Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001840.1

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

31383 .. 34794

Gene Structure 3412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001840.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgtctgctcaagctcccaccattcctctcctcactccttacaaaatgggaaagttcagtctatctcatcgagttgttttagcacccttgactagacagagatcatacaacaatcttcctcaaccgcatgccatcttatattactctcagcgaacaaccaatgggggtcttttaatagctgaagccagtggagtttctgacacagctcaagggaaaatttatgtttttcatgtgcgaaggtacccggatatgcctggtttatggacaaaggaacaagttgaagcatggaaacccatcgttgatgcagttcatgctaaaggtggtgtattcttctgtcagatctggcatgcaggaagagtttcaaatagtgcttttcaaccaaatggacaagctccgatctcttgtactgacaagccactaacccctcaagtactatctaatggtgttgatgttgctgaattcacacctccaaggcaattaaggacagatgaaatcccacaaattgtcaatgactttagacttgctgcaaggaatgcaatcgaagctggctttgatggggttgaaattcatggagctaatggttaccttattgatcagtttatgaaagaccaagtgaatgatcgaacagaccaatatggtggatctctagagaatcgctgccgatttgctctggaaatcattgaagcagttgttaatgaaataggagcagacaaagttggaattagattatctccatttgccgactatatggaatcaggggattcaaaccctgaagcattaggcctttatatggttcaatccttaaacaaatatgggattctgtactgccatgtgattgagccaagaatgaaggaagctggagtaaagagtgaaagtgccggcagtcttctacccatgagagaagcttttagtggtaccttcatggctaatggtggttttgacagggaagatgggaacaatgccgtggctgagggtcgtgtagatgttattgcttacggccgttggttcttgtctaatccagatttgccaaagagatttgagcttaatgctcctctaaacaagtatgacagaagtactttctatacttctgatccagttgttggttacactgattatccatttcttgaaaccactgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

379

Amino Acids

42.02

Weight (kDa)

5.59

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	240, 914
AccB1I	GGYRCC	2 cut(s)	240, 914
AccB7I	CCANNNNNTGG	1 cut(s)	1100
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	649, 1085
AcoI	YGGCCR	1 cut(s)	997
AcsI	RAATTY	3 cut(s)	216, 458, 564
AcuI	CTGAAG	2 cut(s)	201, 792
AfaI	GTAC	6 cut(s)	242, 406, 432, 824, 916, 1075
AfiI	CCNNNNNNNGG	2 cut(s)	790, 1100
AgsI	TTSAA	8 cut(s)	281, 363, 377, 563, 683, 765, 797, 1127
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	9 cut(s)	14, 179, 206, 392, 545, 575, 857, 905, 1042
AluI	AGCT	9 cut(s)	14, 179, 206, 392, 545, 575, 857, 905, 1042
AlwI	GGATC	2 cut(s)	649, 1085
AoxI	GGCC	2 cut(s)	781, 997
ApeKI	GCWGC	2 cut(s)	524, 657
ApoI	RAATTY	3 cut(s)	216, 458, 564
Asp700I	GAANNNNTTC	1 cut(s)	358
Asp718I	GGTACC	2 cut(s)	240, 914
AsuC2I	CCSGG	1 cut(s)	245
BanI	GGYRCC	2 cut(s)	240, 914
BbsI	GAAGAC	1 cut(s)	878
BbvCI	CCTCAGC	1 cut(s)	969
BbvI	GCAGC	2 cut(s)	511, 644
BccI	CCATC	4 cut(s)	140, 302, 548, 944
BceAI	ACGGC	3 cut(s)	947, 984, 1012
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	245
BfaI	CTAG	2 cut(s)	93, 647
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	2 cut(s)	525, 658
BlsI	GCNGC	2 cut(s)	526, 659
BmcAI	AGTACT	2 cut(s)	432, 1075
Bme1390I	CCNGG	2 cut(s)	245, 255
BmiI	GGNNCC	2 cut(s)	242, 916
BmrFI	CCNGG	2 cut(s)	245, 255
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	878
BpmI	CTGGAG	1 cut(s)	879
Bpu10I	CCTNAGC	1 cut(s)	969
BpuEI	CTTGAG	2 cut(s)	192, 411
BpuMI	CCSGG	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	470, 963
Bsc4I	CCNNNNNNNGG	2 cut(s)	790, 1100
Bse118I	RCCGGY	1 cut(s)	878
Bse1I	ACTGG	2 cut(s)	186, 1094
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	470, 963
BseLI	CCNNNNNNNGG	2 cut(s)	790, 1100
BseMII	CTCAG	2 cut(s)	161, 960
BseNI	ACTGG	2 cut(s)	186, 1094
BseRI	GAGGAG	2 cut(s)	20, 1041
BseX3I	CGGCCG	1 cut(s)	997
BseXI	GCAGC	2 cut(s)	511, 644
Bsh1285I	CGRYCG	1 cut(s)	1000
BshFI	GGCC	2 cut(s)	783, 999
BshNI	GGYRCC	2 cut(s)	240, 914
BsiEI	CGRYCG	1 cut(s)	1000
BsiSI	CCGG	2 cut(s)	245, 879
BslI	CCNNNNNNNGG	2 cut(s)	790, 1100
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	2 cut(s)	783, 999
Bsp143I	GATC	7 cut(s)	101, 339, 396, 592, 619, 641, 1090
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	2 cut(s)	783, 999
BspCNI	CTCAG	2 cut(s)	160, 961
BspLI	GGNNCC	2 cut(s)	242, 916
BspPI	GGATC	2 cut(s)	649, 1085
BspT107I	GGYRCC	2 cut(s)	240, 914
BsrFI	RCCGGY	1 cut(s)	878
BsrI	ACTGG	2 cut(s)	186, 1094
BssAI	RCCGGY	1 cut(s)	878
BssECI	CCNNGG	2 cut(s)	470, 963
BssMI	GATC	7 cut(s)	101, 339, 396, 592, 619, 641, 1090
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	349
BstAPI	GCANNNNNTGC	2 cut(s)	311, 533
BstC8I	GCNNGC	4 cut(s)	129, 348, 547, 880
BstDEI	CTNAG	2 cut(s)	147, 969
BstDSI	CCRYGG	1 cut(s)	963
BstEII	GGTNACC	1 cut(s)	581
BstKTI	GATC	7 cut(s)	104, 342, 399, 595, 622, 644, 1093
BstMBI	GATC	7 cut(s)	101, 339, 396, 592, 619, 641, 1090
BstMCI	CGRYCG	1 cut(s)	1000
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 533, 542
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	2 cut(s)	131, 350
BstPI	GGTNACC	1 cut(s)	581
BstSCI	CCNGG	2 cut(s)	243, 253
BstV1I	GCAGC	2 cut(s)	511, 644
BstV2I	GAAGAC	1 cut(s)	878
BstX2I	RGATCY	2 cut(s)	339, 641
BstXI	CCANNNNNNTGG	1 cut(s)	638
BstYI	RGATCY	2 cut(s)	339, 641
BstZI	CGGCCG	1 cut(s)	997
BsuRI	GGCC	2 cut(s)	783, 999
BtgI	CCRYGG	1 cut(s)	963
BtsI	GCAGTG	1 cut(s)	1131
BtsIMutI	CAGTG	3 cut(s)	193, 1107, 1131
Cac8I	GCNNGC	4 cut(s)	129, 348, 547, 880
Cfr10I	RCCGGY	1 cut(s)	878
Csp6I	GTAC	6 cut(s)	241, 405, 431, 823, 915, 1074
CviAII	CATG	9 cut(s)	128, 230, 285, 311, 347, 569, 830, 895, 922
CviQI	GTAC	6 cut(s)	241, 405, 431, 823, 915, 1074
DdeI	CTNAG	2 cut(s)	147, 969
DpnI	GATC	7 cut(s)	103, 341, 398, 594, 621, 643, 1092
DpnII	GATC	7 cut(s)	101, 339, 396, 592, 619, 641, 1090
EaeI	YGGCCR	1 cut(s)	997
EagI	CGGCCG	1 cut(s)	997
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
EclXI	CGGCCG	1 cut(s)	997
Eco130I	CCWWGG	1 cut(s)	470
Eco147I	AGGCCT	1 cut(s)	783
Eco52I	CGGCCG	1 cut(s)	997
Eco57I	CTGAAG	2 cut(s)	201, 792
Eco91I	GGTNACC	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	9 cut(s)	131, 233, 288, 314, 350, 572, 833, 898, 925
FatI	CATG	9 cut(s)	127, 229, 284, 310, 346, 568, 829, 894, 921
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	525, 658
Fsp4HI	GCNGC	2 cut(s)	525, 658
FspBI	CTAG	2 cut(s)	93, 647
GluI	GCNGC	2 cut(s)	525, 658
GsuI	CTGGAG	1 cut(s)	879
HaeIII	GGCC	2 cut(s)	783, 999
HapII	CCGG	2 cut(s)	245, 879
Hin1II	CATG	9 cut(s)	131, 233, 288, 314, 350, 572, 833, 898, 925
HindIII	AAGCTT	1 cut(s)	903
HinfI	GANTC	4 cut(s)	652, 752, 761, 817
HpaII	CCGG	2 cut(s)	245, 879
Hpy188I	TCNGA	4 cut(s)	199, 339, 396, 1090
Hpy188III	TCNNGA	4 cut(s)	647, 671, 1019, 1124
HpyAV	CCTTC	3 cut(s)	231, 844, 928
HpyCH4V	TGCA	4 cut(s)	305, 350, 527, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 533, 542
HpyF3I	CTNAG	2 cut(s)	147, 969
Hsp92II	CATG	9 cut(s)	131, 233, 288, 314, 350, 572, 833, 898, 925
KpnI	GGTACC	2 cut(s)	244, 918
KroI	GCCGGC	1 cut(s)	878
KroNI	GCCGGC	1 cut(s)	880
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	7 cut(s)	101, 339, 396, 592, 619, 641, 1090
LmnI	GCTCC	5 cut(s)	19, 397, 572, 704, 1054
Lsp1109I	GCAGC	2 cut(s)	511, 644
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	2 cut(s)	93, 647
MaeIII	GTNAC	2 cut(s)	581, 1103
MalI	GATC	7 cut(s)	103, 341, 398, 594, 621, 643, 1092
MboI	GATC	7 cut(s)	101, 339, 396, 592, 619, 641, 1090
MboII	GAAGA	5 cut(s)	107, 322, 366, 878, 959
MflI	RGATCY	2 cut(s)	339, 641
MluCI	AATT	6 cut(s)	216, 458, 476, 501, 564, 720
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	7 cut(s)	36, 41, 129, 435, 477, 964, 1062
MroNI	GCCGGC	1 cut(s)	878
MroXI	GAANNNNTTC	1 cut(s)	358
MseI	TTAA	6 cut(s)	173, 479, 693, 803, 1044, 1138
MspI	CCGG	2 cut(s)	245, 879
MspR9I	CCNGG	2 cut(s)	245, 255
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	311, 533, 542
NaeI	GCCGGC	1 cut(s)	880
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	7 cut(s)	101, 339, 396, 592, 619, 641, 1090
NgoMIV	GCCGGC	1 cut(s)	878
NlaIII	CATG	9 cut(s)	131, 233, 288, 314, 350, 572, 833, 898, 925
NlaIV	GGNNCC	2 cut(s)	242, 916
NspI	RCATGY	2 cut(s)	131, 350
PaeI	GCATGC	2 cut(s)	131, 350
PceI	AGGCCT	1 cut(s)	783
PctI	GAATGC	1 cut(s)	538
PdiI	GCCGGC	1 cut(s)	880
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	4 cut(s)	652, 752, 761, 817
PflMI	CCANNNNNTGG	1 cut(s)	1100
PkrI	GCNGC	2 cut(s)	526, 659
Psp6I	CCWGG	1 cut(s)	253
PspEI	GGTNACC	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	242, 916
PsuI	RGATCY	2 cut(s)	339, 641
RsaI	GTAC	6 cut(s)	242, 406, 432, 824, 916, 1075
RsaNI	GTAC	6 cut(s)	241, 405, 431, 823, 915, 1074
SaqAI	TTAA	6 cut(s)	173, 479, 693, 803, 1044, 1138
SatI	GCNGC	2 cut(s)	525, 658
Sau3AI	GATC	7 cut(s)	101, 339, 396, 592, 619, 641, 1090
ScaI	AGTACT	2 cut(s)	432, 1075
ScrFI	CCNGG	2 cut(s)	245, 255
SfaNI	GCATC	1 cut(s)	292
SmlI	CTYRAG	3 cut(s)	9, 207, 426
SmoI	CTYRAG	3 cut(s)	9, 207, 426
SphI	GCATGC	2 cut(s)	131, 350
Sse9I	AATT	6 cut(s)	216, 458, 476, 501, 564, 720
SseBI	AGGCCT	1 cut(s)	783
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	2 cut(s)	93, 647
StuI	AGGCCT	1 cut(s)	783
StyD4I	CCNGG	2 cut(s)	243, 253
StyI	CCWWGG	1 cut(s)	470
TaqI	TCGA	3 cut(s)	70, 540, 622
TasI	AATT	6 cut(s)	216, 458, 476, 501, 564, 720
TatI	WGTACW	4 cut(s)	404, 430, 822, 1073
TfiI	GAWTC	4 cut(s)	652, 752, 761, 817
Tru1I	TTAA	6 cut(s)	173, 479, 693, 803, 1044, 1138
Tru9I	TTAA	6 cut(s)	173, 479, 693, 803, 1044, 1138
TscAI	CASTG	3 cut(s)	193, 1114, 1138
TseI	GCWGC	2 cut(s)	524, 657
TspDTI	ATGAA	8 cut(s)	218, 299, 504, 557, 617, 711, 863, 910
TspRI	CASTG	3 cut(s)	193, 1114, 1138
Van91I	CCANNNNNTGG	1 cut(s)	1100
XapI	RAATTY	3 cut(s)	216, 458, 564
XbaI	TCTAGA	1 cut(s)	646
XceI	RCATGY	2 cut(s)	131, 350
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	2 cut(s)	93, 647
ZrmI	AGTACT	2 cut(s)	432, 1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.