Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

6192033 .. 6194093

Gene Structure 2061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAGACTAAACAGAGTATCCCTCTCCTCATGCCCTATAAGATGGGACCCTTCAATCTTTCTCACAGGGTTGTTTTGGCGCCATTGACTAGATCGAGATCGTATGGTAACATTCCTCAGCCTAATGCCAAATTATATTACACTCAGAGAACAACACCTGGTGGTCTTCTTATTTCCGAATCCTGTGTAGTCTCCGAGACATCATTGGGCTATCCGGATTTACCTGGATTATGGAACAGAGACCAAGTGGAGGCATGGAAGCCCATCGTGGATGCGGTTCATTCGAAAGGCGGTATCTTCTTCTGCCAGATTTGGCATGGTGGCAGAGTTTTTCATCAAGACCAGCCAAATGGGGAAGCACCCGTCTCCTCTACAGACAAGCCATTGATGTGCAAGAACATGTATGGAGGTCAGTTTAAGCCTCCACGGCGGTTAAGGAGCGACGAGCTTCCCGCCATTGTCAACGACTTTAGAATCGCTGCACGAAACGCGATCGAAGCTGGCTTCGATGGAGTGGAGGTTCACGGCGCACATGGTTACCTGATCGATCAGTTCCTGAAAGACAAAGTGAATGACAGAAGTGACCAATATGGTGGGTCATTAGAGAACCGCTGTAGATTTGCTCTTGAAGTAATCGAAGCAGTGGTGAACGAGATCGGTTCAGATCGTGTTGGAATCAGACTCTCGCCATTTGCAGATTACATGGAGTCAGGAGACTCGAATCCAGAAGCATTAGGGCTCTACCTGGTGCAAGCTATGAACAAGCATGGCATGGAGTCGTCTACGGTCACATGGTTGAACCTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

269

Amino Acids

29.97

Weight (kDa)

6.0

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	22 - 250	2.9e-65	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	782
AccII	CGCG	1 cut(s)	491
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	5 cut(s)	275, 291, 430, 453, 610
AcyI	GRCGYC	1 cut(s)	80
AdeI	CACNNNGTG	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	55, 629, 799
AjnI	CCWGG	3 cut(s)	157, 223, 744
AloI	GAACNNNNNNTCC	2 cut(s)	504, 536
AluBI	AGCT	3 cut(s)	448, 500, 755
AluI	AGCT	3 cut(s)	448, 500, 755
Alw26I	GTCTC	5 cut(s)	191, 196, 234, 370, 708
AlwNI	CAGNNNCTG	1 cut(s)	556
Aor13HI	TCCGGA	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	479
AspLEI	GCGC	2 cut(s)	82, 530
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	658
AsuII	TTCGAA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	741
BbsI	GAAGAC	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	3 cut(s)	37, 272, 503
BceAI	ACGGC	2 cut(s)	443, 541
BciT130I	CCWGG	3 cut(s)	159, 225, 746
BciVI	GTATCC	1 cut(s)	29
BcoDI	GTCTC	5 cut(s)	191, 196, 234, 370, 708
BfaI	CTAG	2 cut(s)	90, 803
BfmI	CTRYAG	2 cut(s)	372, 613
BfoI	RGCGCY	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	29
BglI	GCCNNNNNGGC	1 cut(s)	427
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
Bme1390I	CCNGG	3 cut(s)	159, 225, 746
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	3 cut(s)	48, 49, 81
BmrFI	CCNGG	3 cut(s)	159, 225, 746
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	546
BsaBI	GATNNNNATC	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	3 cut(s)	159, 225, 746
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	277
BseJI	GATNNNNATC	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	131, 158
BseRI	GAGGAG	2 cut(s)	17, 358
BseXI	GCAGC	1 cut(s)	466
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	495
BshNI	GGYRCC	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	546
BsiEI	CGRYCG	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	5 cut(s)	191, 196, 234, 370, 708
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	60
Bso31I	GGTCTC	1 cut(s)	234
Bsp119I	TTCGAA	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	7 cut(s)	92, 98, 492, 543, 547, 654, 664
BspACI	CCGC	5 cut(s)	275, 291, 430, 453, 610
BspCNI	CTCAG	2 cut(s)	130, 157
BspDI	ATCGAT	1 cut(s)	546
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	3 cut(s)	48, 49, 81
BspT104I	TTCGAA	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	7 cut(s)	92, 98, 492, 543, 547, 654, 664
BssNI	GRCGYC	1 cut(s)	80
Bst2UI	CCWGG	3 cut(s)	159, 225, 746
Bst4CI	ACNGT	1 cut(s)	787
BstACI	GRCGYC	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	502, 753
BstDEI	CTNAG	2 cut(s)	117, 144
BstDSI	CCRYGG	1 cut(s)	425
BstEII	GGTNACC	1 cut(s)	536
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	491
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	2 cut(s)	82, 530
BstKTI	GATC	7 cut(s)	95, 101, 495, 546, 550, 657, 667
BstMAI	GTCTC	5 cut(s)	191, 196, 234, 370, 708
BstMBI	GATC	7 cut(s)	92, 98, 492, 543, 547, 654, 664
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	3 cut(s)	427, 488, 497
BstNI	CCWGG	3 cut(s)	159, 225, 746
BstNSI	RCATGY	1 cut(s)	403
BstPI	GGTNACC	1 cut(s)	536
BstSCI	CCNGG	3 cut(s)	157, 223, 744
BstSFI	CTRYAG	2 cut(s)	372, 613
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	1 cut(s)	158
BstXI	CCANNNNNNTGG	2 cut(s)	350, 593
Bsu15I	ATCGAT	1 cut(s)	546
BsuI	GTATCC	1 cut(s)	29
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	2 cut(s)	502, 753
CaiI	CAGNNNCTG	1 cut(s)	556
CfoI	GCGC	2 cut(s)	82, 530
Cfr13I	GGNCC	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	546
CsiI	ACCWGGT	2 cut(s)	157, 744
CviAII	CATG	9 cut(s)	31, 255, 317, 400, 533, 703, 767, 772, 792
DdeI	CTNAG	2 cut(s)	117, 144
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	7 cut(s)	94, 100, 494, 545, 549, 656, 666
DpnII	GATC	7 cut(s)	92, 98, 492, 543, 547, 654, 664
DraIII	CACNNNGTG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	536
EcoO109I	RGGNCCY	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	536
EcoRII	CCWGG	3 cut(s)	157, 223, 744
EcoT38I	GRGCYC	1 cut(s)	741
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	9 cut(s)	34, 258, 320, 403, 536, 706, 770, 775, 795
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	9 cut(s)	30, 254, 316, 399, 532, 702, 766, 771, 791
FauI	CCCGC	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	782
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	1 cut(s)	480
FspBI	CTAG	2 cut(s)	90, 803
GlaI	GCGC	2 cut(s)	81, 529
GluI	GCNGC	1 cut(s)	480
HaeII	RGCGCY	1 cut(s)	83
HapII	CCGG	1 cut(s)	215
HhaI	GCGC	2 cut(s)	82, 530
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	9 cut(s)	34, 258, 320, 403, 536, 706, 770, 775, 795
Hin6I	GCGC	2 cut(s)	80, 528
HinP1I	GCGC	2 cut(s)	80, 528
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	8 cut(s)	179, 474, 675, 681, 707, 716, 721, 776
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	4 cut(s)	463, 523, 649, 783
Hpy188I	TCNGA	5 cut(s)	147, 178, 196, 664, 680
Hpy188III	TCNNGA	7 cut(s)	96, 215, 338, 556, 626, 711, 725
Hpy8I	GTNNAC	4 cut(s)	463, 523, 649, 783
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	787
HpyCH4V	TGCA	4 cut(s)	393, 482, 695, 751
HpyF10VI	GCNNNNNNNGC	3 cut(s)	427, 488, 497
HpyF3I	CTNAG	2 cut(s)	117, 144
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	9 cut(s)	34, 258, 320, 403, 536, 706, 770, 775, 795
HspAI	GCGC	2 cut(s)	80, 528
KasI	GGCGCC	1 cut(s)	79
KflI	GGGWCCC	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	214
Kzo9I	GATC	7 cut(s)	92, 98, 492, 543, 547, 654, 664
LmnI	GCTCC	1 cut(s)	438
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	1 cut(s)	262
MabI	ACCWGGT	2 cut(s)	157, 744
MaeI	CTAG	2 cut(s)	90, 803
MaeIII	GTNAC	4 cut(s)	107, 536, 581, 787
MalI	GATC	7 cut(s)	94, 100, 494, 545, 549, 656, 666
MboI	GATC	7 cut(s)	92, 98, 492, 543, 547, 654, 664
MboII	GAAGA	3 cut(s)	158, 289, 292
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	1 cut(s)	131
Mly113I	GGCGCC	1 cut(s)	80
MlyI	GAGTC	4 cut(s)	675, 710, 716, 785
MmeI	TCCRAC	1 cut(s)	652
MnlI	CCTC	8 cut(s)	33, 38, 126, 244, 379, 401, 432, 511
MroI	TCCGGA	1 cut(s)	214
MseI	TTAA	2 cut(s)	417, 434
MslI	CAYNNNNRTG	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	612
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	3 cut(s)	159, 225, 746
MvaI	CCWGG	3 cut(s)	159, 225, 746
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	3 cut(s)	427, 488, 497
NarI	GGCGCC	1 cut(s)	80
NdeII	GATC	7 cut(s)	92, 98, 492, 543, 547, 654, 664
NlaIII	CATG	9 cut(s)	34, 258, 320, 403, 536, 706, 770, 775, 795
NlaIV	GGNNCC	3 cut(s)	48, 49, 81
NmuCI	GTSAC	2 cut(s)	581, 787
NspI	RCATGY	1 cut(s)	403
NspV	TTCGAA	1 cut(s)	284
PciI	ACATGT	1 cut(s)	399
PfeI	GAWTC	4 cut(s)	179, 474, 675, 721
PkrI	GCNGC	1 cut(s)	481
Ple19I	CGATCG	1 cut(s)	495
PleI	GAGTC	4 cut(s)	675, 710, 715, 784
PluTI	GGCGCC	1 cut(s)	83
PpsI	GAGTC	4 cut(s)	675, 710, 715, 784
PpuMI	RGGWCCY	1 cut(s)	47
PscI	ACATGT	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	3 cut(s)	157, 223, 744
PspEI	GGTNACC	1 cut(s)	536
PspGI	CCWGG	3 cut(s)	157, 223, 744
PspN4I	GGNNCC	3 cut(s)	48, 49, 81
PspPI	GGNCC	1 cut(s)	47
PspPPI	RGGWCCY	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	556
PvuI	CGATCG	1 cut(s)	495
RseI	CAYNNNNRTG	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	417, 434
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	7 cut(s)	92, 98, 492, 543, 547, 654, 664
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	4 cut(s)	675, 710, 716, 785
ScrFI	CCNGG	3 cut(s)	159, 225, 746
SduI	GDGCHC	1 cut(s)	741
SexAI	ACCWGGT	2 cut(s)	157, 744
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	2 cut(s)	372, 613
SfoI	GGCGCC	1 cut(s)	81
SfuI	TTCGAA	1 cut(s)	284
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	388
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	5 cut(s)	275, 291, 430, 453, 610
SspDI	GGCGCC	1 cut(s)	79
SspMI	CTAG	2 cut(s)	90, 803
StyD4I	CCNGG	3 cut(s)	157, 223, 744
TaaI	ACNGT	1 cut(s)	787
TaqI	TCGA	7 cut(s)	95, 284, 495, 507, 546, 636, 719
TasI	AATT	1 cut(s)	131
TfiI	GAWTC	4 cut(s)	179, 474, 675, 721
Tru1I	TTAA	2 cut(s)	417, 434
Tru9I	TTAA	2 cut(s)	417, 434
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	2 cut(s)	581, 787
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	2 cut(s)	581, 787
TspDTI	ATGAA	3 cut(s)	269, 323, 773
TspRI	CASTG	1 cut(s)	648
VpaK11BI	GGWCC	1 cut(s)	47
XceI	RCATGY	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	782
XspI	CTAG	2 cut(s)	90, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.