Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

18808534 .. 18808803

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAAGGATCATGTGAATGATCGAACAGACCAATATGGTCGATCTCTAGAAAATTGTTGCCGCTTTCCACTGGAAGTTGTTGAAGCTATTGTTAACGAAATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGAGGACTATATGGACTCAGGGGATTCAAATCCAAAAGAATTAGGCCTCCATATGGCCAATGCCTTGAACAAATATGGAATGGCGTACTGCCACATGGTTGAGCCGAGAATGAAGACGGTTGGAGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

90

Amino Acids

10.08

Weight (kDa)

5.26

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	3 - 86	3.7e-17	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	192
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	83, 165, 205
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
AlwI	GGATC	1 cut(s)	15
AoxI	GGCC	2 cut(s)	181, 192
BalI	TGGCCA	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	165
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	183, 194
BslI	CCNNNNNNNGG	1 cut(s)	190
BsnI	GGCC	2 cut(s)	183, 194
Bsp143I	GATC	3 cut(s)	7, 19, 41
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	183, 194
BspCNI	CTCAG	1 cut(s)	167
BspPI	GGATC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	7, 19, 41
Bst4CI	ACNGT	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	154
BstKTI	GATC	3 cut(s)	10, 22, 44
BstMBI	GATC	3 cut(s)	7, 19, 41
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	183, 194
BtsIMutI	CAGTG	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	11, 232
CviJI	RGCY	4 cut(s)	86, 183, 194, 241
CviKI_1	RGCY	4 cut(s)	86, 183, 194, 241
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	3 cut(s)	9, 21, 43
DpnII	GATC	3 cut(s)	7, 19, 41
EaeI	YGGCCR	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	183
FaeI	CATG	2 cut(s)	14, 235
FaiI	YATR	8 cut(s)	12, 36, 147, 149, 189, 191, 213, 233
FatI	CATG	2 cut(s)	10, 231
FauNDI	CATATG	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	183, 194
Hin1II	CATG	2 cut(s)	14, 235
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	152, 161
HpaI	GTTAAC	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	256
HpyF3I	CTNAG	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	14, 235
KspAI	GTTAAC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	7, 19, 41
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	2 cut(s)	56, 141
MaeI	CTAG	1 cut(s)	47
MalI	GATC	3 cut(s)	9, 21, 43
MboI	GATC	3 cut(s)	7, 19, 41
MboII	GAAGA	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	3 cut(s)	52, 120, 176
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	97, 238
MnlI	CCTC	2 cut(s)	133, 194
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	194
NdeI	CATATG	1 cut(s)	189
NdeII	GATC	3 cut(s)	7, 19, 41
NlaIII	CATG	2 cut(s)	14, 235
NmeAIII	GCCGAG	1 cut(s)	267
PceI	AGGCCT	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	3 cut(s)	7, 19, 41
SchI	GAGTC	1 cut(s)	146
SetI	ASST	1 cut(s)	88
SgeI	CNNG	7 cut(s)	23, 59, 83, 168, 214, 244, 255
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	3 cut(s)	52, 120, 176
SseBI	AGGCCT	1 cut(s)	183
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	47
StuI	AGGCCT	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	22, 40
TasI	AATT	3 cut(s)	52, 120, 176
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	17, 263
TspRI	CASTG	1 cut(s)	75
XbaI	TCTAGA	1 cut(s)	46
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.