Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

50324315 .. 50326337

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1402400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGTTTATTGTATAATTATTTTAGCACCATTGACCAGACAGAGATCATACAACAATGTTCCTCAACCACATGCTATCTTATATTACTCTCAGAGAACGTCGAACGGGGGTCTTCTCATAGCCGAAGCCACCGGAGTTTCCGACACAGCTCAAGGGTACCCGAACACACCTGGTATATGGACAAAGGAGCAAGTTGAAGCCTGGAAACCCATTGTTGATGCTGTTCATGCTGAAGGTGGCGTCTTCTTCTGTCAGATTTGGCATGTTGGAAGGGTTTCTAATAGCGGTTATCAACCAAATGGGCAAGCTCCAATATCTTCTACTGACAAGCCGATACGATTAAATGGCATCGATGCTTCTGAATTCACGCCTCCAAGACGATTAAGGACAGATGAAATTCCACAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATTCTATTGAAGCTGGCTTCGATGGAGTTGAAATTCATGGGGCGCATGGCTACCTTCTTGATCAATTTCTGAAAGATCATGTGAATGATCGAACAGACCAATATGGTGGATCTCTAGAGAATCGTTGCCGCCTTCCTCTGGAAGTTGTTGAAGCTGTCGTTAACGAAATAGGAGCAGATAAAGTTGGAATTAGATTAGGTCCATTTGCTGACTTTATGGACGCAGGGGATTCAAATCCAAAAGAATTAGGACTCTATATGGCCAATGCCTTGAACAAATATGGAATCGTGTACTGCCACATGATGGTTGAGCCGAGGATGAAGGCAGTTGGAGAAATAGCTGAAACCCACCAGAGTCTTCTTCCCATGAGAAAGGCTTTCCATGGTACCTTCATTGCTGCTGGTGGTTATGACAGGGAAGATGGAAACAGAGCTGTGGCCGAGGGCCGTGCAGATCTTATTGCTTATGGCCGTATTTTCTTGGCGAATCCGGATTTGCCAAAGAGATTTGAACTTAATGCTCCTCTAAACAAATACAACAGAGAGACATTCTACACACCTGATCCCGTCATTGGTTACACTGATTATCCATTTCTTGAAGCCACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

349

Amino Acids

38.62

Weight (kDa)

5.52

Isoelectric Point (pI)

27.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	6 - 321	1.6e-81	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	156, 821
AccB1I	GGYRCC	2 cut(s)	156, 821
AccB7I	CCANNNNNTGG	1 cut(s)	739
AccIII	TCCGGA	1 cut(s)	925
AciI	CCGC	2 cut(s)	285, 565
AclWI	GGATC	2 cut(s)	553, 992
AcoI	YGGCCR	3 cut(s)	696, 873, 904
AcsI	RAATTY	4 cut(s)	362, 396, 436, 468
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	3 cut(s)	158, 728, 823
AfiI	CCNNNNNNNGG	3 cut(s)	574, 739, 1007
AgsI	TTSAA	8 cut(s)	197, 446, 467, 587, 669, 709, 947, 1034
AjnI	CCWGG	2 cut(s)	169, 200
AluBI	AGCT	6 cut(s)	149, 308, 449, 590, 776, 869
AluI	AGCT	6 cut(s)	149, 308, 449, 590, 776, 869
Alw26I	GTCTC	1 cut(s)	974
AlwI	GGATC	2 cut(s)	553, 992
Aor13HI	TCCGGA	1 cut(s)	925
AoxI	GGCC	4 cut(s)	696, 873, 880, 904
ApeKI	GCWGC	2 cut(s)	428, 833
ApoI	RAATTY	4 cut(s)	362, 396, 436, 468
Asp700I	GAANNNNTTC	1 cut(s)	274
Asp718I	GGTACC	2 cut(s)	156, 821
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	635, 880
AvaII	GGWCC	1 cut(s)	635
BalI	TGGCCA	1 cut(s)	698
BanI	GGYRCC	2 cut(s)	156, 821
BbsI	GAAGAC	3 cut(s)	104, 235, 785
BbvI	GCAGC	2 cut(s)	415, 820
BccI	CCATC	3 cut(s)	452, 733, 851
BceAI	ACGGC	2 cut(s)	867, 891
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BciT130I	CCWGG	2 cut(s)	171, 202
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	974
BfaI	CTAG	1 cut(s)	551
BglII	AGATCT	1 cut(s)	889
BisI	GCNGC	3 cut(s)	429, 565, 834
BlsI	GCNGC	3 cut(s)	430, 566, 835
Bme1390I	CCNGG	2 cut(s)	171, 202
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	2 cut(s)	635, 880
BmiI	GGNNCC	2 cut(s)	158, 823
BmrFI	CCNGG	2 cut(s)	171, 202
BmsI	GCATC	3 cut(s)	208, 343, 357
BpiI	GAAGAC	3 cut(s)	104, 235, 785
BpuEI	CTTGAG	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	749, 817, 876
BsaWI	WCCGGW	2 cut(s)	131, 925
Bsc4I	CCNNNNNNNGG	3 cut(s)	574, 739, 1007
Bse3DI	GCAATG	1 cut(s)	828
Bse8I	GATNNNNATC	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	925
BseBI	CCWGG	2 cut(s)	171, 202
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	3 cut(s)	749, 817, 876
BseGI	GGATG	1 cut(s)	759
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	3 cut(s)	574, 739, 1007
BseMI	GCAATG	1 cut(s)	828
BseMII	CTCAG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	948
BseXI	GCAGC	2 cut(s)	415, 820
BsgI	GTGCAG	1 cut(s)	906
BshFI	GGCC	4 cut(s)	698, 875, 882, 906
BshNI	GGYRCC	2 cut(s)	156, 821
BshVI	ATCGAT	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	132, 926
BslI	CCNNNNNNNGG	3 cut(s)	574, 739, 1007
BsmAI	GTCTC	1 cut(s)	974
BsnI	GGCC	4 cut(s)	698, 875, 882, 906
Bsp13I	TCCGGA	1 cut(s)	925
Bsp143I	GATC	7 cut(s)	44, 496, 511, 523, 545, 889, 997
Bsp19I	CCATGG	1 cut(s)	817
BspACI	CCGC	2 cut(s)	285, 565
BspANI	GGCC	4 cut(s)	698, 875, 882, 906
BspCNI	CTCAG	1 cut(s)	103
BspDI	ATCGAT	1 cut(s)	351
BspEI	TCCGGA	1 cut(s)	925
BspLI	GGNNCC	2 cut(s)	158, 823
BspPI	GGATC	2 cut(s)	553, 992
BspT107I	GGYRCC	2 cut(s)	156, 821
BsrDI	GCAATG	1 cut(s)	828
BssECI	CCNNGG	3 cut(s)	749, 817, 876
BssMI	GATC	7 cut(s)	44, 496, 511, 523, 545, 889, 997
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	817
Bst2UI	CCWGG	2 cut(s)	171, 202
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	306, 451
BstDEI	CTNAG	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	817
BstF5I	GGATG	1 cut(s)	759
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	7 cut(s)	47, 499, 514, 526, 548, 892, 1000
BstMAI	GTCTC	1 cut(s)	974
BstMBI	GATC	7 cut(s)	44, 496, 511, 523, 545, 889, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	2 cut(s)	171, 202
BstNSI	RCATGY	2 cut(s)	74, 266
BstSCI	CCNGG	2 cut(s)	169, 200
BstV1I	GCAGC	2 cut(s)	415, 820
BstV2I	GAAGAC	3 cut(s)	104, 235, 785
BstX2I	RGATCY	2 cut(s)	545, 889
BstXI	CCANNNNNNTGG	1 cut(s)	542
BstYI	RGATCY	2 cut(s)	545, 889
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	698, 875, 882, 906
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	817
BtsCI	GGATG	1 cut(s)	759
BtsIMutI	CAGTG	1 cut(s)	1014
Cac8I	GCNNGC	2 cut(s)	306, 451
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	635, 880
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	2 cut(s)	229, 665
CsiI	ACCWGGT	1 cut(s)	169
Csp6I	GTAC	3 cut(s)	157, 727, 822
CviAII	CATG	9 cut(s)	71, 227, 263, 473, 482, 515, 736, 802, 818
CviQI	GTAC	3 cut(s)	157, 727, 822
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	7 cut(s)	46, 498, 513, 525, 547, 891, 999
DpnII	GATC	7 cut(s)	44, 496, 511, 523, 545, 889, 997
EaeI	YGGCCR	3 cut(s)	696, 873, 904
Eco130I	CCWWGG	1 cut(s)	817
Eco47I	GGWCC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	252
EcoRI	GAATTC	2 cut(s)	362, 436
EcoRII	CCWGG	2 cut(s)	169, 200
EcoT14I	CCWWGG	1 cut(s)	817
ErhI	CCWWGG	1 cut(s)	817
FaeI	CATG	9 cut(s)	74, 230, 266, 476, 485, 518, 739, 805, 821
FatI	CATG	9 cut(s)	70, 226, 262, 472, 481, 514, 735, 801, 817
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	429, 565, 834
FokI	GGATG	1 cut(s)	766
Fsp4HI	GCNGC	3 cut(s)	429, 565, 834
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	3 cut(s)	429, 565, 834
HaeIII	GGCC	4 cut(s)	698, 875, 882, 906
HapII	CCGG	2 cut(s)	132, 926
HgaI	GACGC	2 cut(s)	229, 665
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	9 cut(s)	74, 230, 266, 476, 485, 518, 739, 805, 821
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	6 cut(s)	556, 665, 687, 720, 790, 922
HpaI	GTTAAC	1 cut(s)	598
HpaII	CCGG	2 cut(s)	132, 926
Hpy166II	GTNNAC	2 cut(s)	598, 727
Hpy188I	TCNGA	5 cut(s)	93, 142, 255, 361, 507
Hpy188III	TCNNGA	5 cut(s)	494, 551, 575, 926, 1031
Hpy8I	GTNNAC	2 cut(s)	598, 727
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	6 cut(s)	227, 264, 500, 578, 751, 835
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	431, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	9 cut(s)	74, 230, 266, 476, 485, 518, 739, 805, 821
HspAI	GCGC	1 cut(s)	479
Kpn2I	TCCGGA	1 cut(s)	925
KpnI	GGTACC	2 cut(s)	160, 825
Ksp22I	TGATCA	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	598
Kzo9I	GATC	7 cut(s)	44, 496, 511, 523, 545, 889, 997
LmnI	GCTCC	4 cut(s)	187, 313, 608, 961
Lsp1109I	GCAGC	2 cut(s)	415, 820
LweI	GCATC	3 cut(s)	208, 343, 357
MabI	ACCWGGT	1 cut(s)	169
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	1010
MalI	GATC	7 cut(s)	46, 498, 513, 525, 547, 891, 999
MboI	GATC	7 cut(s)	44, 496, 511, 523, 545, 889, 997
MboII	GAAGA	7 cut(s)	104, 235, 238, 309, 785, 788, 866
MflI	RGATCY	2 cut(s)	545, 889
MlsI	TGGCCA	1 cut(s)	698
MluCI	AATT	9 cut(s)	15, 362, 396, 405, 436, 468, 500, 624, 680
MluNI	TGGCCA	1 cut(s)	698
MlyI	GAGTC	2 cut(s)	681, 799
MmeI	TCCRAC	4 cut(s)	165, 247, 601, 745
MnlI	CCTC	6 cut(s)	72, 381, 582, 744, 871, 969
Mox20I	TGGCCA	1 cut(s)	698
MroI	TCCGGA	1 cut(s)	925
MroXI	GAANNNNTTC	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	698
MseI	TTAA	5 cut(s)	341, 383, 597, 951, 1045
MslI	CAYNNNNRTG	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	698
MspI	CCGG	2 cut(s)	132, 926
MspR9I	CCNGG	2 cut(s)	171, 202
MvaI	CCWGG	2 cut(s)	171, 202
MwoI	GCNNNNNNNGC	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	817
NdeII	GATC	7 cut(s)	44, 496, 511, 523, 545, 889, 997
NlaIII	CATG	9 cut(s)	74, 230, 266, 476, 485, 518, 739, 805, 821
NlaIV	GGNNCC	2 cut(s)	158, 823
NmeAIII	GCCGAG	2 cut(s)	774, 901
NspI	RCATGY	2 cut(s)	74, 266
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	556, 665, 720, 922
PflMI	CCANNNNNTGG	1 cut(s)	739
PkrI	GCNGC	3 cut(s)	430, 566, 835
PleI	GAGTC	2 cut(s)	681, 798
PpsI	GAGTC	2 cut(s)	681, 798
Psp6I	CCWGG	2 cut(s)	169, 200
PspGI	CCWGG	2 cut(s)	169, 200
PspN4I	GGNNCC	2 cut(s)	158, 823
PspPI	GGNCC	2 cut(s)	635, 880
PsuI	RGATCY	2 cut(s)	545, 889
RsaI	GTAC	3 cut(s)	158, 728, 823
RsaNI	GTAC	3 cut(s)	157, 727, 822
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	5 cut(s)	341, 383, 597, 951, 1045
SatI	GCNGC	3 cut(s)	429, 565, 834
Sau3AI	GATC	7 cut(s)	44, 496, 511, 523, 545, 889, 997
Sau96I	GGNCC	2 cut(s)	635, 880
SchI	GAGTC	2 cut(s)	681, 799
ScrFI	CCNGG	2 cut(s)	171, 202
SexAI	ACCWGGT	1 cut(s)	169
SfaNI	GCATC	3 cut(s)	208, 343, 357
SinI	GGWCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	9 cut(s)	15, 362, 396, 405, 436, 468, 500, 624, 680
SsiI	CCGC	2 cut(s)	285, 565
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	2 cut(s)	169, 200
StyI	CCWWGG	1 cut(s)	817
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	4 cut(s)	101, 351, 456, 526
TasI	AATT	9 cut(s)	15, 362, 396, 405, 436, 468, 500, 624, 680
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	1 cut(s)	567
TfiI	GAWTC	4 cut(s)	556, 665, 720, 922
Tru1I	TTAA	5 cut(s)	341, 383, 597, 951, 1045
Tru9I	TTAA	5 cut(s)	341, 383, 597, 951, 1045
TscAI	CASTG	1 cut(s)	1021
TseI	GCWGC	2 cut(s)	428, 833
TspDTI	ATGAA	5 cut(s)	215, 408, 461, 770, 817
TspRI	CASTG	1 cut(s)	1021
Van91I	CCANNNNNTGG	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	4 cut(s)	362, 396, 436, 468
XbaI	TCTAGA	1 cut(s)	550
XceI	RCATGY	2 cut(s)	74, 266
XmnI	GAANNNNTTC	1 cut(s)	274
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.