Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Forward (+)

7163109 .. 7164942

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGACGTCGCGTCACCAGGCACCGTTTTGCGGAGAACAACAACGAGACGAACGTGTCGACGTTGTCGTCGTCAGTGGCGGCGAAAATATACTGAAGGTTGATGTGACAAACTACGAAAGGAACTGTTTGAAATGGTCTATGGCTCCGTTTGGGATTGCGTTTTGTTTTGATGGAATTGAGATTCATGCGGCACACGGCTACCTCATTGATCAATTTTTGAAAGATGAAATCAACGATCGAACTGATGAAGTTGCCGTCAGAATCTCACCAGCTATTGATTTTCATGATGCTACAGACTCCGACCCGATTGGCCTAGGCCTTGCAGTGATTGGCAGGCTCAATGAGCTTCAATGCAACGTAGGTTCAAAGCTCGCTTATCTCCATGTGACTCAGCCTCGTTTCGCTACTCAAATAAACGTAGGCCGGGCCGAGTTTGATCAAGACAGAGAAACTCAATTCATGAGGACTTTGCGAGAAGCTTATCAAGGTACATTCATGGCTAGTGGAGGGTTTACTAGAGAGCTAGGAATGGAAACAGTGGCTTCCGGTGATGCAGATTTAGTGTCGTTTGGCCGACATTTTATCTCAAACCCTGACCTGGTGTTGAGGTTTAAGTTGAATGCTCCTTTGACTTTGAACAAGTATATTAGGGAGACTTTCTACACCGATGACCCTGTAGTTGGGTACACAGACTATCCTTTTCTGGTCAGAGAAAGTGTAAAAGAGGATGAGCTCTCCCCAGTTTTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

251

Amino Acids

28.19

Weight (kDa)

4.81

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	56 - 83	2.7e-09	NADH:flavin oxidoreductase / NADH oxidase family
Oxidored_FMN	PF00724	84 - 208	6.6e-11	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	53, 65
AatII	GACGTC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	1 cut(s)	10
AciI	CCGC	3 cut(s)	30, 78, 188
AcoI	YGGCCR	1 cut(s)	571
AcuI	CTGAAG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	490, 686
AfiI	CCNNNNNNNGG	3 cut(s)	29, 598, 680
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	6 cut(s)	130, 220, 350, 366, 619, 637
AhdI	GACNNNNNGTC	1 cut(s)	9
AjnI	CCWGG	2 cut(s)	15, 597
AluBI	AGCT	6 cut(s)	272, 346, 370, 479, 523, 733
AluI	AGCT	6 cut(s)	272, 346, 370, 479, 523, 733
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	2 cut(s)	39, 647
AoxI	GGCC	5 cut(s)	310, 316, 421, 426, 571
AspA2I	CCTAGG	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	426
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	3 cut(s)	5, 258, 560
AvrII	CCTAGG	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	735
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	2 cut(s)	211, 239
BciT130I	CCWGG	2 cut(s)	17, 599
BclI	TGATCA	2 cut(s)	208, 436
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	2 cut(s)	39, 647
BfaI	CTAG	4 cut(s)	314, 501, 516, 524
BfmI	CTRYAG	2 cut(s)	291, 675
BisI	GCNGC	2 cut(s)	79, 189
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	2 cut(s)	80, 190
Bme1390I	CCNGG	3 cut(s)	17, 425, 599
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	2 cut(s)	21, 144
BmrFI	CCNGG	3 cut(s)	17, 425, 599
BmrI	ACTGGG	1 cut(s)	734
BmsI	GCATC	2 cut(s)	277, 541
BmuI	ACTGGG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	313
BsaWI	WCCGGW	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 598, 680
Bse1I	ACTGG	1 cut(s)	740
BseBI	CCWGG	2 cut(s)	17, 599
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	3 cut(s)	29, 598, 680
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	740
Bsh1236I	CGCG	1 cut(s)	10
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	5 cut(s)	312, 318, 423, 428, 573
BshNI	GGYRCC	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	735
BsiSI	CCGG	2 cut(s)	424, 546
BslI	CCNNNNNNNGG	3 cut(s)	29, 598, 680
BsmAI	GTCTC	2 cut(s)	39, 647
BsmBI	CGTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	5 cut(s)	312, 318, 423, 428, 573
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	3 cut(s)	208, 235, 436
BspACI	CCGC	3 cut(s)	30, 78, 188
BspANI	GGCC	5 cut(s)	312, 318, 423, 428, 573
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	10
BspHI	TCATGA	2 cut(s)	283, 459
BspLI	GGNNCC	2 cut(s)	21, 144
BspT107I	GGYRCC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	740
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	3 cut(s)	208, 235, 436
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	2 cut(s)	17, 599
Bst4CI	ACNGT	3 cut(s)	24, 125, 538
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	335, 372
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	211, 238, 439
BstMAI	GTCTC	2 cut(s)	39, 647
BstMBI	GATC	3 cut(s)	208, 235, 436
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNI	CCWGG	2 cut(s)	17, 599
BstSCI	CCNGG	3 cut(s)	15, 423, 597
BstSFI	CTRYAG	2 cut(s)	291, 675
BstUI	CGCG	1 cut(s)	10
BsuRI	GGCC	5 cut(s)	312, 318, 423, 428, 573
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	79, 330, 543
Cac8I	GCNNGC	2 cut(s)	335, 372
CciI	TCATGA	2 cut(s)	283, 459
Cfr13I	GGNCC	1 cut(s)	426
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	2 cut(s)	489, 685
CviAII	CATG	5 cut(s)	185, 284, 383, 460, 496
CviQI	GTAC	2 cut(s)	489, 685
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	3 cut(s)	210, 237, 438
DpnII	GATC	3 cut(s)	208, 235, 436
DrdI	GACNNNNNNGTC	2 cut(s)	53, 65
DriI	GACNNNNNGTC	1 cut(s)	9
DseDI	GACNNNNNNGTC	2 cut(s)	53, 65
EaeI	YGGCCR	1 cut(s)	571
Eam1105I	GACNNNNNGTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	733
Eco130I	CCWWGG	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	735
Eco53kI	GAGCTC	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	733
EcoRII	CCWGG	2 cut(s)	15, 597
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	313
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	5 cut(s)	188, 287, 386, 463, 499
FaiI	YATR	8 cut(s)	89, 140, 186, 285, 384, 461, 497, 645
FatI	CATG	5 cut(s)	184, 283, 382, 459, 495
FbaI	TGATCA	2 cut(s)	208, 436
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	79, 189
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	2 cut(s)	79, 189
FspBI	CTAG	4 cut(s)	314, 501, 516, 524
GluI	GCNGC	2 cut(s)	79, 189
HaeIII	GGCC	5 cut(s)	312, 318, 423, 428, 573
HapII	CCGG	2 cut(s)	424, 546
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	188, 287, 386, 463, 499
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	4 cut(s)	181, 261, 296, 388
HpaII	CCGG	2 cut(s)	424, 546
HphI	GGTGA	3 cut(s)	5, 258, 560
Hpy166II	GTNNAC	3 cut(s)	58, 513, 687
Hpy188I	TCNGA	3 cut(s)	260, 301, 710
Hpy188III	TCNNGA	3 cut(s)	284, 440, 460
Hpy8I	GTNNAC	3 cut(s)	58, 513, 687
Hpy99I	CGWCG	3 cut(s)	10, 62, 71
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	3 cut(s)	24, 125, 538
HpyCH4IV	ACGT	5 cut(s)	5, 52, 60, 357, 417
HpyCH4V	TGCA	3 cut(s)	323, 354, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	5 cut(s)	5, 52, 60, 357, 417
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	188, 287, 386, 463, 499
Ksp22I	TGATCA	2 cut(s)	208, 436
Kzo9I	GATC	3 cut(s)	208, 235, 436
LmnI	GCTCC	2 cut(s)	148, 628
LweI	GCATC	2 cut(s)	277, 541
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	4 cut(s)	314, 501, 516, 524
MaeII	ACGT	5 cut(s)	5, 52, 60, 357, 417
MaeIII	GTNAC	3 cut(s)	11, 103, 385
MalI	GATC	3 cut(s)	210, 237, 438
MboI	GATC	3 cut(s)	208, 235, 436
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	3 cut(s)	174, 212, 455
MlyI	GAGTC	2 cut(s)	290, 382
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	6 cut(s)	212, 405, 456, 500, 600, 718
MseI	TTAA	1 cut(s)	612
MspI	CCGG	2 cut(s)	424, 546
MspR9I	CCNGG	3 cut(s)	17, 425, 599
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	2 cut(s)	17, 599
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	343
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	3 cut(s)	208, 235, 436
NlaIII	CATG	5 cut(s)	188, 287, 386, 463, 499
NlaIV	GGNNCC	2 cut(s)	21, 144
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	3 cut(s)	11, 103, 385
PagI	TCATGA	2 cut(s)	283, 459
PceI	AGGCCT	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	4 cut(s)	49, 54, 63, 66
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	181, 261
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	80, 190
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	2 cut(s)	290, 382
PpsI	GAGTC	2 cut(s)	290, 382
Psp124BI	GAGCTC	1 cut(s)	735
Psp6I	CCWGG	2 cut(s)	15, 597
PspGI	CCWGG	2 cut(s)	15, 597
PspN4I	GGNNCC	2 cut(s)	21, 144
PspPI	GGNCC	1 cut(s)	426
PsyI	GACNNNGTC	1 cut(s)	62
PvuI	CGATCG	1 cut(s)	238
RsaI	GTAC	2 cut(s)	490, 686
RsaNI	GTAC	2 cut(s)	489, 685
SacI	GAGCTC	1 cut(s)	735
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	2 cut(s)	79, 189
Sau3AI	GATC	3 cut(s)	208, 235, 436
Sau96I	GGNCC	1 cut(s)	426
SchI	GAGTC	2 cut(s)	290, 382
ScrFI	CCNGG	3 cut(s)	17, 425, 599
SduI	GDGCHC	1 cut(s)	735
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	2 cut(s)	277, 541
SfcI	CTRYAG	2 cut(s)	291, 675
Sse9I	AATT	3 cut(s)	174, 212, 455
SseBI	AGGCCT	1 cut(s)	318
SsiI	CCGC	3 cut(s)	30, 78, 188
SspMI	CTAG	4 cut(s)	314, 501, 516, 524
SstI	GAGCTC	1 cut(s)	735
StuI	AGGCCT	1 cut(s)	318
StyD4I	CCNGG	3 cut(s)	15, 423, 597
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	3 cut(s)	24, 125, 538
TaiI	ACGT	5 cut(s)	8, 55, 63, 360, 420
TaqI	TCGA	2 cut(s)	57, 238
TasI	AATT	3 cut(s)	174, 212, 455
TauI	GCSGC	2 cut(s)	81, 191
TfiI	GAWTC	2 cut(s)	181, 261
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	3 cut(s)	79, 330, 543
TseFI	GTSAC	3 cut(s)	11, 103, 385
Tsp45I	GTSAC	3 cut(s)	11, 103, 385
TspDTI	ATGAA	6 cut(s)	173, 240, 261, 272, 448, 484
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	3 cut(s)	79, 330, 543
Tth111I	GACNNNGTC	1 cut(s)	62
XmaJI	CCTAGG	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	4 cut(s)	314, 501, 516, 524
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.