RLG00000009949

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001555
Physical Location & Seq
Reverse (-)
60871625 .. 60873001
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009949

Sequence Viewer

Length: 498 bp
ATGAGAACAAAACTGAGAATAAATCTTAGAGATTCAGATCTAAGATCTAAAAGCAGATTTGAAATAGTGAGAACAAAATCAGATGCAAAAGAAGAGGAAAACAAGGAAATCAAAACACCACTTGGGCGAGGAATCACCACAGAGGATGAGGAATCACCACAAAGGGTGAGGAATCACCACATGGGTGAGGAAAATTTGGGGAAGAAAGGGTTGCTGCAGAGAAGGGAGAGCCTGGATTTATCCACCGCATTTGCAAATCCGTTTCCTCACGCGCGAGGTCGCTTCAGAGAAGGAGACCTTTCGGGAGAAGGAAAAACACTAGAGATCTGTGTCACCGGCGTTAGGTTGAGATTCTTGGTCGTCAGGGTCAAGAAACGCGCTGGTTCTAGAATTCCGGTGTCTAAGTTCGGGCTGGAGGGTCCGACGGTGATTGTGATGGTAATGACTTCAATTATCTTGCATTTTACCTCTAGGGTTAGTAGCTTGGACGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.73

Weight (kDa)

10.12

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 272, 274, 378
AciI CCGC 1 cut(s) 246
AcsI RAATTY 2 cut(s) 193, 390
AcuI CTGAAG 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 2 cut(s) 62, 450
AjnI CCWGG 1 cut(s) 231
AleI CACNNNNGTG 1 cut(s) 183
AluBI AGCT 2 cut(s) 483, 493
AluI AGCT 2 cut(s) 483, 493
Alw26I GTCTC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 2 cut(s) 193, 390
AspLEI GCGC 2 cut(s) 274, 380
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 7 cut(s) 127, 147, 167, 178, 197, 325, 439
AvaII GGWCC 1 cut(s) 419
BbvI GCAGC 1 cut(s) 201
BccI CCATC 1 cut(s) 430
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 3 cut(s) 320, 387, 471
BfmI CTRYAG 1 cut(s) 215
BglII AGATCT 3 cut(s) 37, 44, 324
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse118I RCCGGY 1 cut(s) 335
Bse8I GATNNNNATC 1 cut(s) 36
BseBI CCWGG 1 cut(s) 233
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 5
BseXI GCAGC 1 cut(s) 201
Bsh1236I CGCG 3 cut(s) 272, 274, 378
BsiSI CCGG 2 cut(s) 336, 395
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 288
Bso31I GGTCTC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 37, 44, 324
BspACI CCGC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 6
BspFNI CGCG 3 cut(s) 272, 274, 378
BspLI GGNNCC 1 cut(s) 420
BspMAI CTGCAG 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 335
BssMI GATC 3 cut(s) 37, 44, 324
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 1 cut(s) 87
BstDEI CTNAG 4 cut(s) 14, 26, 41, 402
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 3 cut(s) 272, 274, 378
BstHHI GCGC 2 cut(s) 274, 380
BstKTI GATC 3 cut(s) 40, 47, 327
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 3 cut(s) 37, 44, 324
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 1 cut(s) 215
BstUI CGCG 3 cut(s) 272, 274, 378
BstV1I GCAGC 1 cut(s) 201
BstX2I RGATCY 3 cut(s) 37, 44, 324
BstYI RGATCY 3 cut(s) 37, 44, 324
BtsCI GGATG 1 cut(s) 151
CfoI GCGC 2 cut(s) 274, 380
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 419
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 1 cut(s) 181
CviJI RGCY 4 cut(s) 231, 412, 483, 493
CviKI_1 RGCY 4 cut(s) 231, 412, 483, 493
DdeI CTNAG 4 cut(s) 14, 26, 41, 402
DpnI GATC 3 cut(s) 39, 46, 326
DpnII GATC 3 cut(s) 37, 44, 324
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 231
FaeI CATG 1 cut(s) 184
FaiI YATR 1 cut(s) 182
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 3 cut(s) 320, 387, 471
GlaI GCGC 2 cut(s) 273, 379
GluI GCNGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 434
HapII CCGG 2 cut(s) 336, 395
HhaI GCGC 2 cut(s) 274, 380
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 2 cut(s) 272, 378
HinP1I GCGC 2 cut(s) 272, 378
HinfI GANTC 5 cut(s) 32, 132, 152, 172, 351
HpaII CCGG 2 cut(s) 336, 395
HphI GGTGA 7 cut(s) 127, 147, 167, 178, 197, 325, 439
Hpy188I TCNGA 4 cut(s) 37, 82, 287, 423
Hpy188III TCNNGA 3 cut(s) 303, 370, 387
Hpy99I CGWCG 1 cut(s) 427
HpyAV CCTTC 3 cut(s) 216, 284, 302
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4V TGCA 4 cut(s) 86, 217, 254, 460
HpyF3I CTNAG 4 cut(s) 14, 26, 41, 402
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 2 cut(s) 272, 378
Kzo9I GATC 3 cut(s) 37, 44, 324
LpnPI CCDG 7 cut(s) 218, 245, 349, 349, 366, 398, 408
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 1 cut(s) 73
MaeI CTAG 3 cut(s) 320, 387, 471
MaeIII GTNAC 1 cut(s) 331
MalI GATC 3 cut(s) 39, 46, 326
MboI GATC 3 cut(s) 37, 44, 324
MboII GAAGA 2 cut(s) 104, 214
MflI RGATCY 3 cut(s) 37, 44, 324
MluCI AATT 3 cut(s) 193, 390, 450
MmeI TCCRAC 1 cut(s) 446
MseI TTAA 1 cut(s) 496
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 2 cut(s) 336, 395
MspR9I CCNGG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 3 cut(s) 272, 274, 378
NdeII GATC 3 cut(s) 37, 44, 324
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 331
OliI CACNNNNGTG 1 cut(s) 183
PfeI GAWTC 5 cut(s) 32, 132, 152, 172, 351
PkrI GCNGC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 1 cut(s) 419
PstI CTGCAG 1 cut(s) 219
PsuI RGATCY 3 cut(s) 37, 44, 324
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 3 cut(s) 37, 44, 324
Sau96I GGNCC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 233
SetI ASST 6 cut(s) 280, 300, 347, 470, 485, 495
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 1 cut(s) 215
SgrAI CRCCGGYG 1 cut(s) 335
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 3 cut(s) 193, 390, 450
SsiI CCGC 1 cut(s) 246
SspMI CTAG 3 cut(s) 320, 387, 471
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 427
TasI AATT 3 cut(s) 193, 390, 450
TfiI GAWTC 5 cut(s) 32, 132, 152, 172, 351
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 331
TspGWI ACGGA 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 2 cut(s) 193, 390
XbaI TCTAGA 1 cut(s) 386
XspI CTAG 3 cut(s) 320, 387, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.