Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

50215029 .. 50217383

Gene Structure 2355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1401200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTACCACTAATCAAGCTCAAGTAGGTGGTCCCACAAGCCCTCTCCTTGCTCCTTACAAACTTGGAAACTTCAATCTTTCTCATAGAATTGTTTTAGCACCATTGACCAGACAGAGATCATACAACAATGTTCCTCAACCACATGCTATCTTATATTACTCTCAGAGAACTTCGAATGGGGGTCTTCTCATAGCTGAAGCCACTGGAGTTTCCGACACAGCTCAAGGGTACCCGAACACACCTGGTATATGGACAATGGAGCAAGTTGAAGCCTGGAAACCCATTGTTGATGCTGTTCATGCTAAAGGTGGCGTCTTCTTCTGTCAGATTTGGCATGTTGGAAGGGTTTCTAATAGCAGTTATCAACCAAATGGGCAAGCTCCAATAACTTCTACTGACAAGCCGATACGATTAAATGGCATCGATGCTTCTGAATTCACGCCTCCAAGACGATTAAGGACAGATGAAATTCCACAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATTCTATTGAAGCTGGCTTCGATGGAGTTGAAATTCATGGGGCGCATGGCTACCTTCTTGATCAGTTTCTGAAAGATCATGTGAATGATCGAACAGACCAATATGGTGGATCTCTAGAGAATCGTTGCCGCCTTCCTCTGGAAGTTGTTGAAGCTGTCGCTAACGAAATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCTGACTATATGGACTCAGGGGATTCAAATCCAAAAGAATTAGGCCTCTATATGGCCAATGCCTTGAACAAATATGGAATTGTGTACTGCCACATGGTTGAGCCGAGGATGAAGACAATGGGAGAAAAAGATGAAACCCACCAGTCTTCTTCCCATGAGAAAGTCTTTCCATGGTACCTTCATTGCTGCTGGTGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

306

Amino Acids

33.97

Weight (kDa)

6.12

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	16 - 289	2.1e-75	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	231, 891
AccB1I	GGYRCC	2 cut(s)	231, 891
AciI	CCGC	1 cut(s)	640
AclWI	GGATC	1 cut(s)	628
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	4 cut(s)	437, 471, 511, 543
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	3 cut(s)	233, 803, 893
AfiI	CCNNNNNNNGG	2 cut(s)	649, 769
AgsI	TTSAA	7 cut(s)	76, 272, 521, 542, 662, 744, 784
AjnI	CCWGG	2 cut(s)	244, 275
AluBI	AGCT	6 cut(s)	20, 197, 224, 383, 524, 665
AluI	AGCT	6 cut(s)	20, 197, 224, 383, 524, 665
AlwI	GGATC	1 cut(s)	628
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	2 cut(s)	760, 771
ApeKI	GCWGC	2 cut(s)	503, 903
ApoI	RAATTY	4 cut(s)	437, 471, 511, 543
Asp700I	GAANNNNTTC	1 cut(s)	349
Asp718I	GGTACC	2 cut(s)	231, 891
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	32
AsuII	TTCGAA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	773
BanI	GGYRCC	2 cut(s)	231, 891
BbsI	GAAGAC	4 cut(s)	179, 310, 836, 855
BbvI	GCAGC	2 cut(s)	490, 890
BccI	CCATC	1 cut(s)	527
BciT130I	CCWGG	2 cut(s)	246, 277
BclI	TGATCA	1 cut(s)	571
BfaI	CTAG	1 cut(s)	626
BisI	GCNGC	3 cut(s)	504, 640, 904
BlsI	GCNGC	3 cut(s)	505, 641, 905
Bme1390I	CCNGG	2 cut(s)	246, 277
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	3 cut(s)	34, 233, 893
BmrFI	CCNGG	2 cut(s)	246, 277
BmsI	GCATC	3 cut(s)	283, 418, 432
BpiI	GAAGAC	4 cut(s)	179, 310, 836, 855
BpmI	CTGGAG	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	176
BpuEI	CTTGAG	2 cut(s)	6, 210
Bsa29I	ATCGAT	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	744
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	821, 887
Bsc4I	CCNNNNNNNGG	2 cut(s)	649, 769
Bse1I	ACTGG	2 cut(s)	211, 859
Bse3DI	GCAATG	1 cut(s)	898
Bse8I	GATNNNNATC	1 cut(s)	744
BseBI	CCWGG	2 cut(s)	246, 277
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	821, 887
BseGI	GGATG	1 cut(s)	831
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	2 cut(s)	649, 769
BseMI	GCAATG	1 cut(s)	898
BseMII	CTCAG	2 cut(s)	179, 747
BseNI	ACTGG	2 cut(s)	211, 859
BseXI	GCAGC	2 cut(s)	490, 890
BshFI	GGCC	2 cut(s)	762, 773
BshNI	GGYRCC	2 cut(s)	231, 891
BshVI	ATCGAT	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	649, 769
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	762, 773
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	5 cut(s)	119, 571, 586, 598, 620
Bsp19I	CCATGG	1 cut(s)	887
BspACI	CCGC	1 cut(s)	640
BspANI	GGCC	2 cut(s)	762, 773
BspCNI	CTCAG	2 cut(s)	178, 746
BspDI	ATCGAT	1 cut(s)	426
BspLI	GGNNCC	3 cut(s)	34, 233, 893
BspPI	GGATC	1 cut(s)	628
BspT104I	TTCGAA	1 cut(s)	176
BspT107I	GGYRCC	2 cut(s)	231, 891
BsrDI	GCAATG	1 cut(s)	898
BsrI	ACTGG	2 cut(s)	211, 859
BssECI	CCNNGG	2 cut(s)	821, 887
BssMI	GATC	5 cut(s)	119, 571, 586, 598, 620
BssNI	GRCGYC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	887
Bst2UI	CCWGG	2 cut(s)	246, 277
BstACI	GRCGYC	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	381, 526
BstDEI	CTNAG	2 cut(s)	165, 733
BstDSI	CCRYGG	1 cut(s)	887
BstF5I	GGATG	1 cut(s)	831
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	5 cut(s)	122, 574, 589, 601, 623
BstMBI	GATC	5 cut(s)	119, 571, 586, 598, 620
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	2 cut(s)	246, 277
BstNSI	RCATGY	2 cut(s)	149, 341
BstSCI	CCNGG	2 cut(s)	244, 275
BstV1I	GCAGC	2 cut(s)	490, 890
BstV2I	GAAGAC	4 cut(s)	179, 310, 836, 855
BstX2I	RGATCY	1 cut(s)	620
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	620
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	2 cut(s)	762, 773
BsuTUI	ATCGAT	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	887
BtsCI	GGATG	1 cut(s)	831
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	381, 526
CaiI	CAGNNNCTG	1 cut(s)	580
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	426
CseI	GACGC	1 cut(s)	304
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	3 cut(s)	232, 802, 892
CviAII	CATG	9 cut(s)	146, 302, 338, 548, 557, 590, 811, 872, 888
CviQI	GTAC	3 cut(s)	232, 802, 892
DdeI	CTNAG	2 cut(s)	165, 733
DpnI	GATC	5 cut(s)	121, 573, 588, 600, 622
DpnII	GATC	5 cut(s)	119, 571, 586, 598, 620
EaeI	YGGCCR	1 cut(s)	771
Eco130I	CCWWGG	1 cut(s)	887
Eco147I	AGGCCT	1 cut(s)	762
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	219
EcoRI	GAATTC	2 cut(s)	437, 511
EcoRII	CCWGG	2 cut(s)	244, 275
EcoT14I	CCWWGG	1 cut(s)	887
ErhI	CCWWGG	1 cut(s)	887
FaeI	CATG	9 cut(s)	149, 305, 341, 551, 560, 593, 814, 875, 891
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	9 cut(s)	145, 301, 337, 547, 556, 589, 810, 871, 887
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	504, 640, 904
FokI	GGATG	1 cut(s)	838
Fsp4HI	GCNGC	3 cut(s)	504, 640, 904
FspBI	CTAG	1 cut(s)	626
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	3 cut(s)	504, 640, 904
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	762, 773
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	556
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	9 cut(s)	149, 305, 341, 551, 560, 593, 814, 875, 891
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HinfI	GANTC	3 cut(s)	631, 731, 740
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	5 cut(s)	168, 217, 330, 436, 582
Hpy188III	TCNNGA	3 cut(s)	569, 626, 650
Hpy8I	GTNNAC	1 cut(s)	802
HpyAV	CCTTC	4 cut(s)	339, 575, 653, 905
HpyCH4V	TGCA	1 cut(s)	506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	165, 733
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	9 cut(s)	149, 305, 341, 551, 560, 593, 814, 875, 891
HspAI	GCGC	1 cut(s)	554
KpnI	GGTACC	2 cut(s)	235, 895
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	5 cut(s)	119, 571, 586, 598, 620
LmnI	GCTCC	4 cut(s)	58, 262, 388, 683
Lsp1109I	GCAGC	2 cut(s)	490, 890
LweI	GCATC	3 cut(s)	283, 418, 432
MabI	ACCWGGT	1 cut(s)	244
MaeI	CTAG	1 cut(s)	626
MalI	GATC	5 cut(s)	121, 573, 588, 600, 622
MboI	GATC	5 cut(s)	119, 571, 586, 598, 620
MboII	GAAGA	6 cut(s)	179, 310, 313, 841, 855, 858
MflI	RGATCY	1 cut(s)	620
MlsI	TGGCCA	1 cut(s)	773
MluCI	AATT	9 cut(s)	90, 437, 471, 480, 511, 543, 699, 755, 795
MluNI	TGGCCA	1 cut(s)	773
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	3 cut(s)	240, 322, 676
MnlI	CCTC	6 cut(s)	54, 147, 456, 657, 773, 816
Mox20I	TGGCCA	1 cut(s)	773
MroXI	GAANNNNTTC	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	773
MseI	TTAA	2 cut(s)	416, 458
MslI	CAYNNNNRTG	1 cut(s)	594
Msp20I	TGGCCA	1 cut(s)	773
MspR9I	CCNGG	2 cut(s)	246, 277
MvaI	CCWGG	2 cut(s)	246, 277
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	887
NdeII	GATC	5 cut(s)	119, 571, 586, 598, 620
NlaIII	CATG	9 cut(s)	149, 305, 341, 551, 560, 593, 814, 875, 891
NlaIV	GGNNCC	3 cut(s)	34, 233, 893
NmeAIII	GCCGAG	1 cut(s)	846
NspI	RCATGY	2 cut(s)	149, 341
NspV	TTCGAA	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	762
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	631, 740
PkrI	GCNGC	3 cut(s)	505, 641, 905
PleI	GAGTC	1 cut(s)	725
PpsI	GAGTC	1 cut(s)	725
Psp6I	CCWGG	2 cut(s)	244, 275
PspGI	CCWGG	2 cut(s)	244, 275
PspN4I	GGNNCC	3 cut(s)	34, 233, 893
PspPI	GGNCC	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	620
RsaI	GTAC	3 cut(s)	233, 803, 893
RsaNI	GTAC	3 cut(s)	232, 802, 892
RseI	CAYNNNNRTG	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	416, 458
SatI	GCNGC	3 cut(s)	504, 640, 904
Sau3AI	GATC	5 cut(s)	119, 571, 586, 598, 620
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	2 cut(s)	246, 277
SexAI	ACCWGGT	1 cut(s)	244
SfaNI	GCATC	3 cut(s)	283, 418, 432
SfuI	TTCGAA	1 cut(s)	176
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	2 cut(s)	21, 225
SmoI	CTYRAG	2 cut(s)	21, 225
Sse9I	AATT	9 cut(s)	90, 437, 471, 480, 511, 543, 699, 755, 795
SseBI	AGGCCT	1 cut(s)	762
SsiI	CCGC	1 cut(s)	640
SspMI	CTAG	1 cut(s)	626
StuI	AGGCCT	1 cut(s)	762
StyD4I	CCNGG	2 cut(s)	244, 275
StyI	CCWWGG	1 cut(s)	887
TaqI	TCGA	4 cut(s)	176, 426, 531, 601
TasI	AATT	9 cut(s)	90, 437, 471, 480, 511, 543, 699, 755, 795
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	1 cut(s)	642
TfiI	GAWTC	2 cut(s)	631, 740
Tru1I	TTAA	2 cut(s)	416, 458
Tru9I	TTAA	2 cut(s)	416, 458
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	503, 903
TspDTI	ATGAA	6 cut(s)	290, 483, 536, 842, 864, 887
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	4 cut(s)	437, 471, 511, 543
XbaI	TCTAGA	1 cut(s)	625
XceI	RCATGY	2 cut(s)	149, 341
XmnI	GAANNNNTTC	1 cut(s)	349
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.