Rmu_sc0007075.1_g000015

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007075.1
OG0002404
Physical Location & Seq
Reverse (-)
66733 .. 71376
4644 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
atggaggccacgatgcccatttgcaagactgttactccaactccatgcaaggaacagatcgactggaagcgccgttatggcaagtacaagccccgaaagaaaccgaggtcggcggaggttgaagccgagcaaaaggagctccaagaggctatcaaaaatgtaagagaaaggatagaagactctgctacgagctttggttggagtgatcgaatccaattccacactccccctgtgggaggatctgatgagctcaaatttcttgcatttggcgacatgggaaaggctcctcgtgattcttctgtcgagcattatattcaggtatatgaattggactatatagaatctggatcagtgtacattcttgcagattcaggtggggaagttggagttccctatgagacttactttccaatgccaaccccagcaaaggataaaccatggtattccatagaacaaggaagcgtccacatcacgatgatttcaacagagcatgactggaccaaaaattttgagcagtatcaatggatgaaaaaggatatggcttcagttgatcgatctaaaactccttggttgatatttatggggcatagaccaatgtatacatctgcccctggattcctgagtgttgatgagaaattcgttgacaaagttgaaccattacttctggcaagcaaagttgatctggcgctgtttggtcatgtccataactacgagcgaacctgctccatttataagatccaatgcatgaaattgccttgcaaagttaaggctgggatcgacacatatgatcacagcaactacagtgccccagtgcaagccataattggaatggctggcttttccttggacaagtttccaagtggtgtaagtccttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

292

Amino Acids

33.21

Weight (kDa)

6.26

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 164 - 237 1.5e-07 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 732
Acc36I ACCTGC 1 cut(s) 728
AccI GTMKAC 1 cut(s) 599
AciI CCGC 1 cut(s) 113
AclWI GGATC 4 cut(s) 247, 355, 730, 782
AcsI RAATTY 3 cut(s) 254, 505, 635
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 2 cut(s) 86, 356
AfiI CCNNNNNNNGG 3 cut(s) 233, 236, 427
AgsI TTSAA 3 cut(s) 122, 483, 653
AjnI CCWGG 1 cut(s) 610
AluBI AGCT 3 cut(s) 139, 192, 250
AluI AGCT 3 cut(s) 139, 192, 250
Alw21I GWGCWC 2 cut(s) 141, 252
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 4 cut(s) 247, 355, 730, 782
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 3 cut(s) 254, 505, 635
AspLEI GCGC 2 cut(s) 72, 688
AspS9I GGNCC 1 cut(s) 498
AvaII GGWCC 1 cut(s) 498
BaeGI GKGCMC 1 cut(s) 808
BanII GRGCYC 2 cut(s) 141, 252
BauI CACGAG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 141, 252
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 612
BclI TGATCA 1 cut(s) 787
BcoDI GTCTC 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 799
BfoI RGCGCY 2 cut(s) 73, 689
BfuAI ACCTGC 1 cut(s) 728
BglI GCCNNNNNGGC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 612
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 612
BmrI ACTGGG 1 cut(s) 803
BmsI GCATC 1 cut(s) 3
BmuI ACTGGG 1 cut(s) 803
BpiI GAAGAC 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 553
BsaJI CCNNGG 5 cut(s) 104, 437, 566, 610, 843
BsaXI ACNNNNNCTCC 4 cut(s) 19, 25, 49, 55
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 236, 427
Bse1I ACTGG 3 cut(s) 68, 500, 809
BseBI CCWGG 1 cut(s) 612
BseCI ATCGAT 1 cut(s) 553
BseDI CCNNGG 5 cut(s) 104, 437, 566, 610, 843
BseGI GGATG 1 cut(s) 531
BseLI CCNNNNNNNGG 3 cut(s) 233, 236, 427
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 3 cut(s) 68, 500, 809
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 808
BseYI CCCAGC 2 cut(s) 421, 770
BshFI GGCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 553
BsiHKAI GWGCWC 2 cut(s) 141, 252
BslI CCNNNNNNNGG 3 cut(s) 233, 236, 427
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 3 cut(s) 141, 252, 808
Bsp1407I TGTACA 1 cut(s) 354
Bsp19I CCATGG 1 cut(s) 437
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 612
BspDI ATCGAT 1 cut(s) 553
BspLI GGNNCC 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 728
BspPI GGATC 4 cut(s) 247, 355, 730, 782
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 3 cut(s) 68, 500, 809
BssECI CCNNGG 5 cut(s) 104, 437, 566, 610, 843
BssNAI GTATAC 1 cut(s) 600
BssSI CACGAG 1 cut(s) 288
BssT1I CCWWGG 3 cut(s) 437, 566, 843
Bst1107I GTATAC 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 2 cut(s) 31, 803
BstAUI TGTACA 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 670, 816, 835
BstDEI CTNAG 1 cut(s) 620
BstDSI CCRYGG 1 cut(s) 437
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 531
BstH2I RGCGCY 2 cut(s) 73, 689
BstHHI GCGC 2 cut(s) 72, 688
BstMAI GTCTC 1 cut(s) 392
BstMWI GCNNNNNNNGC 2 cut(s) 78, 136
BstNI CCWGG 1 cut(s) 612
BstSCI CCNGG 1 cut(s) 610
BstSFI CTRYAG 1 cut(s) 799
BstSLI GKGCMC 1 cut(s) 808
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 239, 735
BstYI RGATCY 2 cut(s) 239, 735
BstZ17I GTATAC 1 cut(s) 600
Bsu15I ATCGAT 1 cut(s) 553
BsuRI GGCC 1 cut(s) 8
BsuTUI ATCGAT 1 cut(s) 553
BtgI CCRYGG 1 cut(s) 437
BtsCI GGATG 1 cut(s) 531
BtsIMutI CAGTG 3 cut(s) 357, 808, 816
BveI ACCTGC 1 cut(s) 728
Cac8I GCNNGC 3 cut(s) 670, 816, 835
CfoI GCGC 2 cut(s) 72, 688
Cfr13I GGNCC 1 cut(s) 498
ClaI ATCGAT 1 cut(s) 553
CseI GACGC 1 cut(s) 451
Csp6I GTAC 2 cut(s) 85, 355
CviAII CATG 6 cut(s) 45, 274, 438, 491, 698, 745
CviQI GTAC 2 cut(s) 85, 355
DdeI CTNAG 1 cut(s) 620
EciI GGCGGA 1 cut(s) 128
Ecl136II GAGCTC 2 cut(s) 139, 250
Eco130I CCWWGG 3 cut(s) 437, 566, 843
Eco24I GRGCYC 2 cut(s) 141, 252
Eco47I GGWCC 1 cut(s) 498
Eco53kI GAGCTC 2 cut(s) 139, 250
Eco57I CTGAAG 1 cut(s) 528
EcoICRI GAGCTC 2 cut(s) 139, 250
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 3 cut(s) 437, 566, 843
EcoT22I ATGCAT 1 cut(s) 746
EcoT38I GRGCYC 2 cut(s) 141, 252
ErhI CCWWGG 3 cut(s) 437, 566, 843
FaeI CATG 6 cut(s) 48, 277, 441, 494, 701, 748
FalI AAGNNNNNCTT 1 cut(s) 859
FatI CATG 6 cut(s) 44, 273, 437, 490, 697, 744
FauNDI CATATG 1 cut(s) 784
FbaI TGATCA 1 cut(s) 787
FblI GTMKAC 1 cut(s) 599
FokI GGATG 1 cut(s) 538
FriOI GRGCYC 2 cut(s) 141, 252
GlaI GCGC 2 cut(s) 71, 687
GsaI CCCAGC 2 cut(s) 425, 774
HaeII RGCGCY 2 cut(s) 73, 689
HaeIII GGCC 1 cut(s) 8
HgaI GACGC 1 cut(s) 451
HhaI GCGC 2 cut(s) 72, 688
Hin1II CATG 6 cut(s) 48, 277, 441, 494, 701, 748
Hin6I GCGC 2 cut(s) 70, 686
HinP1I GCGC 2 cut(s) 70, 686
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HinfI GANTC 6 cut(s) 179, 210, 293, 341, 368, 615
Hpy166II GTNNAC 4 cut(s) 355, 466, 600, 643
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 5 cut(s) 290, 345, 472, 619, 876
Hpy8I GTNNAC 4 cut(s) 355, 466, 600, 643
HpyCH4III ACNGT 2 cut(s) 31, 803
HpyCH4V TGCA 7 cut(s) 24, 48, 263, 365, 744, 759, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 136
HpyF3I CTNAG 1 cut(s) 620
Hsp92II CATG 6 cut(s) 48, 277, 441, 494, 701, 748
HspAI GCGC 2 cut(s) 70, 686
Ksp22I TGATCA 1 cut(s) 787
LmnI GCTCC 4 cut(s) 136, 144, 289, 728
LweI GCATC 1 cut(s) 3
MaeIII GTNAC 1 cut(s) 31
MboII GAAGA 2 cut(s) 188, 288
MflI RGATCY 2 cut(s) 239, 735
MhlI GDGCHC 3 cut(s) 141, 252, 808
MluCI AATT 7 cut(s) 215, 254, 326, 505, 635, 749, 822
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 3 cut(s) 62, 179, 364
MnlI CCTC 5 cut(s) 99, 109, 139, 230, 297
Mph1103I ATGCAT 1 cut(s) 746
MseI TTAA 1 cut(s) 765
MslI CAYNNNNRTG 1 cut(s) 473
MspR9I CCNGG 1 cut(s) 612
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 2 cut(s) 78, 136
NcoI CCATGG 1 cut(s) 437
NdeI CATATG 1 cut(s) 784
NlaIII CATG 6 cut(s) 48, 277, 441, 494, 701, 748
NlaIV GGNNCC 1 cut(s) 285
NmeAIII GCCGAG 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 746
PfeI GAWTC 5 cut(s) 210, 293, 341, 368, 615
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PsiI TTATAA 1 cut(s) 732
Psp124BI GAGCTC 2 cut(s) 141, 252
Psp6I CCWGG 1 cut(s) 610
PspFI CCCAGC 2 cut(s) 421, 770
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 498
PsuI RGATCY 2 cut(s) 239, 735
RsaI GTAC 2 cut(s) 86, 356
RsaNI GTAC 2 cut(s) 85, 355
RseI CAYNNNNRTG 1 cut(s) 473
SacI GAGCTC 2 cut(s) 141, 252
SaqAI TTAA 1 cut(s) 765
Sau96I GGNCC 1 cut(s) 498
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 612
SduI GDGCHC 3 cut(s) 141, 252, 808
SetI ASST 8 cut(s) 110, 120, 141, 194, 252, 321, 376, 722
SfaNI GCATC 1 cut(s) 3
SfcI CTRYAG 1 cut(s) 799
SinI GGWCC 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 7 cut(s) 215, 254, 326, 505, 635, 749, 822
SsiI CCGC 1 cut(s) 113
SstI GAGCTC 2 cut(s) 141, 252
StyD4I CCNGG 1 cut(s) 610
StyI CCWWGG 3 cut(s) 437, 566, 843
TaaI ACNGT 2 cut(s) 31, 803
TaqI TCGA 5 cut(s) 60, 208, 303, 553, 777
TasI AATT 7 cut(s) 215, 254, 326, 505, 635, 749, 822
TatI WGTACW 2 cut(s) 84, 354
TfiI GAWTC 5 cut(s) 210, 293, 341, 368, 615
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 3 cut(s) 357, 808, 816
TspDTI ATGAA 3 cut(s) 339, 542, 761
TspRI CASTG 3 cut(s) 357, 808, 816
VpaK11BI GGWCC 1 cut(s) 498
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 3 cut(s) 254, 505, 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 599
Zsp2I ATGCAT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.