cut(s)	978, 1561
AfaI	GTAC	7 cut(s)	155, 404, 484, 1160, 1194, 1203, 1755
AfiI	CCNNNNNNNGG	8 cut(s)	184, 204, 351, 627, 991, 1355, 1543, 1548
AflII	CTTAAG	1 cut(s)	2015
AflIII	ACRYGT	2 cut(s)	829, 1851
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	5 cut(s)	852, 1264, 1502, 1685, 2071
AjiI	CACGTC	1 cut(s)	832
AjnI	CCWGG	5 cut(s)	1088, 1410, 1541, 1796, 1825
Alw21I	GWGCWC	3 cut(s)	60, 1363, 1992
Alw26I	GTCTC	7 cut(s)	12, 147, 661, 900, 1116, 1552, 1643
AlwI	GGATC	6 cut(s)	166, 417, 430, 695, 1155, 1442
AoxI	GGCC	4 cut(s)	618, 999, 1449, 1703
ApeKI	GCWGC	6 cut(s)	631, 914, 1172, 1352, 1374, 1693
ApoI	RAATTY	3 cut(s)	577, 805, 1717
AseI	ATTAAT	1 cut(s)	1868
AsiGI	ACCGGT	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	1514
AspLEI	GCGC	3 cut(s)	67, 83, 1477
AspS9I	GGNCC	4 cut(s)	999, 1408, 1450, 1829
AsuC2I	CCSGG	1 cut(s)	1394
AsuII	TTCGAA	1 cut(s)	1483
AvaII	GGWCC	2 cut(s)	1408, 1829
BaeGI	GKGCMC	1 cut(s)	346
BamHI	GGATCC	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	2 cut(s)	1363, 1992
BarI	GAAGNNNNNNTAC	2 cut(s)	1213, 1245
BbsI	GAAGAC	3 cut(s)	216, 934, 2082
Bbv12I	GWGCWC	3 cut(s)	60, 1363, 1992
BbvCI	CCTCAGC	1 cut(s)	1182
BbvI	GCAGC	6 cut(s)	618, 901, 1159, 1361, 1364, 1705
BccI	CCATC	7 cut(s)	229, 245, 358, 653, 1007, 1281, 1374
BceAI	ACGGC	4 cut(s)	644, 646, 1464, 1548
BcgI	CGANNNNNNTGC	2 cut(s)	771, 805
BciT130I	CCWGG	5 cut(s)	1090, 1412, 1543, 1798, 1827
BcnI	CCSGG	1 cut(s)	1394
BcoDI	GTCTC	7 cut(s)	12, 147, 661, 900, 1116, 1552, 1643
BfaI	CTAG	9 cut(s)	23, 33, 291, 311, 315, 395, 861, 938, 1985
BfmI	CTRYAG	3 cut(s)	1188, 1656, 2061
BfrI	CTTAAG	1 cut(s)	2015
BglI	GCCNNNNNGGC	1 cut(s)	1007
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	8 cut(s)	295, 632, 915, 1173, 1353, 1375, 1478, 1694
BlpI	GCTNAGC	1 cut(s)	2025
BlsI	GCNGC	8 cut(s)	296, 633, 916, 1174, 1354, 1376, 1479, 1695
BmcAI	AGTACT	3 cut(s)	1160, 1203, 1755
Bme1390I	CCNGG	6 cut(s)	1090, 1394, 1412, 1543, 1798, 1827
Bme18I	GGWCC	2 cut(s)	1408, 1829
BmgBI	CACGTC	1 cut(s)	832
BmgT120I	GGNCC	4 cut(s)	999, 1408, 1450, 1829
BmiI	GGNNCC	3 cut(s)	343, 424, 1287
BmrFI	CCNGG	6 cut(s)	1090, 1394, 1412, 1543, 1798, 1827
BmsI	GCATC	3 cut(s)	274, 292, 1591
BpiI	GAAGAC	3 cut(s)	216, 934, 2082
BpmI	CTGGAG	3 cut(s)	1377, 1625, 1780
Bpu10I	CCTNAGC	1 cut(s)	1182
Bpu1102I	GCTNAGC	1 cut(s)	2025
Bpu14I	TTCGAA	1 cut(s)	1483
BpuEI	CTTGAG	1 cut(s)	2021
BpuMI	CCSGG	1 cut(s)	1394
Bsa29I	ATCGAT	1 cut(s)	1426
BsaBI	GATNNNNATC	1 cut(s)	306
BsaHI	GRCGYC	2 cut(s)	978, 1561
BsaI	GGTCTC	2 cut(s)	147, 1116
BsaJI	CCNNGG	8 cut(s)	165, 461, 499, 626, 683, 1364, 1392, 1542
BsaWI	WCCGGW	2 cut(s)	47, 773
Bsc4I	CCNNNNNNNGG	8 cut(s)	184, 204, 351, 627, 991, 1355, 1543, 1548
Bse118I	RCCGGY	2 cut(s)	47, 1348
Bse1I	ACTGG	6 cut(s)	261, 548, 1199, 1289, 1526, 1635
Bse3DI	GCAATG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	5 cut(s)	1090, 1412, 1543, 1798, 1827
BseCI	ATCGAT	1 cut(s)	1426
BseDI	CCNNGG	8 cut(s)	165, 461, 499, 626, 683, 1364, 1392, 1542
BseGI	GGATG	5 cut(s)	240, 289, 613, 690, 809
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	8 cut(s)	184, 204, 351, 627, 991, 1355, 1543, 1548
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	3 cut(s)	261, 1146, 1196
BseNI	ACTGG	6 cut(s)	261, 548, 1199, 1289, 1526, 1635
BseRI	GAGGAG	2 cut(s)	75, 1353
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	6 cut(s)	618, 901, 1159, 1361, 1364, 1705
BseYI	CCCAGC	3 cut(s)	588, 996, 1022
BsgI	GTGCAG	1 cut(s)	1917
Bsh1236I	CGCG	5 cut(s)	41, 81, 115, 1477, 1853
Bsh1285I	CGRYCG	2 cut(s)	79, 113
BshFI	GGCC	4 cut(s)	620, 1001, 1451, 1705
BshNI	GGYRCC	1 cut(s)	341
BshTI	ACCGGT	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	1426
BsiEI	CGRYCG	2 cut(s)	79, 113
BsiHKAI	GWGCWC	3 cut(s)	60, 1363, 1992
BsiSI	CCGG	7 cut(s)	48, 617, 765, 774, 930, 1349, 1394
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	8 cut(s)	184, 204, 351, 627, 991, 1355, 1543, 1548
BsmAI	GTCTC	7 cut(s)	12, 147, 661, 900, 1116, 1552, 1643
BsmBI	CGTCTC	3 cut(s)	12, 661, 1552
BsmFI	GGGAC	1 cut(s)	539
BsmI	GAATGC	2 cut(s)	562, 878
BsnI	GGCC	4 cut(s)	620, 1001, 1451, 1705
Bso31I	GGTCTC	2 cut(s)	147, 1116
Bsp119I	TTCGAA	1 cut(s)	1483
Bsp1286I	GDGCHC	4 cut(s)	60, 346, 1363, 1992
Bsp1407I	TGTACA	1 cut(s)	402
Bsp1720I	GCTNAGC	1 cut(s)	2025
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	7 cut(s)	41, 241, 294, 297, 638, 1105, 1477
BspANI	GGCC	4 cut(s)	620, 1001, 1451, 1705
BspCNI	CTCAG	3 cut(s)	260, 1147, 1195
BspDI	ATCGAT	1 cut(s)	1426
BspFNI	CGCG	5 cut(s)	41, 81, 115, 1477, 1853
BspLI	GGNNCC	3 cut(s)	343, 424, 1287
BspMAI	CTGCAG	3 cut(s)	1192, 1660, 2065
BspPI	GGATC	6 cut(s)	166, 417, 430, 695, 1155, 1442
BspQI	GCTCTTC	2 cut(s)	450, 1410
BspT104I	TTCGAA	1 cut(s)	1483
BspT107I	GGYRCC	1 cut(s)	341
BspTI	CTTAAG	1 cut(s)	2015
BspTNI	GGTCTC	2 cut(s)	147, 1116
BsrDI	GCAATG	1 cut(s)	331
BsrFI	RCCGGY	2 cut(s)	47, 1348
BsrGI	TGTACA	1 cut(s)	402
BsrI	ACTGG	6 cut(s)	261, 548, 1199, 1289, 1526, 1635
BssAI	RCCGGY	2 cut(s)	47, 1348
BssECI	CCNNGG	8 cut(s)	165, 461, 499, 626, 683, 1364, 1392, 1542
BssNI	GRCGYC	2 cut(s)	978, 1561
BssT1I	CCWWGG	3 cut(s)	165, 499, 683
Bst2UI	CCWGG	5 cut(s)	1090, 1412, 1543, 1798, 1827
Bst4CI	ACNGT	6 cut(s)	749, 906, 958, 1112, 1726, 1919
Bst6I	CTCTTC	4 cut(s)	424, 450, 1410, 1550
BstACI	GRCGYC	2 cut(s)	978, 1561
BstAFI	CTTAAG	1 cut(s)	2015
BstAPI	GCANNNNNTGC	1 cut(s)	738
BstAUI	TGTACA	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	1483
BstC8I	GCNNGC	7 cut(s)	359, 496, 636, 669, 790, 919, 1188
BstDEI	CTNAG	4 cut(s)	247, 1155, 1182, 2025
BstDSI	CCRYGG	2 cut(s)	165, 626
BstEII	GGTNACC	2 cut(s)	43, 776
BstF5I	GGATG	5 cut(s)	240, 289, 613, 690, 809
BstFNI	CGCG	5 cut(s)	41, 81, 115, 1477, 1853
BstHHI	GCGC	3 cut(s)	67, 83, 1477
BstMAI	GTCTC	7 cut(s)	12, 147, 661, 900, 1116, 1552, 1643
BstMCI	CGRYCG	2 cut(s)	79, 113
BstNI	CCWGG	5 cut(s)	1090, 1412, 1543, 1798, 1827
BstNSI	RCATGY	1 cut(s)	796
BstPI	GGTNACC	2 cut(s)	43, 776
BstSCI	CCNGG	6 cut(s)	1088, 1392, 1410, 1541, 1796, 1825
BstSFI	CTRYAG	3 cut(s)	1188, 1656, 2061
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	5 cut(s)	41, 81, 115, 1477, 1853
BstV1I	GCAGC	6 cut(s)	618, 901, 1159, 1361, 1364, 1705
BstV2I	GAAGAC	3 cut(s)	216, 934, 2082
BstX2I	RGATCY	4 cut(s)	158, 172, 422, 1147
BstYI	RGATCY	4 cut(s)	158, 172, 422, 1147
Bsu15I	ATCGAT	1 cut(s)	1426
BsuRI	GGCC	4 cut(s)	620, 1001, 1451, 1705
BsuTUI	ATCGAT	1 cut(s)	1426
BtgI	CCRYGG	2 cut(s)	165, 626
BtgZI	GCGATG	1 cut(s)	1262
BtrI	CACGTC	1 cut(s)	832
BtsCI	GGATG	5 cut(s)	240, 289, 613, 690, 809
BtsI	GCAGTG	3 cut(s)	515, 1327, 2058
BtsIMutI	CAGTG	5 cut(s)	515, 698, 1327, 1722, 2058
Cac8I	GCNNGC	7 cut(s)	359, 496, 636, 669, 790, 919, 1188
CfoI	GCGC	3 cut(s)	67, 83, 1477
Cfr10I	RCCGGY	2 cut(s)	47, 1348
Cfr13I	GGNCC	4 cut(s)	999, 1408, 1450, 1829
ClaI	ATCGAT	1 cut(s)	1426
CseI	GACGC	3 cut(s)	47, 1569, 1842
Csp6I	GTAC	7 cut(s)	154, 403, 483, 1159, 1193, 1202, 1754
CspAI	ACCGGT	1 cut(s)	47
CviAII	CATG	8 cut(s)	166, 695, 793, 821, 1237, 1282, 1579, 1777
CviQI	GTAC	7 cut(s)	154, 403, 483, 1159, 1193, 1202, 1754
DdeI	CTNAG	4 cut(s)	247, 1155, 1182, 2025
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	4 cut(s)	424, 450, 1410, 1550
EarI	CTCTTC	4 cut(s)	424, 450, 1410, 1550
EciI	GGCGGA	2 cut(s)	256, 312
Ecl136II	GAGCTC	2 cut(s)	1361, 1990
Eco130I	CCWWGG	3 cut(s)	165, 499, 683
Eco24I	GRGCYC	2 cut(s)	1363, 1992
Eco31I	GGTCTC	2 cut(s)	147, 1116
Eco47I	GGWCC	2 cut(s)	1408, 1829
Eco53kI	GAGCTC	2 cut(s)	1361, 1990
Eco57I	CTGAAG	3 cut(s)	234, 555, 1734
Eco91I	GGTNACC	2 cut(s)	43, 776
EcoICRI	GAGCTC	2 cut(s)	1361, 1990
EcoO109I	RGGNCCY	1 cut(s)	1408
EcoO65I	GGTNACC	2 cut(s)	43, 776
EcoRII	CCWGG	5 cut(s)	1088, 1410, 1541, 1796, 1825
EcoT14I	CCWWGG	3 cut(s)	165, 499, 683
EcoT22I	ATGCAT	2 cut(s)	307, 1584
EcoT38I	GRGCYC	2 cut(s)	1363, 1992
ErhI	CCWWGG	3 cut(s)	165, 499, 683
Esp3I	CGTCTC	3 cut(s)	12, 661, 1552
FaeI	CATG	8 cut(s)	169, 698, 796, 824, 1240, 1285, 1582, 1780
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	8 cut(s)	165, 694, 792, 820, 1236, 1281, 1578, 1776
Fnu4HI	GCNGC	8 cut(s)	295, 632, 915, 1173, 1353, 1375, 1478, 1694
FokI	GGATG	5 cut(s)	247, 296, 600, 677, 796
FriOI	GRGCYC	2 cut(s)	1363, 1992
Fsp4HI	GCNGC	8 cut(s)	295, 632, 915, 1173, 1353, 1375, 1478, 1694
FspBI	CTAG	9 cut(s)	23, 33, 291, 311, 315, 395, 861, 938, 1985
GlaI	GCGC	3 cut(s)	66, 82, 1476
GluI	GCNGC	8 cut(s)	295, 632, 915, 1173, 1353, 1375, 1478, 1694
GsaI	CCCAGC	3 cut(s)	592, 1000, 1026
GsuI	CTGGAG	3 cut(s)	1377, 1625, 1780
HaeIII	GGCC	4 cut(s)	620, 1001, 1451, 1705
HapII	CCGG	7 cut(s)	48, 617, 765, 774, 930, 1349, 1394
HgaI	GACGC	3 cut(s)	47, 1569, 1842
HhaI	GCGC	3 cut(s)	67, 83, 1477
Hin1I	GRCGYC	2 cut(s)	978, 1561
Hin1II	CATG	8 cut(s)	169, 698, 796, 824, 1240, 1285, 1582, 1780
Hin6I	GCGC	3 cut(s)	65, 81, 1475
HinP1I	GCGC	3 cut(s)	65, 81, 1475
HincII	GTYRAC	2 cut(s)	123, 541
HindII	GTYRAC	2 cut(s)	123, 541
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	6 cut(s)	530, 716, 1384, 1652, 1742, 1820
HpaII	CCGG	7 cut(s)	48, 617, 765, 774, 930, 1349, 1394
Hpy166II	GTNNAC	4 cut(s)	123, 403, 541, 1568
Hpy8I	GTNNAC	4 cut(s)	123, 403, 541, 1568
Hpy99I	CGWCG	3 cut(s)	41, 667, 1450
HpyAV	CCTTC	3 cut(s)	209, 375, 1496
HpyCH4III	ACNGT	6 cut(s)	749, 906, 958, 1112, 1726, 1919
HpyCH4IV	ACGT	2 cut(s)	831, 978
HpyF3I	CTNAG	4 cut(s)	247, 1155, 1182, 2025
HpySE526I	ACGT	2 cut(s)	831, 978
Hsp92I	GRCGYC	2 cut(s)	978, 1561
Hsp92II	CATG	8 cut(s)	169, 698, 796, 824, 1240, 1285, 1582, 1780
HspAI	GCGC	3 cut(s)	65, 81, 1475
LguI	GCTCTTC	2 cut(s)	450, 1410
LmnI	GCTCC	4 cut(s)	88, 1358, 1366, 1396
Lsp1109I	GCAGC	6 cut(s)	618, 901, 1159, 1361, 1364, 1705
LweI	GCATC	3 cut(s)	274, 292, 1591
MaeI	CTAG	9 cut(s)	23, 33, 291, 311, 315, 395, 861, 938, 1985
MaeII	ACGT	2 cut(s)	831, 978
MaeIII	GTNAC	5 cut(s)	43, 776, 979, 1254, 1468
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	4 cut(s)	158, 172, 422, 1147
MhlI	GDGCHC	4 cut(s)	60, 346, 1363, 1992
MluCI	AATT	9 cut(s)	489, 577, 805, 840, 852, 1717, 1789, 1869, 2036
MluI	ACGCGT	1 cut(s)	1851
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	5 cut(s)	212, 977, 1257, 1412, 1486
Mph1103I	ATGCAT	2 cut(s)	307, 1584
MroXI	GAANNNNTTC	1 cut(s)	1514
MseI	TTAA	3 cut(s)	1620, 1868, 2016
MslI	CAYNNNNRTG	2 cut(s)	1577, 1902
MspA1I	CMGCKG	1 cut(s)	1355
MspCI	CTTAAG	1 cut(s)	2015
MspI	CCGG	7 cut(s)	48, 617, 765, 774, 930, 1349, 1394
MspR9I	CCNGG	6 cut(s)	1090, 1394, 1412, 1543, 1798, 1827
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	2 cut(s)	562, 878
MvaI	CCWGG	5 cut(s)	1090, 1412, 1543, 1798, 1827
MvnI	CGCG	5 cut(s)	41, 81, 115, 1477, 1853
NciI	CCSGG	1 cut(s)	1394
NcoI	CCATGG	1 cut(s)	165
NlaIII	CATG	8 cut(s)	169, 698, 796, 824, 1240, 1285, 1582, 1780
NlaIV	GGNNCC	3 cut(s)	343, 424, 1287
NmeAIII	GCCGAG	2 cut(s)	1027, 1345
NmuCI	GTSAC	4 cut(s)	43, 776, 979, 1468
NsiI	ATGCAT	2 cut(s)	307, 1584
NspI	RCATGY	1 cut(s)	796
NspV	TTCGAA	1 cut(s)	1483
PciSI	GCTCTTC	2 cut(s)	450, 1410
PcsI	WCGNNNNNNNCGW	1 cut(s)	918
PctI	GAATGC	2 cut(s)	562, 878
PdmI	GAANNNNTTC	1 cut(s)	1514
PfeI	GAWTC	5 cut(s)	716, 1384, 1652, 1742, 1820
PflFI	GACNNNGTC	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	8 cut(s)	296, 633, 916, 1174, 1354, 1376, 1479, 1695
Ple19I	CGATCG	1 cut(s)	113
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PpuMI	RGGWCCY	1 cut(s)	1408
PshBI	ATTAAT	1 cut(s)	1868
Psp124BI	GAGCTC	2 cut(s)	1363, 1992
Psp5II	RGGWCCY	1 cut(s)	1408
Psp6I	CCWGG	5 cut(s)	1088, 1410, 1541, 1796, 1825
PspEI	GGTNACC	2 cut(s)	43, 776
PspFI	CCCAGC	3 cut(s)	588, 996, 1022
PspGI	CCWGG	5 cut(s)	1088, 1410, 1541, 1796, 1825
PspN4I	GGNNCC	3 cut(s)	343, 424, 1287
PspPI	GGNCC	4 cut(s)	999, 1408, 1450, 1829
PspPPI	RGGWCCY	1 cut(s)	1408
PstI	CTGCAG	3 cut(s)	1192, 1660, 2065
PsuI	RGATCY	4 cut(s)	158, 172, 422, 1147
PsyI	GACNNNGTC	1 cut(s)	41
PvuI	CGATCG	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	1355
RsaI	GTAC	7 cut(s)	155, 404, 484, 1160, 1194, 1203, 1755
RsaNI	GTAC	7 cut(s)	154, 403, 483, 1159, 1193, 1202, 1754
RseI	CAYNNNNRTG	2 cut(s)	1577, 1902
SacI	GAGCTC	2 cut(s)	1363, 1992
SapI	GCTCTTC	2 cut(s)	450, 1410
SaqAI	TTAA	3 cut(s)	1620, 1868, 2016
SatI	GCNGC	8 cut(s)	295, 632, 915, 1173, 1353, 1375, 1478, 1694
Sau96I	GGNCC	4 cut(s)	999, 1408, 1450, 1829
ScaI	AGTACT	3 cut(s)	1160, 1203, 1755
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	6 cut(s)	1090, 1394, 1412, 1543, 1798, 1827
SduI	GDGCHC	4 cut(s)	60, 346, 1363, 1992
SfaNI	GCATC	3 cut(s)	274, 292, 1591
SfcI	CTRYAG	3 cut(s)	1188, 1656, 2061
SfuI	TTCGAA	1 cut(s)	1483
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	1408, 1829
SmiMI	CAYNNNNRTG	2 cut(s)	1577, 1902
SmlI	CTYRAG	2 cut(s)	2000, 2015
SmoI	CTYRAG	2 cut(s)	2000, 2015
Sse9I	AATT	9 cut(s)	489, 577, 805, 840, 852, 1717, 1789, 1869, 2036
SsiI	CCGC	7 cut(s)	41, 241, 294, 297, 638, 1105, 1477
SspI	AATATT	3 cut(s)	1630, 1942, 2084
SspMI	CTAG	9 cut(s)	23, 33, 291, 311, 315, 395, 861, 938, 1985
SstI	GAGCTC	2 cut(s)	1363, 1992
StyD4I	CCNGG	6 cut(s)	1088, 1392, 1410, 1541, 1796, 1825
StyI	CCWWGG	3 cut(s)	165, 499, 683
TaaI	ACNGT	6 cut(s)	749, 906, 958, 1112, 1726, 1919
TaiI	ACGT	2 cut(s)	834, 981
TaqI	TCGA	6 cut(s)	54, 719, 856, 1163, 1426, 1483
TaqII	GACCGA	3 cut(s)	65, 1055, 1846
TasI	AATT	9 cut(s)	489, 577, 805, 840, 852, 1717, 1789, 1869, 2036
TatI	WGTACW	5 cut(s)	402, 1158, 1192, 1201, 1753
TauI	GCSGC	2 cut(s)	297, 1480
TfiI	GAWTC	5 cut(s)	716, 1384, 1652, 1742, 1820
Tru1I	TTAA	3 cut(s)	1620, 1868, 2016
Tru9I	TTAA	3 cut(s)	1620, 1868, 2016
TscAI	CASTG	5 cut(s)	515, 705, 1327, 1729, 2065
TseFI	GTSAC	4 cut(s)	43, 776, 979, 1468
TseI	GCWGC	6 cut(s)	631, 914, 1172, 1352, 1374, 1693
Tsp45I	GTSAC	4 cut(s)	43, 776, 979, 1468
TspDTI	ATGAA	3 cut(s)	468, 798, 1883
TspGWI	ACGGA	3 cut(s)	171, 720, 726
TspRI	CASTG	5 cut(s)	515, 705, 1327, 1729, 2065
Tth111I	GACNNNGTC	1 cut(s)	41
Vha464I	CTTAAG	1 cut(s)	2015
VpaK11BI	GGWCC	2 cut(s)	1408, 1829
VspI	ATTAAT	1 cut(s)	1868
XapI	RAATTY	3 cut(s)	577, 805, 1717
XbaI	TCTAGA	1 cut(s)	1984
XceI	RCATGY	1 cut(s)	796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1804
XmnI	GAANNNNTTC	1 cut(s)	1514
XspI	CTAG	9 cut(s)	23, 33, 291, 311, 315, 395, 861, 938, 1985
ZraI	GACGTC	1 cut(s)	979
ZrmI	AGTACT	3 cut(s)	1160, 1203, 1755
Zsp2I	ATGCAT	2 cut(s)	307, 1584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.