Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

44850344 .. 44853011

Gene Structure 2668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G548300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCCTGCTCAACCTCCCACAATTCCTCTCCTTACTCCTTACAAAATGGGAAAGTTCAACCTTTCTCATAGAATTGTTTTCCCACCACTGGCTAGAATGAGATCATACAATAATATTCCACAGCCACATGCCATCTTATACTACTCTCAGAGAACATCTCAAGGGGGTCTTCTCATAGCTGAAGCCACTCTTGTTTCTGACACAGATCAAGGGTGGGTGAATAATCCTGGTTTATGGACAACGGAGCAAGTTGAAGCTTGGAAACCGATTGTTGATGCTGTTCATGCTAAAGGCGGTGTCTTCTTCTGTCAGATTGTGCATCCGGGGAGGGTTTCAAATAGCGGTTTCCAGCCAAGGGGACAAACTCCAATCTCTTCTACTGACAAGCCACTAACCTCACAAATACTAACTAATGGCGTTGCTGTTGCTGAATACACACCTCCAAGACGATTAAGGACAGATGAGATTCCACAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATCGAAGCTGGCTTTGATGGGGTTGAAATTCATGGGGCGCATGGCTACCTGATTGATCAGTTTATGAAAGATCAAGTGAACGATCGAACAGATGAATATGGTGGATCGCTGGAGAATCGTTGCCGGTTCACTCTGGAAATCGTTGAAGCTGTTGCTAATGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCCGACTATATGGAATCAGGGGATTCGAATCCAAAAGCATTAGGCCTTTATATGGCCAAATCCTTGAACAAATACGGGATCCTGTACTGCCATGTGGTTGAGCCAAGAATGAAGACAGTTGGAGACAAAAGTGAAACCCCTTACAGTCTTCTGCCCATGAGAGAAGCTTTCAAAGGCACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCAAAGGGCCGTGCAGATCTTATTGCTTATGGACGTTGGTTCTTGGCTAATCCAGATTTGCCCAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACCGAGAGACATTCTATACATCTGATCCGGTTATTGGTTACACTGATTATCCTTTTCTTGAAACTACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

371

Amino Acids

41.16

Weight (kDa)

6.2

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	887
AciI	CCGC	2 cut(s)	294, 342
AclWI	GGATC	4 cut(s)	622, 784, 797, 1058
AcoI	YGGCCR	1 cut(s)	765
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	797, 1037
AfiI	CCNNNNNNNGG	4 cut(s)	88, 355, 763, 1073
AgsI	TTSAA	8 cut(s)	58, 254, 336, 536, 656, 778, 883, 1100
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	6 cut(s)	179, 257, 518, 659, 878, 1015
AluI	AGCT	6 cut(s)	179, 257, 518, 659, 878, 1015
Alw26I	GTCTC	2 cut(s)	828, 1040
AlwI	GGATC	4 cut(s)	622, 784, 797, 1058
AoxI	GGCC	3 cut(s)	754, 765, 946
ApeKI	GCWGC	2 cut(s)	497, 899
ApoI	RAATTY	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	946
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	229
AsuII	TTCGAA	1 cut(s)	737
BalI	TGGCCA	1 cut(s)	767
BamHI	GGATCC	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	887
BbsI	GAAGAC	4 cut(s)	161, 292, 830, 851
BbvI	GCAGC	2 cut(s)	484, 886
BccI	CCATC	3 cut(s)	140, 521, 917
BceAI	ACGGC	1 cut(s)	933
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	828, 1040
BfaI	CTAG	1 cut(s)	93
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	2 cut(s)	498, 900
BlsI	GCNGC	2 cut(s)	499, 901
Bme1390I	CCNGG	2 cut(s)	228, 324
BmgT120I	GGNCC	1 cut(s)	946
BmiI	GGNNCC	2 cut(s)	791, 889
BmrFI	CCNGG	2 cut(s)	228, 324
BmsI	GCATC	2 cut(s)	265, 328
BpiI	GAAGAC	4 cut(s)	161, 292, 830, 851
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpmI	CTGGAG	1 cut(s)	641
Bpu14I	TTCGAA	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	738
BsaJI	CCNNGG	2 cut(s)	323, 353
BsaWI	WCCGGW	1 cut(s)	1066
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 355, 763, 1073
Bse118I	RCCGGY	1 cut(s)	633
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	894
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	323, 353
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	4 cut(s)	88, 355, 763, 1073
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	1014
BseXI	GCAGC	2 cut(s)	484, 886
BsgI	GTGCAG	1 cut(s)	972
Bsh1285I	CGRYCG	1 cut(s)	595
BshFI	GGCC	3 cut(s)	756, 767, 948
BshNI	GGYRCC	1 cut(s)	887
BsiEI	CGRYCG	1 cut(s)	595
BsiSI	CCGG	3 cut(s)	323, 634, 1067
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	4 cut(s)	88, 355, 763, 1073
BsmAI	GTCTC	2 cut(s)	828, 1040
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	3 cut(s)	756, 767, 948
Bsp119I	TTCGAA	1 cut(s)	737
Bsp143I	GATC	9 cut(s)	101, 205, 565, 580, 592, 614, 789, 955, 1063
BspACI	CCGC	2 cut(s)	294, 342
BspANI	GGCC	3 cut(s)	756, 767, 948
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	791, 889
BspPI	GGATC	4 cut(s)	622, 784, 797, 1058
BspT104I	TTCGAA	1 cut(s)	737
BspT107I	GGYRCC	1 cut(s)	887
BsrDI	GCAATG	1 cut(s)	894
BsrFI	RCCGGY	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	633
BssECI	CCNNGG	2 cut(s)	323, 353
BssMI	GATC	9 cut(s)	101, 205, 565, 580, 592, 614, 789, 955, 1063
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	829, 857
Bst6I	CTCTTC	1 cut(s)	379
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstBI	TTCGAA	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	6, 520
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	9 cut(s)	104, 208, 568, 583, 595, 617, 792, 958, 1066
BstMAI	GTCTC	2 cut(s)	828, 1040
BstMBI	GATC	9 cut(s)	101, 205, 565, 580, 592, 614, 789, 955, 1063
BstMCI	CGRYCG	1 cut(s)	595
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	226, 322
BstV1I	GCAGC	2 cut(s)	484, 886
BstV2I	GAAGAC	4 cut(s)	161, 292, 830, 851
BstX2I	RGATCY	2 cut(s)	789, 955
BstYI	RGATCY	2 cut(s)	789, 955
BsuRI	GGCC	3 cut(s)	756, 767, 948
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	2 cut(s)	86, 1080
Cac8I	GCNNGC	2 cut(s)	6, 520
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	633
Cfr13I	GGNCC	1 cut(s)	946
Csp6I	GTAC	2 cut(s)	796, 1036
CviAII	CATG	6 cut(s)	128, 284, 542, 551, 803, 868
CviQI	GTAC	2 cut(s)	796, 1036
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	9 cut(s)	103, 207, 567, 582, 594, 616, 791, 957, 1065
DpnII	GATC	9 cut(s)	101, 205, 565, 580, 592, 614, 789, 955, 1063
EaeI	YGGCCR	1 cut(s)	765
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	353
Eco147I	AGGCCT	1 cut(s)	756
Eco57I	CTGAAG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	6 cut(s)	131, 287, 545, 554, 806, 871
FalI	AAGNNNNNCTT	4 cut(s)	153, 185, 174, 206
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	6 cut(s)	127, 283, 541, 550, 802, 867
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	498, 900
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	498, 900
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	2 cut(s)	498, 900
GsuI	CTGGAG	1 cut(s)	641
HaeIII	GGCC	3 cut(s)	756, 767, 948
HapII	CCGG	3 cut(s)	323, 634, 1067
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	6 cut(s)	131, 287, 545, 554, 806, 871
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HindIII	AAGCTT	2 cut(s)	255, 876
HinfI	GANTC	5 cut(s)	466, 625, 725, 734, 739
HpaII	CCGG	3 cut(s)	323, 634, 1067
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	589, 639
Hpy188I	TCNGA	4 cut(s)	150, 199, 312, 1063
Hpy188III	TCNNGA	3 cut(s)	644, 992, 1097
Hpy8I	GTNNAC	2 cut(s)	589, 639
HpyAV	CCTTC	1 cut(s)	901
HpyCH4III	ACNGT	2 cut(s)	829, 857
HpyCH4IV	ACGT	1 cut(s)	973
HpyCH4V	TGCA	3 cut(s)	319, 500, 953
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	973
Hsp92II	CATG	6 cut(s)	131, 287, 545, 554, 806, 871
HspAI	GCGC	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	9 cut(s)	101, 205, 565, 580, 592, 614, 789, 955, 1063
LmnI	GCTCC	3 cut(s)	244, 677, 1027
Lsp1109I	GCAGC	2 cut(s)	484, 886
LweI	GCATC	2 cut(s)	265, 328
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	973
MaeIII	GTNAC	1 cut(s)	1076
MalI	GATC	9 cut(s)	103, 207, 567, 582, 594, 616, 791, 957, 1065
MboI	GATC	9 cut(s)	101, 205, 565, 580, 592, 614, 789, 955, 1063
MboII	GAAGA	7 cut(s)	161, 292, 295, 366, 835, 851, 932
MflI	RGATCY	2 cut(s)	789, 955
MlsI	TGGCCA	1 cut(s)	767
MluCI	AATT	5 cut(s)	21, 72, 474, 537, 693
MluNI	TGGCCA	1 cut(s)	767
MmeI	TCCRAC	2 cut(s)	670, 811
MnlI	CCTC	6 cut(s)	24, 36, 321, 406, 450, 1035
Mox20I	TGGCCA	1 cut(s)	767
MscI	TGGCCA	1 cut(s)	767
MseI	TTAA	3 cut(s)	452, 1017, 1111
Msp20I	TGGCCA	1 cut(s)	767
MspI	CCGG	3 cut(s)	323, 634, 1067
MspR9I	CCNGG	2 cut(s)	228, 324
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	9 cut(s)	101, 205, 565, 580, 592, 614, 789, 955, 1063
NlaIII	CATG	6 cut(s)	131, 287, 545, 554, 806, 871
NlaIV	GGNNCC	2 cut(s)	791, 889
NspI	RCATGY	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	737
PceI	AGGCCT	1 cut(s)	756
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	5 cut(s)	466, 625, 725, 734, 739
PkrI	GCNGC	2 cut(s)	499, 901
Ple19I	CGATCG	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	791, 889
PspPI	GGNCC	1 cut(s)	946
PsuI	RGATCY	2 cut(s)	789, 955
PvuI	CGATCG	1 cut(s)	595
RsaI	GTAC	2 cut(s)	797, 1037
RsaNI	GTAC	2 cut(s)	796, 1036
SaqAI	TTAA	3 cut(s)	452, 1017, 1111
SatI	GCNGC	2 cut(s)	498, 900
Sau3AI	GATC	9 cut(s)	101, 205, 565, 580, 592, 614, 789, 955, 1063
Sau96I	GGNCC	1 cut(s)	946
ScrFI	CCNGG	2 cut(s)	228, 324
SfaNI	GCATC	2 cut(s)	265, 328
SfuI	TTCGAA	1 cut(s)	737
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	5 cut(s)	21, 72, 474, 537, 693
SseBI	AGGCCT	1 cut(s)	756
SsiI	CCGC	2 cut(s)	294, 342
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	756
StyD4I	CCNGG	2 cut(s)	226, 322
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	829, 857
TaiI	ACGT	1 cut(s)	976
TaqI	TCGA	3 cut(s)	513, 595, 737
TasI	AATT	5 cut(s)	21, 72, 474, 537, 693
TatI	WGTACW	2 cut(s)	795, 1035
TfiI	GAWTC	5 cut(s)	466, 625, 725, 734, 739
Tru1I	TTAA	3 cut(s)	452, 1017, 1111
Tru9I	TTAA	3 cut(s)	452, 1017, 1111
TscAI	CASTG	2 cut(s)	93, 1087
TseI	GCWGC	2 cut(s)	497, 899
TspDTI	ATGAA	6 cut(s)	272, 530, 590, 618, 836, 883
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	93, 1087
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.