Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

50646720 .. 50650129

Gene Structure 3410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCTGCTCAAGCTCCCACCATTCCTCTCCTCACTCCTTACAAACTGGGAAAGTTCAATCTCTCTCATCGAGTTGTTTTGGCACCCTTGACTCGACGGAGATCATACAACAATCTTCCTCAACCGCATGCCATCTTATATTACTCTCAGCGAACAACCAATGGGGGTCTTTTAATAGCTGAAGCCAGTGGAGTTTCTGACACAGCTCAAGGGTTTGCGGATATGCCTGGATTATGGTCAAAGGAACAAGTTGAAGCATGGAAACCCATAGTTGATGCAGTTCATGCTAAAGGTGGTGTATTCTTCTGTCAGATCTGGCATGCGGGAAGAGTTTCAAATAGTGTTTTTCAACCAAATGGTCAAGCTCCAATTTCTTGTACTGACAAGCCACTAACCCCTCAAGTACTATCTGACGGTGTTGATGTTGCTGAATTCACTCCTCCAAGGCAATTAAGGACAGATGAAATCCCACAAATTGTCAATGACTTTAGACTTGCTGCACGGAATGCAATTGAAGCTGGCTTTGATGGGGTTGAAATTCATGGAGCTAATGGTTACCTTATTGATCAGTTTATGAAAGACCAAGTGAATGATCGAACAGACCAATATGGTGGATCTCTAGAGAATCGCTGCCGATTTGCTCTGGAAATCATTGAAGCAATTGTTACTGAAATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCTGACTATATGGAATCAGGGGATTCAAACCCTGAAGCATTGGGGCTTTATATGGTTCAATCCTTGAACAAATATGGGATTCTGTACTGCCATATGATTGAGCCAAGAATGAAGGAAGCTGCAGTGAAAAGTGAAACTGCTGACAGTCTTCTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTTCTGGTGGTTTTGACAGGGAAGATGGGAAAAATGCAGTGGCTGAGAGTTGTGCAGATCTTATTGCTTACGGCCGTTGGTTCTTGTCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCCCTAAACAAGTATGACAGAAGTACTTTCTACACTTCTGATCCAGTTGTTGGTTACACTGATTATCCATTTCTTGAGATCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

370

Amino Acids

40.92

Weight (kDa)

5.27

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 343	9.7e-85	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	887
AccB1I	GGYRCC	2 cut(s)	82, 887
AccB7I	CCANNNNNTGG	1 cut(s)	1073
AciI	CCGC	3 cut(s)	125, 218, 323
AclWI	GGATC	2 cut(s)	622, 1058
AcoI	YGGCCR	1 cut(s)	970
AcsI	RAATTY	2 cut(s)	431, 537
AcuI	CTGAAG	2 cut(s)	201, 765
AfaI	GTAC	5 cut(s)	379, 405, 797, 889, 1048
AfiI	CCNNNNNNNGG	1 cut(s)	1073
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	8 cut(s)	14, 179, 206, 365, 518, 548, 830, 1015
AluI	AGCT	8 cut(s)	14, 179, 206, 365, 518, 548, 830, 1015
AlwI	GGATC	2 cut(s)	622, 1058
AlwNI	CAGNNNCTG	1 cut(s)	941
AoxI	GGCC	1 cut(s)	970
ApeKI	GCWGC	3 cut(s)	497, 630, 830
ApoI	RAATTY	2 cut(s)	431, 537
Asp700I	GAANNNNTTC	1 cut(s)	331
Asp718I	GGTACC	1 cut(s)	887
BanI	GGYRCC	2 cut(s)	82, 887
BbsI	GAAGAC	1 cut(s)	851
BbvI	GCAGC	3 cut(s)	484, 617, 817
BccI	CCATC	3 cut(s)	140, 521, 917
BceAI	ACGGC	2 cut(s)	957, 985
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	565
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	1 cut(s)	831
BglII	AGATCT	2 cut(s)	312, 955
BisI	GCNGC	3 cut(s)	498, 631, 831
BlsI	GCNGC	3 cut(s)	499, 632, 832
BmcAI	AGTACT	2 cut(s)	405, 1048
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	84, 889
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	851
BpuEI	CTTGAG	2 cut(s)	192, 384
BsaJI	CCNNGG	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	1 cut(s)	1073
Bse1I	ACTGG	3 cut(s)	51, 186, 1067
Bse3DI	GCAATG	1 cut(s)	894
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	443
BseLI	CCNNNNNNNGG	1 cut(s)	1073
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	2 cut(s)	161, 933
BseNI	ACTGG	3 cut(s)	51, 186, 1067
BseRI	GAGGAG	2 cut(s)	20, 429
BseX3I	CGGCCG	1 cut(s)	970
BseXI	GCAGC	3 cut(s)	484, 617, 817
BsgI	GTGCAG	2 cut(s)	483, 972
Bsh1285I	CGRYCG	1 cut(s)	973
BshFI	GGCC	1 cut(s)	972
BshNI	GGYRCC	2 cut(s)	82, 887
BsiEI	CGRYCG	1 cut(s)	973
BslI	CCNNNNNNNGG	1 cut(s)	1073
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	972
Bsp143I	GATC	8 cut(s)	101, 312, 565, 592, 614, 955, 1063, 1101
BspACI	CCGC	3 cut(s)	125, 218, 323
BspANI	GGCC	1 cut(s)	972
BspCNI	CTCAG	2 cut(s)	160, 934
BspLI	GGNNCC	2 cut(s)	84, 889
BspMAI	CTGCAG	1 cut(s)	835
BspPI	GGATC	2 cut(s)	622, 1058
BspT107I	GGYRCC	2 cut(s)	82, 887
BsrDI	GCAATG	1 cut(s)	894
BsrI	ACTGG	3 cut(s)	51, 186, 1067
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	8 cut(s)	101, 312, 565, 592, 614, 955, 1063, 1101
BssT1I	CCWWGG	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	416, 857
Bst6I	CTCTTC	1 cut(s)	322
BstAPI	GCANNNNNTGC	2 cut(s)	284, 506
BstC8I	GCNNGC	3 cut(s)	129, 321, 520
BstDEI	CTNAG	2 cut(s)	147, 942
BstEII	GGTNACC	1 cut(s)	554
BstKTI	GATC	8 cut(s)	104, 315, 568, 595, 617, 958, 1066, 1104
BstMBI	GATC	8 cut(s)	101, 312, 565, 592, 614, 955, 1063, 1101
BstMCI	CGRYCG	1 cut(s)	973
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	2 cut(s)	131, 323
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	831
BstV1I	GCAGC	3 cut(s)	484, 617, 817
BstV2I	GAAGAC	1 cut(s)	851
BstX2I	RGATCY	3 cut(s)	312, 614, 955
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	3 cut(s)	312, 614, 955
BstZI	CGGCCG	1 cut(s)	970
BsuRI	GGCC	1 cut(s)	972
BtsI	GCAGTG	3 cut(s)	840, 942, 1104
BtsIMutI	CAGTG	5 cut(s)	193, 840, 942, 1080, 1104
Cac8I	GCNNGC	3 cut(s)	129, 321, 520
CaiI	CAGNNNCTG	1 cut(s)	941
Csp6I	GTAC	5 cut(s)	378, 404, 796, 888, 1047
CviAII	CATG	6 cut(s)	128, 258, 284, 320, 542, 868
CviQI	GTAC	5 cut(s)	378, 404, 796, 888, 1047
DdeI	CTNAG	2 cut(s)	147, 942
DpnI	GATC	8 cut(s)	103, 314, 567, 594, 616, 957, 1065, 1103
DpnII	GATC	8 cut(s)	101, 312, 565, 592, 614, 955, 1063, 1101
EaeI	YGGCCR	1 cut(s)	970
EagI	CGGCCG	1 cut(s)	970
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
EclXI	CGGCCG	1 cut(s)	970
Eco130I	CCWWGG	1 cut(s)	443
Eco52I	CGGCCG	1 cut(s)	970
Eco57I	CTGAAG	2 cut(s)	201, 765
Eco91I	GGTNACC	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	6 cut(s)	131, 261, 287, 323, 545, 871
FatI	CATG	6 cut(s)	127, 257, 283, 319, 541, 867
FauI	CCCGC	1 cut(s)	316
FauNDI	CATATG	1 cut(s)	804
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	3 cut(s)	498, 631, 831
Fsp4HI	GCNGC	3 cut(s)	498, 631, 831
FspBI	CTAG	1 cut(s)	620
GluI	GCNGC	3 cut(s)	498, 631, 831
HaeIII	GGCC	1 cut(s)	972
Hin1II	CATG	6 cut(s)	131, 261, 287, 323, 545, 871
HinfI	GANTC	5 cut(s)	91, 625, 725, 734, 790
Hpy188I	TCNGA	4 cut(s)	199, 312, 412, 1063
Hpy188III	TCNNGA	4 cut(s)	620, 644, 992, 1097
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	817, 901
HpyCH4III	ACNGT	2 cut(s)	416, 857
HpyCH4V	TGCA	6 cut(s)	278, 500, 509, 833, 935, 953
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
HpyF3I	CTNAG	2 cut(s)	147, 942
Hsp92II	CATG	6 cut(s)	131, 261, 287, 323, 545, 871
KpnI	GGTACC	1 cut(s)	891
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	8 cut(s)	101, 312, 565, 592, 614, 955, 1063, 1101
LmnI	GCTCC	5 cut(s)	19, 370, 545, 677, 1027
Lsp1109I	GCAGC	3 cut(s)	484, 617, 817
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	620
MaeIII	GTNAC	3 cut(s)	554, 664, 1076
MalI	GATC	8 cut(s)	103, 314, 567, 594, 616, 957, 1065, 1103
MboI	GATC	8 cut(s)	101, 312, 565, 592, 614, 955, 1063, 1101
MboII	GAAGA	5 cut(s)	107, 295, 339, 851, 932
MfeI	CAATTG	2 cut(s)	510, 660
MflI	RGATCY	3 cut(s)	312, 614, 955
MluCI	AATT	8 cut(s)	369, 431, 449, 474, 510, 537, 660, 693
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	5 cut(s)	36, 41, 129, 408, 450
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	5 cut(s)	173, 452, 882, 1017, 1111
MspR9I	CCNGG	1 cut(s)	228
MunI	CAATTG	2 cut(s)	510, 660
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	8 cut(s)	101, 312, 565, 592, 614, 955, 1063, 1101
NlaIII	CATG	6 cut(s)	131, 261, 287, 323, 545, 871
NlaIV	GGNNCC	2 cut(s)	84, 889
NspI	RCATGY	2 cut(s)	131, 323
PaeI	GCATGC	2 cut(s)	131, 323
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	4 cut(s)	625, 725, 734, 790
PflMI	CCANNNNNTGG	1 cut(s)	1073
PkrI	GCNGC	3 cut(s)	499, 632, 832
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	84, 889
PstI	CTGCAG	1 cut(s)	835
PstNI	CAGNNNCTG	1 cut(s)	941
PsuI	RGATCY	3 cut(s)	312, 614, 955
RsaI	GTAC	5 cut(s)	379, 405, 797, 889, 1048
RsaNI	GTAC	5 cut(s)	378, 404, 796, 888, 1047
SaqAI	TTAA	5 cut(s)	173, 452, 882, 1017, 1111
SatI	GCNGC	3 cut(s)	498, 631, 831
Sau3AI	GATC	8 cut(s)	101, 312, 565, 592, 614, 955, 1063, 1101
ScaI	AGTACT	2 cut(s)	405, 1048
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	831
SmlI	CTYRAG	4 cut(s)	9, 207, 399, 1097
SmoI	CTYRAG	4 cut(s)	9, 207, 399, 1097
SphI	GCATGC	2 cut(s)	131, 323
Sse9I	AATT	8 cut(s)	369, 431, 449, 474, 510, 537, 660, 693
SsiI	CCGC	3 cut(s)	125, 218, 323
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	2 cut(s)	416, 857
TaqI	TCGA	3 cut(s)	70, 94, 595
TasI	AATT	8 cut(s)	369, 431, 449, 474, 510, 537, 660, 693
TatI	WGTACW	4 cut(s)	377, 403, 795, 1046
TfiI	GAWTC	4 cut(s)	625, 725, 734, 790
Tru1I	TTAA	5 cut(s)	173, 452, 882, 1017, 1111
Tru9I	TTAA	5 cut(s)	173, 452, 882, 1017, 1111
TscAI	CASTG	5 cut(s)	193, 840, 942, 1087, 1111
TseI	GCWGC	3 cut(s)	497, 630, 830
TspDTI	ATGAA	6 cut(s)	272, 477, 530, 590, 836, 883
TspGWI	ACGGA	2 cut(s)	112, 517
TspRI	CASTG	5 cut(s)	193, 840, 942, 1087, 1111
Van91I	CCANNNNNTGG	1 cut(s)	1073
XapI	RAATTY	2 cut(s)	431, 537
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	2 cut(s)	131, 323
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	1 cut(s)	620
ZrmI	AGTACT	2 cut(s)	405, 1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.