Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Forward (+)

23631954 .. 23635888

Gene Structure 3935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCTGCTCAAGTTCCCACCATTTCTCTCCTCACTCCTTACAAACTCGGAAACTTGAATCTTTCTCATCGAGTTGTTTTAGCACCGTTGACTAGACAGAGATCATACAACAATCTTCCTCAACCACATGCCATCTTACATTACGCTCAGCGAACAAGCAATGGGGGCCTTTTAATAGCTGAAGCCACTGGAGTTTCTGACACAGCTCAAGGGTACCCGGATATGCCTGGCATATGGACAAAGGAACAAGTGGAAGCATGGAAACCCATTGTCAATGCAGTTCATGCTAAAGGTGGTGTATTCTTCTGTCAGATATGGCATGCAGGAAGAGTTTCAAATAGTGTTTTGCAACCAAATGGACAAGCTCCAGTCTCTTGCACTGACAAGCCACTAACCCCTCAAGTACTATCTAATGGTGTTGATGTTGCTGAATACACACCTCCAAGGCGATTAAGGACGGATGAAATCCCACATATTGTCAATGACTTTAGACTTGCTGCAAGGAATGCAATTGAAGCTGGCTTTGATGGGGTTGAAATTCATGGAGCTAATGGGTACCTTATTGATCAGTTTCTGAAAGACCAAGTGAATGATCGAACAGACCAATATGGTGGATCTCTAGAGAATCGCTGCCGATTTGCTTTGGAAATCATTGAAGCTGTTGTTAATGAAATAGGAGCAGATAAAGTTGGAATAAGATTATCTCCATTTGCTGACTATATGGAATCAGGGGATTCAAACCCTGAAGCATTAGGCCTTTACATGGTTCAATCCTTAAACAGATATGGTATTCTGTACTGCCATGTGATTGAACCAAGAATGAAGGAACCTGGAGAAAAAAGTGAAACTGCTTGTAGTCTTCTTCCAATGAGAGAAGCTTTTAGTGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCAGTGGCTGAGGGTCGTGCAGATCTTATTGCTTACGGCCGTTGGTTCTTGTCAAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAACAAGTATGACAGAAGTACGTTCTATACATCTGATCCAGTTGTTGGTTACACGGATTATCCATTTCTTGAGAACACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

371

Amino Acids

40.85

Weight (kDa)

5.34

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 343	1e-87	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	213, 555, 887
AccB1I	GGYRCC	3 cut(s)	213, 555, 887
AccB7I	CCANNNNNTGG	1 cut(s)	1073
AclWI	GGATC	2 cut(s)	622, 1058
AcoI	YGGCCR	1 cut(s)	970
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	2 cut(s)	201, 765
AfaI	GTAC	6 cut(s)	215, 405, 557, 797, 889, 1048
AfiI	CCNNNNNNNGG	2 cut(s)	763, 1073
AgsI	TTSAA	8 cut(s)	58, 336, 515, 536, 656, 738, 770, 812
AjnI	CCWGG	2 cut(s)	226, 829
AluBI	AGCT	8 cut(s)	179, 206, 365, 518, 548, 659, 878, 1015
AluI	AGCT	8 cut(s)	179, 206, 365, 518, 548, 659, 878, 1015
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	2 cut(s)	622, 1058
AlwNI	CAGNNNCTG	2 cut(s)	574, 941
AoxI	GGCC	3 cut(s)	166, 754, 970
ApeKI	GCWGC	3 cut(s)	497, 630, 899
ApoI	RAATTY	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	331
Asp718I	GGTACC	3 cut(s)	213, 555, 887
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	218
BanI	GGYRCC	3 cut(s)	213, 555, 887
BbsI	GAAGAC	1 cut(s)	851
BbvCI	CCTCAGC	1 cut(s)	942
BbvI	GCAGC	3 cut(s)	484, 617, 886
BccI	CCATC	3 cut(s)	140, 521, 917
BceAI	ACGGC	2 cut(s)	957, 985
BciT130I	CCWGG	2 cut(s)	228, 831
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	2 cut(s)	93, 620
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	3 cut(s)	498, 631, 900
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	3 cut(s)	499, 632, 901
BmcAI	AGTACT	1 cut(s)	405
Bme1390I	CCNGG	3 cut(s)	218, 228, 831
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	5 cut(s)	167, 215, 557, 828, 889
BmrFI	CCNGG	3 cut(s)	218, 228, 831
BpiI	GAAGAC	1 cut(s)	851
BpmI	CTGGAG	3 cut(s)	210, 351, 852
Bpu10I	CCTNAGC	1 cut(s)	942
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	192, 384
BpuMI	CCSGG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	2 cut(s)	763, 1073
Bse1I	ACTGG	3 cut(s)	193, 368, 1067
Bse3DI	GCAATG	2 cut(s)	166, 894
BseBI	CCWGG	2 cut(s)	228, 831
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	2 cut(s)	763, 1073
BseMI	GCAATG	2 cut(s)	166, 894
BseMII	CTCAG	2 cut(s)	161, 933
BseNI	ACTGG	3 cut(s)	193, 368, 1067
BseRI	GAGGAG	2 cut(s)	20, 1014
BseX3I	CGGCCG	1 cut(s)	970
BseXI	GCAGC	3 cut(s)	484, 617, 886
BsgI	GTGCAG	1 cut(s)	972
Bsh1285I	CGRYCG	1 cut(s)	973
BshFI	GGCC	3 cut(s)	168, 756, 972
BshNI	GGYRCC	3 cut(s)	213, 555, 887
BsiEI	CGRYCG	1 cut(s)	973
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	763, 1073
BsmAI	GTCTC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	3 cut(s)	168, 756, 972
Bsp143I	GATC	6 cut(s)	101, 565, 592, 614, 955, 1063
Bsp1720I	GCTNAGC	1 cut(s)	147
BspANI	GGCC	3 cut(s)	168, 756, 972
BspCNI	CTCAG	2 cut(s)	160, 934
BspLI	GGNNCC	5 cut(s)	167, 215, 557, 828, 889
BspPI	GGATC	2 cut(s)	622, 1058
BspT107I	GGYRCC	3 cut(s)	213, 555, 887
BsrDI	GCAATG	2 cut(s)	166, 894
BsrI	ACTGG	3 cut(s)	193, 368, 1067
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	6 cut(s)	101, 565, 592, 614, 955, 1063
BssT1I	CCWWGG	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	228, 831
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	322
BstAPI	GCANNNNNTGC	2 cut(s)	284, 506
BstC8I	GCNNGC	2 cut(s)	321, 520
BstDEI	CTNAG	2 cut(s)	147, 942
BstF5I	GGATG	1 cut(s)	466
BstKTI	GATC	6 cut(s)	104, 568, 595, 617, 958, 1066
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	6 cut(s)	101, 565, 592, 614, 955, 1063
BstMCI	CGRYCG	1 cut(s)	973
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 284, 506, 515
BstNI	CCWGG	2 cut(s)	228, 831
BstNSI	RCATGY	2 cut(s)	131, 323
BstSCI	CCNGG	3 cut(s)	216, 226, 829
BstV1I	GCAGC	3 cut(s)	484, 617, 886
BstV2I	GAAGAC	1 cut(s)	851
BstX2I	RGATCY	2 cut(s)	614, 955
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	2 cut(s)	614, 955
BstZI	CGGCCG	1 cut(s)	970
BsuRI	GGCC	3 cut(s)	168, 756, 972
BtsCI	GGATG	1 cut(s)	466
BtsI	GCAGTG	2 cut(s)	942, 1104
BtsIMutI	CAGTG	4 cut(s)	186, 378, 942, 1104
Cac8I	GCNNGC	2 cut(s)	321, 520
CaiI	CAGNNNCTG	2 cut(s)	574, 941
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	6 cut(s)	214, 404, 556, 796, 888, 1047
CviAII	CATG	7 cut(s)	128, 258, 284, 320, 542, 763, 803
CviQI	GTAC	6 cut(s)	214, 404, 556, 796, 888, 1047
DdeI	CTNAG	2 cut(s)	147, 942
DpnI	GATC	6 cut(s)	103, 567, 594, 616, 957, 1065
DpnII	GATC	6 cut(s)	101, 565, 592, 614, 955, 1063
EaeI	YGGCCR	1 cut(s)	970
EagI	CGGCCG	1 cut(s)	970
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
EclXI	CGGCCG	1 cut(s)	970
Eco130I	CCWWGG	1 cut(s)	443
Eco147I	AGGCCT	1 cut(s)	756
Eco52I	CGGCCG	1 cut(s)	970
Eco57I	CTGAAG	2 cut(s)	201, 765
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	226, 829
EcoT14I	CCWWGG	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	7 cut(s)	131, 261, 287, 323, 545, 766, 806
FatI	CATG	7 cut(s)	127, 257, 283, 319, 541, 762, 802
FauNDI	CATATG	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	3 cut(s)	498, 631, 900
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	3 cut(s)	498, 631, 900
FspBI	CTAG	2 cut(s)	93, 620
GluI	GCNGC	3 cut(s)	498, 631, 900
GsuI	CTGGAG	3 cut(s)	210, 351, 852
HaeIII	GGCC	3 cut(s)	168, 756, 972
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	7 cut(s)	131, 261, 287, 323, 545, 766, 806
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	4 cut(s)	58, 625, 725, 734
HpaII	CCGG	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	5 cut(s)	50, 199, 312, 576, 1063
Hpy188III	TCNNGA	3 cut(s)	620, 992, 1097
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	2 cut(s)	817, 901
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	1049
HpyCH4V	TGCA	8 cut(s)	278, 323, 349, 378, 500, 509, 935, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 284, 506, 515
HpyF3I	CTNAG	2 cut(s)	147, 942
HpySE526I	ACGT	1 cut(s)	1049
Hsp92II	CATG	7 cut(s)	131, 261, 287, 323, 545, 766, 806
KpnI	GGTACC	3 cut(s)	217, 559, 891
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	6 cut(s)	101, 565, 592, 614, 955, 1063
LmnI	GCTCC	4 cut(s)	370, 545, 677, 1027
Lsp1109I	GCAGC	3 cut(s)	484, 617, 886
MaeI	CTAG	2 cut(s)	93, 620
MaeII	ACGT	1 cut(s)	1049
MaeIII	GTNAC	1 cut(s)	1076
MalI	GATC	6 cut(s)	103, 567, 594, 616, 957, 1065
MboI	GATC	6 cut(s)	101, 565, 592, 614, 955, 1063
MboII	GAAGA	6 cut(s)	107, 295, 339, 851, 854, 932
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	2 cut(s)	614, 955
MluCI	AATT	2 cut(s)	510, 537
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	6 cut(s)	41, 129, 408, 450, 937, 1035
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	6 cut(s)	173, 452, 666, 776, 1017, 1111
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	3 cut(s)	218, 228, 831
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	2 cut(s)	228, 831
MwoI	GCNNNNNNNGC	4 cut(s)	165, 284, 506, 515
NciI	CCSGG	1 cut(s)	218
NdeI	CATATG	1 cut(s)	233
NdeII	GATC	6 cut(s)	101, 565, 592, 614, 955, 1063
NlaIII	CATG	7 cut(s)	131, 261, 287, 323, 545, 766, 806
NlaIV	GGNNCC	5 cut(s)	167, 215, 557, 828, 889
NspI	RCATGY	2 cut(s)	131, 323
PaeI	GCATGC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	756
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	4 cut(s)	58, 625, 725, 734
PflMI	CCANNNNNTGG	1 cut(s)	1073
PkrI	GCNGC	3 cut(s)	499, 632, 901
Psp6I	CCWGG	2 cut(s)	226, 829
PspGI	CCWGG	2 cut(s)	226, 829
PspN4I	GGNNCC	5 cut(s)	167, 215, 557, 828, 889
PspPI	GGNCC	1 cut(s)	166
PstNI	CAGNNNCTG	2 cut(s)	574, 941
PsuI	RGATCY	2 cut(s)	614, 955
RsaI	GTAC	6 cut(s)	215, 405, 557, 797, 889, 1048
RsaNI	GTAC	6 cut(s)	214, 404, 556, 796, 888, 1047
SaqAI	TTAA	6 cut(s)	173, 452, 666, 776, 1017, 1111
SatI	GCNGC	3 cut(s)	498, 631, 900
Sau3AI	GATC	6 cut(s)	101, 565, 592, 614, 955, 1063
Sau96I	GGNCC	1 cut(s)	166
ScaI	AGTACT	1 cut(s)	405
ScrFI	CCNGG	3 cut(s)	218, 228, 831
SmlI	CTYRAG	4 cut(s)	9, 207, 399, 1097
SmoI	CTYRAG	4 cut(s)	9, 207, 399, 1097
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	2 cut(s)	510, 537
SseBI	AGGCCT	1 cut(s)	756
SspMI	CTAG	2 cut(s)	93, 620
StuI	AGGCCT	1 cut(s)	756
StyD4I	CCNGG	3 cut(s)	216, 226, 829
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	1 cut(s)	1052
TaqI	TCGA	2 cut(s)	70, 595
TasI	AATT	2 cut(s)	510, 537
TatI	WGTACW	2 cut(s)	403, 795
TfiI	GAWTC	4 cut(s)	58, 625, 725, 734
Tru1I	TTAA	6 cut(s)	173, 452, 666, 776, 1017, 1111
Tru9I	TTAA	6 cut(s)	173, 452, 666, 776, 1017, 1111
TscAI	CASTG	4 cut(s)	193, 385, 942, 1111
TseI	GCWGC	3 cut(s)	497, 630, 899
TspDTI	ATGAA	6 cut(s)	272, 477, 530, 684, 836, 883
TspGWI	ACGGA	2 cut(s)	473, 1097
TspRI	CASTG	4 cut(s)	193, 385, 942, 1111
Van91I	CCANNNNNTGG	1 cut(s)	1073
XapI	RAATTY	1 cut(s)	537
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	2 cut(s)	131, 323
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	2 cut(s)	93, 620
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.